BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314742
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55140.1 | Symbols: | Ribonuclease III family protein | chr... 621 3e-177
> AT1G55140.1 | Symbols: | Ribonuclease III family protein | chr1:20572405-20574348
REVERSE LENGTH=828
Length=828
Score = 621 bits (336), Expect = 3e-177
Identities = 363/376 (97%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 490 ATATATGCTCGTCGGCATTTTCTTTTTCCTCCACTTACTATTGAAGAATATAATGACCGT 549
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 356 ATATATGCTCGTAGGCATTTTCTTTTTCCTCCACTTAGTATTGAAGAATATAATGACCGT 415
Query 550 GTTAGAGCAGTGGTGCGATGTGAAGCACAATATGCTTTGCTGCAGAAGCTTGTTGATGAT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTTAGAGCAGTGGTGCGATGTGAAGCACAATATGCTTTGCTGCAGAAGCTTGTTGATGAT 475
Query 610 GACTTCTTAACGAAAGATGAAAGGGATGTACTTCGGTGGGGAAAAAACGTAGGCTCGGTT 669
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 476 GACTTCTTAACGAAAGATGAAAGAGATATACTTCGGTGGGGAAAAAACGTAGGCTCGGTT 535
Query 670 AAAACACGGTCAACTAGACGTGCTGGTGTTGCTGTTTATAACAAGGCCTCTTCATTGGAA 729
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 536 AAAACACGGTCAACTAGACGTGCCGGTGTTGCTGTTTATAACAAGGCCTCATCATTGGAA 595
Query 730 ACACTAATTGGGTATTTGTATCTATCAAACGGGAAAAGATTGGAAGAAATAATGCAGAAG 789
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 596 ACACTAATTGGGTATTTGTATCTATCAAACGGGAAAAGACTGGAAGAAATGATGCAGAAG 655
Query 790 CTAGGATTCTCAAGTGGTTCTTCAACAGAGAGAATGATTAAGGAAGCTGGCA-AGAATAA 848
|||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||
Sbjct 656 CTAGGATTCTCAAGTGGTTCTTCAACAGAGAGAATGGTTAAGGAAGCTGGCTCA-AACAA 714
Query 849 ACCATCTTTCAAATAA 864
||||||||||||||||
Sbjct 715 ACCATCTTTCAAATAA 730
Score = 435 bits (235), Expect = 4e-121
Identities = 316/351 (90%), Gaps = 21/351 (6%)
Strand=Plus/Plus
Query 1 ATGGCGATTCTATCAGCGAGCTCTACTATCGTGAGAGCTGCTTTAGATACGCAGCCGAAG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 17 ATGGCGATTCTATCAGCGAGCTCTACTATAGTGAGAGCTGCTTTAGATACGCAGCCGAAG 76
Query 61 CTCCGATACAATCCCAATGCGCCGCGAAATGTCAAG---AATT-T-A----AGCTCTTTC 111
||||||||||||||||||||||| || ||||| ||| |||| | | || |||||
Sbjct 77 CTCCGATACAATCCCAATGCGCCACGCAATGTTAAGAAAAATTCTAATTTGAGTTCTTTT 136
Query 112 GTTCCACCGTCGTCTCCGTCTTCATCTTCTCCGGCGACAAACTTAACAACAGGAACAAAG 171
||||||||||||||||| |||||||||||||||||||||||||| | | | |
Sbjct 137 GTTCCACCGTCGTCTCCTTCTTCATCTTCTCCGGCGACAAACTT----A-A-G--C---- 184
Query 172 GTCTCCGTTTCTGATTTGCTTAAACGTCCCGCAAGCAAAGATATTGGTGATGGATTTGAT 231
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 185 GTCTCCGTTTCTGATTTACTCAAACGTCCTGCAAGCAAAGATATTGGTGATGGATTTGAT 244
Query 232 GATACTTGTATTGGATATGAGAAATGGTTTCCAAGTCCACCAAAAGTGGAGAAACCTAGA 291
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GATACTTGTGTTGGATATGAGAAATGGTTTCCAAGTCCACCAAAAGTGGAGAAACCTAGA 304
Query 292 TCTGTCTTCAATGCTGCCTCATTAGCTTATATAGGCGATTCTATCTACGAG 342
|||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 305 TCTGTCTTCAATGCTGCCTCATTAGCTTATATTGGCGATTCAATCTATGAG 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5