BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314697
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53840.1 | Symbols: ATPME1, PME1 | pectin methylesterase 1 |... 2651 0.0
> AT1G53840.1 | Symbols: ATPME1, PME1 | pectin methylesterase 1
| chr1:20101445-20103667 FORWARD LENGTH=2058
Length=2058
Score = 2651 bits (1435), Expect = 0.0
Identities = 1657/1765 (94%), Gaps = 11/1765 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTGTGAACTCCTTCAAAGGATATGGAAAAGTTA-ACGAAGCTGAAGATTTAGC 59
|||||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 89 ATGGATTCAGTGAACTCCTTCAAAGGATATGGAAAAG-TAGACGAAGCTCAAGATTTAGC 147
Query 60 ATTGAAGaaaaaaaCAAGAAAACGTCTACTTCTGCTATCCATCTCCGTCGTAGTTCTCAT 119
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 148 ATTGAAGAAAAAGACAAGAAAACGTCTACTTCTACTATCCATCTCCGTCGTAGTTCTCAT 207
Query 120 CGCCGTAATAATCGCCGCCGTAGTCGCCACCGTCGTTCACAAAAAGAATAACGAGTCAAC 179
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 208 CGCCGTAATAATCGCCGCCGTAGTCGCCACCGTCGTTCACAAGAACAAAAACGAGTCAAC 267
Query 180 ACCGAGTTCACCTCCCGAGTTAACACCATCCACTTCACTCAAAGCCATTTGCAGCGTAAC 239
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 268 ACCGAGTCCACCTCCCGAGTTAACACCATCCACTTCACTCAAAGCCATTTGCAGTGTAAC 327
Query 240 TCGTTTCCCTGAATCTTGCATTTCAAGTATCTCAAAGCTTCCATCTTCCAACACATCAGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 328 TCGTTTCCCTGAATCTTGCATTTCAAGTATCTCAAAGCTTCCATCTTCCAACACAACAGA 387
Query 300 TCCAGAGACTCTGTTTAAGCTCTCATTGAAAGTAATCATCGATGAGCTCGATTCGATTTC 359
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 388 TCCAGAGACTCTATTCAAGCTCTCATTGAAAGTAATCATCGATGAGCTTGATTCGATTTC 447
Query 360 CGATTTACCGGAAAAGCTATCGAAAGAGACAGAAGACGAAAGAATCAAATCTGCGTTAAG 419
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 448 CGATTTACCGGAGAAGCTATCGAAAGAGACTGAAGACGAAAGAATCAAATCTGCGTTAAG 507
Query 420 GGTTTGTGGAGATCTAATCGAAGATGCTTTAGATCGGCTCAACGACACTGTTTCCGCCAT 479
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 508 GGTTTGTGGAGATCTGATCGAAGATGCTTTAGATCGACTCAACGACACTGTTTCCGCCAT 567
Query 480 TGATGACGAAGGAAAGAAGAAAACTTTGTCATCTTCCAAAATCGAAGATCTCAAAACTTG 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TGATGACGAAGAAAAGAAGAAAACTTTGTCATCTTCCAAAATCGAAGATCTCAAAACTTG 627
Query 540 GCTAAGCGCAACGGTAACAGATCACGACACGTGTTTCGATACGTTAGACGAGTTAAAACA 599
||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||
Sbjct 628 GCTAAGCGCAACGGTAACAGATCACGAGACGTGTTTCGATTCGTTAGATGAGTTGAAACA 687
Query 600 GAACAAAACAGAGTATGCGAACTCGACGATCACTCAGAATCTGAAATCGGCAATGAGTAG 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 688 GAACAAAACAGAGTATGCGAACTCGACGATTACTCAGAATCTGAAATCGGCAATGAGTAG 747
Query 660 ATCAACAGAGTTCACTAGCAACAGTCTTGCAATTGTATCGAAGATTCTTGCTGCGTTAAG 719
|||||| |||||||| || |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 748 ATCAACGGAGTTCACAAGTAACAGTCTTGCAATAGTATCGAAGATTCTTTCTGCGTTAAG 807
Query 720 CGATTTGGGGATTCCGATTCACAGGAGAAGAAGACTGATGAG---TCATCATCAGCAAAG 776
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 808 CGATTTGGGGATTCCGATACACAGGAGAAGAAGACTGATGAGTCATCATCATCAGCAAAG 867
Query 777 TGTGGATTTTGAGGATTGGGCACGGCGGAGGTTGTTGCAGACGG-AGAGTTTGAAGCCTA 835
||||||||||||| | |||||||| |||||||||||||| |||| || |||| ||||||
Sbjct 868 TGTGGATTTTGAGAAATGGGCACGACGGAGGTTGTTGCAAACGGCAG-GTTTAAAGCCTG 926
Query 836 ATGTGACGGTGGCGAGTGATGGAACCGGTGATGTGTTGACGGTGAATGAAGCGGTGGCGA 895
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 927 ATGTGACGGTGGCGGGTGATGGAACCGGTGATGTGTTGACTGTGAATGAAGCGGTGGCTA 986
Query 896 TGGTGCCGAAGAAGAGTTTGAAGATGTTTGTGATATATGTGAAGAGTGGAACTTATAAAG 955
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 987 AGGTGCCGAAGAAGAGTTTGAAGATGTTTGTGATTTATGTGAAGAGTGGAACTTATGTTG 1046
Query 956 AGAATGTTGTGATGGATAAGAGTAAATGGAATGTTATGATTTACGGTGACGGCAAAGGAA 1015
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1047 AGAATGTTGTGATGGATAAGAGTAAATGGAACGTTATGATTTACGGTGACGGCAAAGGGA 1106
Query 1016 AGACCATTATTTCCGGCGGTAAGAACTTCGTCGACGGGACTCCTACTTACGAAACGGCGA 1075
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 AGACCATTATTTCCGGCAGCAAGAACTTCGTCGACGGGACTCCTACTTACGAAACGGCGA 1166
Query 1076 CGTTTGCTATACAAGGCAAAGGATTTATAATGAAGGATATTGGAATCATAAACACCGCCG 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1167 CGTTTGCTATACAAGGCAAAGGATTTATAATGAAGGATATTGGAATCATAAACACCGCGG 1226
Query 1136 GAGCAACGAAACATCAGGCGGTAGCATTCCGATCAGGGTCCGATTTCTCAGTCTATTACC 1195
||||| | ||||| || || || |||||||||||||| || |||||||||||||||||||
Sbjct 1227 GAGCAGCAAAACACCAAGCTGTGGCATTCCGATCAGGCTCTGATTTCTCAGTCTATTACC 1286
Query 1196 AATGCTCCTTCGACGGTTTTCAAGACACTCTTTACCCTCACTCCAACCGGCAATTCTACC 1255
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1287 AATGCTCATTCGATGGTTTTCAAGACACTCTTTACCCTCACTCCAACCGCCAATTCTACC 1346
Query 1256 GTGACTGCGACGTTACCGGAACAATCGACTTCATTTTTGGAAGTGCCGCCGTCGTTTTCC 1315
|||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||
Sbjct 1347 GTGACTGCGACGTTACTGGGACAATCGACTTCATTTTCGGAAGTGCTGCGGTCGTTTTCC 1406
Query 1316 AAGGCTGCAAAATCATGCCACGGCAGCCTCTTCCTAACCAATTCAACACCATAACCGCTC 1375
||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 1407 AAGGCTGCAAAATCATGCCTCGCCAGCCTCTTTCTAACCAATTCAACACCATAACCGCTC 1466
Query 1376 AGGGCAAAAAAGATCCGAATCAAAACTCCGGGATGTCGATCCAGCGATGCACTATCTCCG 1435
||||||||||||||||||| |||| ||| ||||||||||| || ||||||||||||||||
Sbjct 1467 AGGGCAAAAAAGATCCGAACCAAAGCTCGGGGATGTCGATTCAACGATGCACTATCTCCG 1526
Query 1436 CAAATGGCAATGTGATTGCTCCCACGTATCTTGGCCGGCCGTGGAAGGATTTTTCCACGA 1495
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1527 CAAACGGCAATGTGATTGCTCCCACGTATCTTGGCCGGCCGTGGAAGGAGTTTTCCACGA 1586
Query 1496 CTGTAATTATGGAAACTGAGATTGGACCGGTGGTTAGACCGTCCGGGTGGATGTCATGGG 1555
| || |||||||| || | ||||||| | |||||| ||||||||||||||||||||||||
Sbjct 1587 CGGTTATTATGGAGACGGTGATTGGAGCAGTGGTTCGACCGTCCGGGTGGATGTCATGGG 1646
Query 1556 TTTCCGGAGTTGATCCACCAGCAAGTATTGTGTACGGAGAGTATAAGAATACGGGTCCGG 1615
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1647 TTTCTGGAGTTGATCCACCAGCAAGTATTGTCTACGGAGAGTATAAGAATACGGGCCCGG 1706
Query 1616 GGTCGGATGTAAC-CAAGAGAGTTAAATGGGCCGGATATAAATCGGTTATGTCGGACGCT 1674
| || |||||||| || ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1707 GTTCAGATGTAACGCA-GAGAGTTAAATGGGCTGGATATAAACCGGTTATGTCGGACGCC 1765
Query 1675 GAGGCTGCGAAGTTTACGGTGGCCACGCTTTTACATGGAGGTGATTGGATACCGGCGACA 1734
||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| |||
Sbjct 1766 GAGGCTGCGAAGTTTACAGTGGCTACGCTTTTACACGGAGCTGATTGGATACCGGCAACA 1825
Query 1735 GGAGTGACGCA-TCAACTATCTTAA 1758
||||||| || ||| |||||||||
Sbjct 1826 GGAGTGAT-CAATCAGCTATCTTAA 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5