BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314703
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53920.1 | Symbols: GLIP5 | GDSL-motif lipase 5 | chr1:20137... 1760 0.0
> AT1G53920.1 | Symbols: GLIP5 | GDSL-motif lipase 5 | chr1:20137712-20139637
FORWARD LENGTH=1171
Length=1171
Score = 1760 bits (953), Expect = 0.0
Identities = 1062/1115 (95%), Gaps = 5/1115 (0%)
Strand=Plus/Plus
Query 36 ctcctccttcatcttctttatcttctcttccaccattatctttctcGCCGGAAAGTCCTC 95
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||| |||||
Sbjct 58 CTCCTCCTTCATCTTCTTTATCGTCTCTTCTACCATTCTTTTTCTCGCCGGAAAATCCTC 117
Query 96 AGCCAAATTTTCTCACGACGGTGACAATAATGTGACGGCCTTGTTCCTCTTCGGAGACTC 155
|||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118 GGCCAAAATTTCTCATAACGGTGACAATAATGTGACGGCCTTGTTCCTCTTTGGAGACTC 177
Query 156 TTTCTTGGATGCAGGAAACAATAATTATATAAATACCACAACACTTGACCAAGCCAATTT 215
||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 178 TTTCTTGGATGCAGGAAACAATAATTACATTAACACCACTACACTTGACCAAGCCAATTT 237
Query 216 TCCACCTTACGGTCAAACATTCTTTGGCCTCCCCACCGGAAGATTCTCCGACGGTCGTCT 275
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCCACCTTATGGTCAAACATTCTTTGGCCTCCCCACCGGAAGATTCTCCGACGGTCGTCT 297
Query 276 CATCTCCGATTTCATTGCGGAATATGCGAATTTGCCGTTAATTCCGCCGTTTTTGGAACC 335
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CATCTCTGATTTCATTGCGGAATATGCGAATTTGCCGTTAATTCCGCCGTTTTTGGAACC 357
Query 336 GGGAAATAGTCAAAAGAAGCTTTACGGCGTCAACTTTGCGTCTGCTGGTGCTGGTGCTCT 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGGAAATAGTCAAAAGAAGCTTTACGGCGTCAACTTTGCGTCTGCTGGTGCTGGTGCTCT 417
Query 396 TGTGGAAACGTTCCAAGGTTCGGTTATAAATTTGAGAACACAATTGGATCACTACAAGGA 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 TGTGGAAACGTTCCAAGGTTCGGTTATAAATTTGAGAACACAATTGGATCACTACAAGAA 477
Query 456 AGTGGAGAGATTGTGGAGGACAAAATTTGGTAAAGAAGAAAGCAAGAAGAGAATCTCAAG 515
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 AGTGGAGAGATTATGGAGGACAAACTTTGGTAAAGAAGAAAGCAAGAAGAGAATCTCAAG 537
Query 516 AGCTGTCTATTTGATAAGCATTGGGAGCAATGACTACTCAAGCCTTTTCTTGACCAATCA 575
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 AGCTGTCTATTTGATAAGCATTGGGAGCAATGACTACTCAAGCATTTTCTTGACCAATCA 597
Query 576 ATCTCTTCCCATTTCAATGTCTCAACATGTTGACATTGTCATTGGTAATATGACTACATT 635
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 ATCTCTTCCCATTTCAATGTCTCAACATGTTGACATTGTCATTGGTAATCTGACTACATT 657
Query 636 CATTCATGAAATATACAAGATTGGAGGACGTAAATTCGGGTTCTTGAATGTGCCGGATTT 695
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 658 CATTCATGAAATATACAAGATTGGAGGACGTAAATTCGGGTTCTTGAATGTGCCTGACTT 717
Query 696 GGGTTGTTTTCCAGCTTTACGAATACTACAACCGAATAATGAT--T-CTTGCTTAAGAGA 752
|||||||||||| ||||||||||| ||||||||||| |||||| | |||||||||||||
Sbjct 718 GGGTTGTTTTCCGGCTTTACGAATTCTACAACCGAAGAATGATGATTCTTGCTTAAGAGA 777
Query 753 TGCTTCAAGATTAGCAAACATGCATAACAGAGCTCTGGCAAATCTCTTGTTTAAAATGCA 812
||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 778 TGCTTCAAGATTAGCAAGCATGCATAACAGAGCTCTGACAAATCTCTTGTTTCAAATGCA 837
Query 813 AAGACAAGTCAAGGGCTTCAAGTTCTCCCTCTTTGACATGAACAAAAGCCTTAGACTAAG 872
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 838 AAGACAAGTCAAGGGATTCAAATTCTCCCTATTTGACATGAACAAAAGCCTTAGACTCAG 897
Query 873 AATGCAACATCCTTCTAAATTTGGGTTTAAAGAAGGGGAAGAAGCATGTTGTGGGACAGG 932
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 898 AATGCAACATCCTTCTAAATTTGGGTTTAAAGAAGGGGAAGAAGCTTGTTGTGGAACTGG 957
Query 933 GAAGTGGAGAGGAGTATTCAGCTGTGGAGGGAAGAGAATTGTGAAAGAATAT-AAGTTGT 991
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 958 GAAGTGGAGAGGAGTATTCAGCTGTGGAGGGAAGAGAATTGTGAAAGAATATCAA-TTGT 1016
Query 992 GTGAGAATCCTAAAGATTATATCTTTTGGGATTCACTTCATCTCACACAGAATACTTACA 1051
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 1017 GTGAGAATCCTAAAGATTATATTTTTTGGGATTCACTTCATCTCACACAAAATACATATA 1076
Query 1052 ACCAATTTGCAAATTTAATTTGGAATGGTGGGCACAAGTCAGATTCTCTAGTGGTTGGCC 1111
||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||||| |
Sbjct 1077 ACCAATTCGCAAACTTAATTTGGAACGGTGGACACATGTCAGATTCTCTAGTGGTTGGTC 1136
Query 1112 CATACAATATCAATAAGTTATTTCAGATCCCTTGA 1146
|||||||||||||||| ||||||||||| ||||||
Sbjct 1137 CATACAATATCAATAATTTATTTCAGATTCCTTGA 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5