BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314711

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54050.1 | Symbols:  | HSP20-like chaperones superfamily pro...   665    0.0  


> AT1G54050.1 | Symbols:  | HSP20-like chaperones superfamily protein 
| chr1:20179422-20180281 REVERSE LENGTH=680
Length=680

 Score =  665 bits (360),  Expect = 0.0
 Identities = 437/474 (92%), Gaps = 6/474 (1%)
 Strand=Plus/Plus

Query  1    ATGAGTGCTGTTGCGATTAACCACTTGTTTGGCTTACCGGAGACGATCGAGAAGCTAATT  60
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  77   ATGAGTGCTGTTGCGATTAACCACTTTTTTGGCTTACCGGAGGCGATCGAGAAGCTAATT  136

Query  61   CTCCCGATTTCCCGTTCCGGCGAAGGTAATAACGAGAGTCGTGGAGGAGGAGGAAGTAAC  120
            ||||||||||| |||||||||||| ||||||||||||||||||||  | ||||||||| |
Sbjct  137  CTCCCGATTTCTCGTTCCGGCGAAAGTAATAACGAGAGTCGTGGA--A-GAGGAAGTAGC  193

Query  121  AACAATATCCCAATCGACATTTTGGAATCTTCCAAAGAATACATATTTTATCTCGATATC  180
            || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  194  AATAATATCCCAATAGACATTTTGGAATCTCCCAAAGAATACATATTTTATCTCGATATC  253

Query  181  CCCGGAATCTCCAAATCCGATATCCAGGTTACTGTGGAGGAGGAGAGGACTTTGGTGATA  240
            |||||||| || ||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct  254  CCCGGAATTTCAAAATCAGATATCCAGGTTACAGTGGAGGAAGAGAGGACTTTAGTGATA  313

Query  241  AAGAGTAATGGGAAGAGAAAGAGAGATGATGATAATGAGAGTGAAGAAGGATCTAAGTAC  300
            ||||||||||||||||| |||||||||||||   |||||||||||||||| |||||||| 
Sbjct  314  AAGAGTAATGGGAAGAGGAAGAGAGATGATG---ATGAGAGTGAAGAAGGGTCTAAGTAT  370

Query  301  ATTAGACTTGAGAGGAGACTTGCTCAGAATCTGGTTAAGAAGTTCCGATTACCGGAAGAT  360
            |||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct  371  ATTAGACTCGAGAGGAGACTTGCTCAGAATTTGGTTAAGAAGTTCCGGTTACCAGAAGAT  430

Query  361  GCTGACGTGGCTGCTGTTACGGCCAAATATCAAGAAGGGGTTTTGTCAGTTGTTGTCAAG  420
            |||||  ||||| |||| ||||| |||||||||||||| |||||| |||||||| |||||
Sbjct  431  GCTGATATGGCTTCTGTAACGGCTAAATATCAAGAAGGTGTTTTGACAGTTGTTATCAAG  490

Query  421  AAGTTACCGCCTCAGCCGCCGAAACCTAAGACTGTTCAAATCGCTGTTTCTTGA  474
            ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  491  AAGCTACCGCCACAGCCGCCGAAACCTAAGACTGTTCAAATCGCTGTTTCTTGA  544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5