BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314716

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54095.1 | Symbols:  | Protein of unknown function (DUF1677)...   505    2e-142


> AT1G54095.1 | Symbols:  | Protein of unknown function (DUF1677) 
| chr1:20192962-20193867 FORWARD LENGTH=830
Length=830

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 404/465 (87%), Gaps = 18/465 (4%)
 Strand=Plus/Plus

Query  1    ATGACTGTGAATTTAATGGTGATCACCGAATCCAAGACGTCGGAGATAGAATTTTTGAGA  60
            ||||||||||||||||||| |||| | ||||| ||| |||||||| ||| ||||   |||
Sbjct  234  ATGACTGTGAATTTAATGGCGATCGCTGAATCAAAGCCGTCGGAGGTAGGATTTGCAAGA  293

Query  61   TGTGAATGTTGCCGTATGAAGGAGGAATACACGGCGGCG-TATATAGAGAGCGTACGGTG  119
            || ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  294  TGCGAATGTTGCGGTATGAAGGAGGAATACACGGCGG-GTTATATAGAGAGCGTACGGTG  352

Query  120  TCTATACGCCGG-AATATTTATCTGTGGTCTCTGTTCCGAGGCTGTGAAGTACGAGATTT  178
            |||||||||||| || |||||| ||||||||||| || ||||| || |||||||||||||
Sbjct  353  TCTATACGCCGGGAA-ATTTATTTGTGGTCTCTGCTCTGAGGCAGTTAAGTACGAGATTT  411

Query  179  TCCGTTGGGGGAAAAAGA-AGAGACAAATCAGCATCGACGAGGCTTTAGCGATTCATATG  237
            ||||||| || ||||| | |||||| |||  || ||||||||||||| ||||||||||||
Sbjct  412  TCCGTTGTGGAAAAAA-ACAGAGACGAATTGGCGTCGACGAGGCTTTGGCGATTCATATG  470

Query  238  AAGTTCTGCGGCGAGTTTATTGCTTCTCCCTCTCCGACCGTTGATTTCATATCGGTGGTG  297
            ||||| ||| |||||||| |||||||||| |||||||| |||||||||||||  |   | 
Sbjct  471  AAGTTTTGCAGCGAGTTTGTTGCTTCTCCGTCTCCGACGGTTGATTTCATATTTGCCATC  530

Query  298  GGAG-G-TATTTTCAGGAGAAGATTAATTCTGAATTTGCCAAGTGTCGTGACGTCAGCAG  355
            |||| | |||||  || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct  531  GGAGAGATATTTA-AG-AGAAGATTAATTCTGAATTTGCCAAGTGTCTTGACGTCAGCAG  588

Query  356  AG-CTGTTGCCTCCGACTGTTGACGGTGGAGAGGTTTGTGCTACGGCGGTGATTGGTGGG  414
             | | |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct  589  CGTC-GTTGCCGCCGGCTGTTGACGGTGGAGAGGTTTGTGGTACGGCGGTGATTGGTGGG  647

Query  415  GCTGGGACTGGGAGCTGTTTACCTGCTTTGTCCGGAGGTGTGTAG  459
            ||||| |     |||||||||||||||||||| |||||||| |||
Sbjct  648  GCTGG-A-----AGCTGTTTACCTGCTTTGTCGGGAGGTGTTTAG  686



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5