BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314765

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55475.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   538    1e-152


> AT1G55475.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G13480.1); Has 
35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr1:20711514-20713310 FORWARD LENGTH=1365
Length=1365

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 339/363 (93%), Gaps = 0/363 (0%)
 Strand=Plus/Plus

Query  1    ATGATCAACTGTTTAAAAGACTCAATACATGTTTTGATGAGTGTTTTGCTATCTACTAGT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  464  ATGATCAACTGTTTAAAAGACTCAATACATGTTTTGATGAGTGTTTTGCTTTCCACTAGT  523

Query  61   GATGATGATGATGATCATGAAGAGGTTCTTGAACTTGTCGATGGTCATAGGAATGCTGAG  120
            |||||||||||||||||||||||| |||| |||| ||| ||||||| || ||||||||||
Sbjct  524  GATGATGATGATGATCATGAAGAGATTCTCGAACATGTGGATGGTCTTACGAATGCTGAG  583

Query  121  GTTAGAGAAGAAGTAGTTGCAAAGGAAGACGGAGGTCAAATTGTTGGTGACACTCTCACT  180
            | |||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||
Sbjct  584  GATAGAGAAGAAGTAGATGCAAAGGAAGAAGAAGGTCAAATTGTTGGGGACACTCTCACT  643

Query  181  CTGAAAAGTAGTCTTCGAAAAGCGGATTCAAATTCAACAGAAGCTGAGAAGAGGGAGAAG  240
            || ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  644  CTCAAAAGTAGTCTTCGAAAGGTTGATTCAAATTCAACAGAAGCTGAGAAGAGGGAGAAG  703

Query  241  AAGAAGGTACAATGGGTGGATGTGATTGGGAAGGAACTTGCTGAGATTCGAGAATTCGAA  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  704  AAGAAGGTACAATGGGTGGATGTGATTGGGAAGGAACTTGCTGAGATTCGAGAATTTGAA  763

Query  301  CCTAGTGAAGAAGATGACATTGACTCTGATCGGGGGAAAACCTGTGTTTGTGTTATCCTG  360
            |||||||| |||||||| ||||| |||||||| || ||||||||||||||| ||||||||
Sbjct  764  CCTAGTGATGAAGATGATATTGATTCTGATCGAGGCAAAACCTGTGTTTGTATTATCCTG  823

Query  361  TGA  363
            |||
Sbjct  824  TGA  826



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5