BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314745

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G15025.1 | Symbols:  | Beta-galactosidase related protein | ...   523    6e-148


> AT2G15025.1 | Symbols:  | Beta-galactosidase related protein 
| chr2:6501126-6501704 REVERSE LENGTH=579
Length=579

 Score =  523 bits (283),  Expect = 6e-148
 Identities = 486/579 (84%), Gaps = 33/579 (6%)
 Strand=Plus/Plus

Query  1    ATGATCTTCTCTCTAAG-GAGAGCTGATTACCGAAACTTCTCCAATCCCTTTTCCCCGTT  59
            ||||| ||||||||| | | ||| |||||||||||| |||| |||||  ||||| || ||
Sbjct  1    ATGATTTTCTCTCTACGTG-GAGATGATTACCGAAATTTCTTCAATCATTTTTCTCCATT  59

Query  60   TCCTCTGAATACAGAATCTGAACAAGTGTTATCCAACGTTTTTAAGGTTGATATTCATGA  119
            ||| |||||||| |||||||| || |||||| |||||| |||||||||||||||||||||
Sbjct  60   TCCGCTGAATACTGAATCTGAGCATGTGTTACCCAACGATTTTAAGGTTGATATTCATGA  119

Query  120  AATCAAAGGTTTGAGGAACTATGGCATTATGA-TCCCGTCTCTATGGAGCGGTGGTTACC  178
            |||||||||||||||||||||||| ||||||| ||| | ||| ||||||||||| |||||
Sbjct  120  AATCAAAGGTTTGAGGAACTATGGAATTATGAGTCCTG-CTCCATGGAGCGGTGCTTACC  178

Query  179  TAAA-ATTCCTCAACT-CTTTCCCTCTAACCTCACTCGACGACAGAACCAGC-TTAACCT  235
             |||  ||||| |||| ||| || || |||| | | |  | | | || || | |||||||
Sbjct  179  -AAAGCTTCCTTAACTCCTTACCTTCAAACC-CGC-C--C-A-ACAA-CA-CTTTAACCT  229

Query  236  CTCTCTTTGCCGATGAGCAATTCCAACTCGCTCTTCTCGTACCGGCGAGAACCTCGGCTA  295
            ||||| ||| ||||||||||  ||| ||||  | |||||| ||||||||||||||| |||
Sbjct  230  CTCTCCTTGTCGATGAGCAAACCCAGCTCG--C-TCTCGTGCCGGCGAGAACCTCGACTA  286

Query  296  TGGAACTC-TATTCAACGTCACTTAGTCTTTTGACCGTGACTATTGTATCATCTAACGCC  354
            ||||| || | |||||||||||||||||||||||||||| | ||||| || |||||||  
Sbjct  287  TGGAA-TCGTTTTCAACGTCACTTAGTCTTTTGACCGTGGCCATTGTTTCGTCTAACGT-  344

Query  355  TC-GTCCGTGGATGACTCTTCGACAAACCGTGTTATCATTTGCACCAATTTGCTTCATAG  413
            || ||  || ||||||| ||||||||||||||||| || ||||||||||| |||| ||||
Sbjct  345  TCCGTATGTAGATGACTTTTCGACAAACCGTGTTACCACTTGCACCAATTCGCTTTATAG  404

Query  414  CTTTGGCCTCCAAGCTCTCATGGATCCCTTGTCGAACTAt-ttttgctatt-tttgtgta  471
            ||||||| ||||| ||||||||||||| |||||||||||| |||| || || ||| ||||
Sbjct  405  CTTTGGCTTCCAAACTCTCATGGATCCTTTGTCGAACTATCTTTT-CT-TTCTTTATGTA  462

Query  472  gcatttgctttaacctttgtttgttgttgctacttt-gttttAAGCCTT-TCTATCCTTG  529
            |||||||||| ||||||||| ||||||||||| ||| | |||||||||| | |||| |||
Sbjct  463  GCATTTGCTTCAACCTTTGTCTGTTGTTGCTA-TTTCGCTTTAAGCCTTGT-TATCTTTG  520

Query  530  TACCCCTGGCTACTT-TGAACCTTGTTTCTATTGGATGA  567
            || || |  |||||| | |||||||||| ||||||||||
Sbjct  521  TATCCTTAACTACTTGT-AACCTTGTTTTTATTGGATGA  558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5