BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314706

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53980.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   156    2e-37


> AT1G53980.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr1:20149334-20149609 REVERSE LENGTH=276
Length=276

 Score =  156 bits (84),  Expect = 2e-37
 Identities = 122/139 (88%), Gaps = 8/139 (6%)
 Strand=Plus/Plus

Query  109  GGTGAAGTCATGATG-ATTTTTGTATCAACGCTTAAGGGGAAAACATTCGACCTTGAGGT  167
            |||||| | |||| | ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct  136  GGTGAAATGATGA-GTATTTTTGTATCAACGCTTAAGGGGAAAACATTCAACCTAGAGGT  194

Query  168  GAAGGGATCCGAGA-CGATTAAACAAGTCAAGAACATGATCCATGATCACGGTGGGCCAC  226
            ||||||||| |||| | ||| ||||||||||||||||||||||||| || |||   ||||
Sbjct  195  GAAGGGATCTGAGATC-ATTCAACAAGTCAAGAACATGATCCATGACCA-GGTC--CCAC  250

Query  227  CAGTGAACAAGCA-GAGGC  244
            ||||||| ||||| |||||
Sbjct  251  CAGTGAAGAAGCAAGAGGC  269


 Score =  154 bits (83),  Expect = 5e-37
 Identities = 103/112 (92%), Gaps = 3/112 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGATTCTTATCAAGACGGTA-AAGGGAAAGATAATAAACCTAGAGGTTGAGGATAG  59
            |||||||||||||||||||| | | ||||||||||  |||||||||||| ||||||||||
Sbjct  1    ATGAAGATTCTTATCAAGACAG-AGAAGGGAAAGACCATAAACCTAGAGCTTGAGGATAG  59

Query  60   CTCCGAGACAATCGACATCAAGATCCGTGGAGAGTCCGACCCGTCAACTGGT  111
            |||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct  60   CTCCGAGACAATCGACATCAAGATCCATGCAGAG-CCGACCCGTCAACTGGT  110



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5