BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314676
Length=2487
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3347 0.0
AT4G18520.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 71.3 4e-11
> AT1G53600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:20001263-20003416 FORWARD LENGTH=2154
Length=2154
Score = 3347 bits (1812), Expect = 0.0
Identities = 2041/2154 (95%), Gaps = 6/2154 (0%)
Strand=Plus/Plus
Query 1 ATGGTGATGAGGCCGATTACGAACAAAGGATTAATTTACAGACACAATCTTTGTCTGAGA 60
||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGTGATGAGACCGATTTCGAACAAAGGATTAATTTACAGACACAATATTTGTCTGAGA 60
Query 61 TGTAATTCTACGCTTGCTGTCTCTAACCACGAGCCCATTACCCAGAAAACACGAAGCTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TGTAATTCTACGCTTGCTGTCTCTAACCACGAGCCCATTACCCAGAAAACACGAAACTTT 120
Query 121 CTGGAGACGACGACGACGAGCACAGCTATCTTTCAATGCAATTCTCAGATTTCGAAGCTC 180
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 121 CTGGAGACGACGACAACGAGCACAGCTATCTTTCAATGTAATTCTCAGATTTCGAAGCAC 180
Query 181 GCGAGAAATGGGAATCTCCAAGAGGCTGAAGCTATATTT-AGACAAATGTCGCATAGAAG 239
||||||||||||||||||||||| ||||||||||| ||| ||||| ||||| |||||||
Sbjct 181 GCGAGAAATGGGAATCTCCAAGAAGCTGAAGCTAT-TTTCAGACAGATGTCAAATAGAAG 239
Query 240 TATTGTCTCTTGGAATGCGATGATTTCTGCTTACGCGGAGAATGGTAAGATGAGTAAAGC 299
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TATTGTCTCTTGGATTGCGATGATTTCTGCTTACGCAGAGAATGGTAAGATGAGTAAAGC 299
Query 300 ATGGCAAGTGTTCGATGAAATGCCTGTGAGAGCTACAACTTCTTATAATGCGATGATTAC 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 ATGGCAAGTGTTCGATGAAATGCCTGTGAGAGTTACAACTTCTTATAATGCGATGATTAC 359
Query 360 TGCTATGATTAAAAACAAGTGTGATTTAGGG-AAAGCTTATGAATTGTTTTGTGATATAC 418
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 360 GGCTATGATTAAAAACAAGTGTGATTT-GGGTAAAGCTTATGAATTGTTTTGTGATATAC 418
Query 419 CGGAGAAGAACGCGGTTTCTTATGCGACGATGATTACTGGTTTCGTTCGGGCAGGGAGGT 478
|||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||| |||
Sbjct 419 CGGAGAAGAATGCGGTTTCTTATGCGACGATGATTACCGGTTTTGTTCGGGCTGGGCGGT 478
Query 479 TTGATGAGGCGGAATGTTTGTATGCTGAGACACCTGTGAAGTTTCGTGATCCTGTTGCTT 538
|||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 TTGATGAGGCCGAATTTTTGTATGCTGAGACACCTGTGAAGTTTCGTGATTCTGTTGCTT 538
Query 539 CGAATGTTTTGTTAAGTGGGTATTTGAGAGCAGGGAAATGGAACGAGGCTGTTCGTGTTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGAATGTTTTGTTAAGTGGGTATTTGAGAGCAGGGAAATGGAACGAGGCTGTTCGTGTTT 598
Query 599 TTGAGGGTATGGCTGTGAAAGAAGTGGTATCGTATAGCTCAATGGTTGATGGGTACTGCA 658
|| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||
Sbjct 599 TTCAGGGTATGGCTGTGAAAGAAGTGGTATCGTGTAGCTCAATGGTTCATGGGTATTGCA 658
Query 659 AAATGGGGAGAATT-TTGGATGCGAGAAGTCTTTTTGATAGAATGCCTGAGAGAAATGTG 717
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 AAATGGGGAGAATTGTT-GATGCGAGAAGTCTTTTTGATAGAATGACTGAGAGAAATGTG 717
Query 718 ATTACTTGGACTGCTATGATTGATGGGTATTTTAAAGCTGGGTTTTTTGAAGATGGGTTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATTACTTGGACTGCTATGATTGATGGGTATTTTAAAGCTGGGTTTTTTGAAGATGGGTTT 777
Query 778 GGTCTGTTTCTGAGAATGAGACAGGAGGGAGATGTCAGGGTAAATTCTAATACTTTGGCT 837
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 778 GGTCTGTTTCTGAGAATGAGACAGGAGGGAGATGTCAAGGTTAATTCTAATACTTTGGCT 837
Query 838 GTAATGTTTAGAGCATGTCGGGATTTTTTCAGATACCGAGAGGGAAGTCAGATTCATGGG 897
|| ||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 838 GTCATGTTTAAAGCTTGTCGAGATTTTGTCAGATACCGAGAGGGAAGTCAGATTCATGGG 897
Query 898 TTAGTTTCACGAATGCCTCTGGAGTTTGATCTGTTTCTAGGGAATTCATTGATTTCGATG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 898 TTAGTTTCACGAATGCCTCTGGAGTTTGATCTGTTTCTAGGGAATTCATTGATGTCAATG 957
Query 958 TACTCTAAGCTTGGTTATATGGGAGAGGCCAAAGCGGTGTTTGGCGTGATGAAATATAAA 1017
||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 958 TACTCTAAGCTTGGTTATATGGGAGAGGCCAAAGCAGTGTTTGGGGTGATGAAAAATAAA 1017
Query 1018 GACAGTGTTTCTTGGAATTCCTTGATCACGGGTCTTGTTCAGCGCGAACAGATTTCTGAA 1077
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1018 GACAGTGTTTCTTGGAATTCCTTGATCACGGGTCTTGTTCAGCGCAAACAGATTTCTGAA 1077
Query 1078 GCTTATGAACTTTTCGAGAAGATGCCGGGTAAAGATATGGTATCCTGGACAGATATGATC 1137
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 GCTTATGAACTTTTCGAGAAGATGCCGGGTAAAGATATGGTGTCCTGGACAGATATGATC 1137
Query 1138 AAGGGGTTTTCTGGAAAAGGAGAAATCTCTAAATGTGTGGAGTTGTTTGGAATGATGCCT 1197
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1138 AAGGGATTTTCTGGAAAAGGAGAAATCTCTAAATGTGTAGAGTTATTTGGAATGATGCCT 1197
Query 1198 GAGAAGGACGACATAACATGGACTGCTATGATATCTGCTTTTGTGAGCAATGGATATTAT 1257
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GAGAAGGACAACATAACATGGACTGCTATGATATCTGCTTTTGTGAGCAATGGATATTAT 1257
Query 1258 GAGGAGGCGCTTTGCTGGTTTCATAAGATGCTTCGGAAACAGGTTTGTCCAAATTCCTAC 1317
|||||||| ||||||||||||||||||||||| | |||| |||||||||| |||||||||
Sbjct 1258 GAGGAGGCACTTTGCTGGTTTCATAAGATGCTCCAGAAAGAGGTTTGTCCTAATTCCTAC 1317
Query 1318 ACTTTCAGTAGTGTCCTCAGCGCAACAGCTAGTTTGGCGGATTTAATTGAAGGACTACAG 1377
|||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||
Sbjct 1318 ACTTTCAGTAGTGTCCTCAGTGCAACAGCTAGTTTAGCGGATTTAATTGAAGGATTACAA 1377
Query 1378 ATCCACGGTAGAGTTGTGAAGATGAACATGGCGAATGACTTGTCAGTTCAGAATTCATTG 1437
||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 1378 ATCCACGGTAGAGTTGTGAAGATGAACATAGTGAATGACTTGTCTGTTCAGAATTCATTG 1437
Query 1438 GTATCTATGTATTGCAAATGCGGGAACACAAATGATGCTTACAAGATCTTCTCATGCATC 1497
||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1438 GTATCGATGTATTGTAAATGCGGGAACACAAATGATGCTTACAAGATATTTTCATGCATC 1497
Query 1498 AGTGAGCCCAATATTGTTTCTTATAACACGATGATCAGCGGGTTTTCCTATAACGGCTTC 1557
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 1498 AGTGAGCCCAATATTGTTTCTTATAACACGATGATCAGCGGGTATTCCTATAATGGTTTT 1557
Query 1558 GGGAAGGAAGCTGTTAAATTGTTCTCCATGTTGGAAAGTACAGGAAAAGAGCCGAATGGT 1617
|| ||| ||||| | |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1558 GGTAAGAAAGCTCTAAAATTGTTCTCCATGTTGGAAAGTTCAGGAAAAGAGCCAAATGGT 1617
Query 1618 GTTACCTTTCTTGCTCTGTTATCAGCCTGTGTTCATGTTGGATACGTGGACTTAGGATGG 1677
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1618 GTTACCTTTCTTGCTCTGTTATCAGCTTGTGTTCATGTTGGATATGTGGACTTAGGATGG 1677
Query 1678 AAATACTTCAAATCTATGAAGTTCTCGTACGGCATTGAACCAGGACCTGATCATTATGCA 1737
|||||||||||||| ||||| | ||| ||| ||||||||||||||||||||||||||||
Sbjct 1678 AAATACTTCAAATCGATGAAATCCTCTTACAACATTGAACCAGGACCTGATCATTATGCA 1737
Query 1738 TGCATTGTTGATCTTTTTGGCAGAAGTGGATTACTTGATGAAGCATATAACTTGATCTCT 1797
||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1738 TGCATGGTTGATCTCCTTGGCAGAAGTGGATTACTTGATGACGCATCTAACTTGATCTCT 1797
Query 1798 ACAATGCCTTGTGAGCCTCATTCTGGAGTTTGGGGCAGCTTGCTTAGTGCAAGCAAAACT 1857
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1798 ACAATGCCTTGTAAGCCTCATTCTGGGGTTTGGGGCAGCTTGCTTAGTGCAAGCAAGACT 1857
Query 1858 CATTTACGTGTCGATCTAGCAGAGCTTGCTGCTAAGAAACTAATCGAACTTGAGCCTGAT 1917
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CATTTACGTGTCGATCTAGCTGAGCTTGCTGCTAAGAAACTAATCGAACTTGAGCCTGAT 1917
Query 1918 AGCGCAACACCTTACGTGGTATTATCCCAGCTATATTCAATGGTTGGGAAAAACAGTGAT 1977
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 1918 AGTGCAACACCTTACGTGGTATTGTCCCAGCTATATTCAATTATTGGGAAAAACAGAGAT 1977
Query 1978 TGTGATCGGATAATGAATATCAAGAAATCGAAAAGAATAAAGAAGGATCCCGGGTCTAGC 2037
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1978 TGTGATCGAATAATGAATATCAAGAAATCGAAAAGAATAAAGAAGGATCCTGGGTCTAGC 2037
Query 2038 TGGATAATCTTAAAGGGTCAAGTGCATAATTTCCTTGCAGGAGATGAATCTCATCTGAAT 2097
||||| |||||||||||| |||| |||||||| |||||||||||||||||||| ||||||
Sbjct 2038 TGGATCATCTTAAAGGGTGAAGTACATAATTTTCTTGCAGGAGATGAATCTCAGCTGAAT 2097
Query 2098 CTTGAAGAGATAGCTTTCACACTGGATATGATTGGAAATGAAATGGAATTGATT 2151
||||||||||||| ||||||| || | |||||| |||| |||||||||||||||
Sbjct 2098 CTTGAAGAGATAGGTTTCACATTGAAGATGATTAGAAAGGAAATGGAATTGATT 2151
> AT4G18520.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:10215120-10217204 REVERSE LENGTH=2085
Length=2085
Score = 71.3 bits (38), Expect = 4e-11
Identities = 47/51 (92%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 700 ATGCCTGAGAGAAAT-GTGATTACTTGGACTGCTATGATTGATGGGTATTT 749
|||||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 528 ATGCCTGAGAAAAATACTG-TTACTTGGACTGCTATGATTGATGGGTATTT 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123410679780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5