BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314680

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   529    2e-149


> AT1G53640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant 
structures; EXPRESSED DURING: 11 growth stages; Has 1186 Blast 
hits to 678 proteins in 89 species: Archae - 0; Bacteria 
- 50; Metazoa - 731; Fungi - 92; Plants - 226; Viruses - 4; 
Other Eukaryotes - 83 (source: NCBI BLink). | chr1:20020885-20025461 
REVERSE LENGTH=873
Length=873

 Score =  529 bits (286),  Expect = 2e-149
 Identities = 469/554 (85%), Gaps = 25/554 (5%)
 Strand=Plus/Plus

Query  1    ATGAAATTCGATGATAACTACAAACTTATTGTTATAGTCATCGGCGGCGTTTTAGCTGGA  60
            ||||||||||||||||| ||||||||||||||| ||| |||| ||||||||||||| |||
Sbjct  1    ATGAAATTCGATGATAAGTACAAACTTATTGTTGTAGGCATCAGCGGCGTTTTAGCGGGA  60

Query  61   GTTGCTGTCGTTATGTTT-TC--CTGTTACAAGAACAAGAGGAAGAACCTTCAGCTACCG  117
            |||| |||| | |||||| ||   |||||||||||||||| ||||||  |||||||||||
Sbjct  61   GTTGTTGTCATAATGTTTATCTGTTGTTACAAGAACAAGAAGAAGAAGTTTCAGCTACCG  120

Query  118  GAGCTGACACAGACACCGGAGTGGCAGCGACAAATTGTTTCTGCTCCTACACTTCAGACA  177
            |||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  GAGCCGCCACAGACACCGGAGTGGCAGCGACAAATTGTTTCTGCTCCGACACTTCAGACA  180

Query  178  AGAAACATTGATGTCGGAAATGATCGCTTGTGGGGTAGAAGCGACACCGTTGTGAATAAA  237
            ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct  181  AGAAACATTGATGTCGGAAATGATCGCTTGTGGGGTAAAAGCGAAACCGTTGTGAAGAAA  240

Query  238  TCTATTATTCCACTTAAGCCAAACGCTTTCA-ACGATAGCTTGCGATACCAGAGGCCTAA  296
            ||| | |||||||| | |||||||||  | | || ||| |||||| || ||| |||||||
Sbjct  241  TCTGTCATTCCACTGAGGCCAAACGCAGT-AGACAATACCTTGCGCTATCAGGGGCCTAA  299

Query  297  AAATTTGGAGAGGCCTCGGGGACAGAGAGATGATGGGAC---TGCGGCTTCTACTTCAGC  353
            ||||||||||||||||||| ||||||||||||||| |||   ||| ||||||||||||||
Sbjct  300  AAATTTGGAGAGGCCTCGGAGACAGAGAGATGATGTGACGCCTGCAGCTTCTACTTCAGC  359

Query  354  ATTTGGTGGTGGTTGTGTTGCCATTAGCggtggtgacaacggttgtggtgctagtcatag  413
            ||||| ||||| ||||| || || ||||||||||||||||||||||| || | |||| ||
Sbjct  360  ATTTGCTGGTGATTGTGGTGGCAGTAGCGGTGGTGACAACGGTTGTGATGGTGGTCACAG  419

Query  414  tggtggtg--gtcac--agtggtggtggtg-gatgtgg-tggtgggggaggtg--gAG-A  464
            ||| ||||  || ||  |||  || |  |  ||| | | ||||  |  | ||   | | |
Sbjct  420  TGGCGGTGCTGTGACTGAGTTTTGCTA-TACGATCTCGATGGTTCGT-ATGTTTTGTGGA  477

Query  465  AT-----GCCGGAAGAAGAAAAAGCCTTCATCGTCTTCGTCTTCACCGTCGCGAGATATC  519
            ||     |||||||||| ||||||||||| |||||| |||||||||||||||||||||| 
Sbjct  478  ATCCTCAGCCGGAAGAATAAAAAGCCTTCGTCGTCTCCGTCTTCACCGTCGCGAGATATT  537

Query  520  AAAAAGGGTAAGAC  533
            ||||||| ||||||
Sbjct  538  AAAAAGG-TAAGAC  550



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32350790668


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5