BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314773 Length=942 Score E Sequences producing significant alignments: (Bits) Value AT3G13410.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1031 0.0 AT1G55546.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 438 4e-122 > AT3G13410.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:4361857-4364262 REVERSE LENGTH=1402 Length=1402 Score = 1031 bits (558), Expect = 0.0 Identities = 782/888 (88%), Gaps = 24/888 (3%) Strand=Plus/Plus Query 70 ACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAAATGGATG-- 127 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 232 ACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAG 291 Query 128 --T--AAATTATCAAGTTATGTCTGCAAAGGATCTAGTAGACTCTGTTTTTACTCAAGGA 183 | ||||||||| || |||||||||||||||||||| | |||||||| ||||||||| Sbjct 292 GCTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGA 351 Query 184 GGCTGGTCTAATTTTCTGTGCTCGGAGAAAAACCTTCAGCAACCTGTTGATGTTGCACTC 243 || ||||| || ||||||||||| ||||| || ||| |||||||||||||||||||||| Sbjct 352 GGTTGGTCAAACTTTCTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTT 411 Query 244 GTGTTCATTGGCAGAGAGTTACTGTCTTCAGATGTTTCTTCAAATCGGAACTCGGATCCT 303 |||||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||| Sbjct 412 GTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCT 471 Query 304 GCCCTTGTTAATATTTTGAAGAATCTGTATACAGCTTCCAATTTCTCATTGGCATTCCCG 363 ||||||||||| | ||||| ||||| | |||||||||||| ||||||||||||||||| Sbjct 472 GCCCTTGTTAACACATTGAATAATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCA 531 Query 364 TATATTGCTGCACCAGAGGAGGAAAGGATGGAAAATTTGTTGCTTTCAGGGCTTAAAGAA 423 ||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct 532 TATATTGCTGCTCCAGAGGAAGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAA 591 Query 424 GCTTGTGCTCA-CAATGTAGGAGTCACCAATGTCGTGTTCTCAGACTCGTG-TTTCGTTG 481 |||||| | || |||||||||||||| |||| ||||||||||||| ||||| ||| |||| Sbjct 592 GCTTGTCC-CAACAATGTAGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTT-GTTG 649 Query 482 AGGATGGAACAATTCAGAAACTATC-GAATGTGCAGTCTTTCAAAGATCATTTAG-TTGC 539 |||||||||||||||||||||| || || | |||||||||||||||||||||| | |||| Sbjct 650 AGGATGGAACAATTCAGAAACTTTCAGACT-TGCAGTCTTTCAAAGATCATTT-GCTTGC 707 Query 540 TAGAAAAGAAACGAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGCTCTGGGGGATC 599 ||||| |||||| || |||||||||||||||||||||||||||||||| || | ||| || Sbjct 708 TAGAAGAGAAACAAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCCGAGGGTTC 767 Query 600 TGAATC-A-TCAAGTCAATCTG-ACCAGTCACATTCAGATCGTGAAATCATCTCTG-AGC 655 |||||| | | | ||||| ||| || ||||||||||||| ||||||| | ||| || | | Sbjct 768 TGAATCGAAT-A-GTCAAGCTGGAC-AGTCACATTCAGAGCGTGAAAGCTTCT-TGGAAC 823 Query 656 TTGTTAGTTCAGTGGAGCAGTCTGAAACTAAATACACAGCTCTATATGTTTCTGATCCTT 715 |||||||||| || || || || | | |||||| |||||||| |||||||||||||||| Sbjct 824 TTGTTAGTTCTGTAGAACAATCCGGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTT 883 Query 716 ATTGGTACACTTCATACCAAACTCTCCAAAGGTTTTTGGCTGAAGCCGCTACAGGAAACA 775 |||||||||| || ||| ||||||||||||||||| | |||||| | |||| |||||||| Sbjct 884 ATTGGTACACATCTTACAAAACTCTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACA 943 Query 776 CCACAGCTGAAGCTACTACAACCTGTGATGAACTCTGCAAATTTAAGTCATCACTCTTGG 835 || ||||| | |||| ||||||||||||||||||||||||||||||||| |||| Sbjct 944 GTACTCCTGAAATTGCTACTGGCTGTGATGAACTCTGCAAATTTAAGTCATCACTTTTGG 1003 Query 836 AGGGTAT-CTTAGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGTTGTATG 894 |||| || || |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1004 AGGGCATACT-AGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGCTGTATG 1062 Query 895 GCGGGTATTGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA 942 |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1063 GCGGGTATCGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA 1110 > AT1G55546.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:20743828-20745109 FORWARD LENGTH=396 Length=396 Score = 438 bits (237), Expect = 4e-122 Identities = 265/279 (95%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 46 GATTTTGGATTAGCTTCACCTTCTACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAG 105 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 109 GATTTTGGATTAGCTTCACCTTCCACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAG 168 Query 106 TCTGCTAATGGTGAAATGGATGTAAATTATCAAGTTATGTCTGCAAAGGATCTAGTAGAC 165 | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 169 TATGCTAATGGTGAAACGGATGTAAATTATCAAGTCATGTCTGCAAAGGATCTAGTAGAC 228 Query 166 TCTGTTTTTACTCAAGGAGGCTGGTCTAATTTTCTGTGCTCGGAGAAAAACCTTCAGCAA 225 |||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 229 TCTGTTTTCACTCTAGGAGGTTGGTCTAATTTTCTGTGCTCGGAGAAAAAACTTCAGCAA 288 Query 226 CCTGTTGATGTTGCACTCGTGTTCATTGGCAGAGAGTTACTGTCTTCAGATGTTTCTTCA 285 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 289 CCTGTTGATGTTGCACTCGTGTTCATTGGCAGAGAGTTATTGTCTTCAGATGTTTCTTCA 348 Query 286 AATCGGAACTCGGATCCTGCCCTTGTTAATATTTTGAAG 324 |||| |||||||||||||| ||||||||| | |||||| Sbjct 349 AATCAGAACTCGGATCCTGTCCTTGTTAACACATTGAAG 387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46064712799 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5