BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314773
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13410.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1031 0.0
AT1G55546.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 438 4e-122
> AT3G13410.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G55546.1);
Has 49 Blast hits to 49 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
chr3:4361857-4364262 REVERSE LENGTH=1402
Length=1402
Score = 1031 bits (558), Expect = 0.0
Identities = 782/888 (88%), Gaps = 24/888 (3%)
Strand=Plus/Plus
Query 70 ACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAAATGGATG-- 127
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 232 ACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAG 291
Query 128 --T--AAATTATCAAGTTATGTCTGCAAAGGATCTAGTAGACTCTGTTTTTACTCAAGGA 183
| ||||||||| || |||||||||||||||||||| | |||||||| |||||||||
Sbjct 292 GCTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGA 351
Query 184 GGCTGGTCTAATTTTCTGTGCTCGGAGAAAAACCTTCAGCAACCTGTTGATGTTGCACTC 243
|| ||||| || ||||||||||| ||||| || ||| ||||||||||||||||||||||
Sbjct 352 GGTTGGTCAAACTTTCTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTT 411
Query 244 GTGTTCATTGGCAGAGAGTTACTGTCTTCAGATGTTTCTTCAAATCGGAACTCGGATCCT 303
|||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 412 GTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCT 471
Query 304 GCCCTTGTTAATATTTTGAAGAATCTGTATACAGCTTCCAATTTCTCATTGGCATTCCCG 363
||||||||||| | ||||| ||||| | |||||||||||| |||||||||||||||||
Sbjct 472 GCCCTTGTTAACACATTGAATAATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCA 531
Query 364 TATATTGCTGCACCAGAGGAGGAAAGGATGGAAAATTTGTTGCTTTCAGGGCTTAAAGAA 423
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 532 TATATTGCTGCTCCAGAGGAAGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAA 591
Query 424 GCTTGTGCTCA-CAATGTAGGAGTCACCAATGTCGTGTTCTCAGACTCGTG-TTTCGTTG 481
|||||| | || |||||||||||||| |||| ||||||||||||| ||||| ||| ||||
Sbjct 592 GCTTGTCC-CAACAATGTAGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTT-GTTG 649
Query 482 AGGATGGAACAATTCAGAAACTATC-GAATGTGCAGTCTTTCAAAGATCATTTAG-TTGC 539
|||||||||||||||||||||| || || | |||||||||||||||||||||| | ||||
Sbjct 650 AGGATGGAACAATTCAGAAACTTTCAGACT-TGCAGTCTTTCAAAGATCATTT-GCTTGC 707
Query 540 TAGAAAAGAAACGAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGCTCTGGGGGATC 599
||||| |||||| || |||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 708 TAGAAGAGAAACAAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCCGAGGGTTC 767
Query 600 TGAATC-A-TCAAGTCAATCTG-ACCAGTCACATTCAGATCGTGAAATCATCTCTG-AGC 655
|||||| | | | ||||| ||| || ||||||||||||| ||||||| | ||| || | |
Sbjct 768 TGAATCGAAT-A-GTCAAGCTGGAC-AGTCACATTCAGAGCGTGAAAGCTTCT-TGGAAC 823
Query 656 TTGTTAGTTCAGTGGAGCAGTCTGAAACTAAATACACAGCTCTATATGTTTCTGATCCTT 715
|||||||||| || || || || | | |||||| |||||||| ||||||||||||||||
Sbjct 824 TTGTTAGTTCTGTAGAACAATCCGGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTT 883
Query 716 ATTGGTACACTTCATACCAAACTCTCCAAAGGTTTTTGGCTGAAGCCGCTACAGGAAACA 775
|||||||||| || ||| ||||||||||||||||| | |||||| | |||| ||||||||
Sbjct 884 ATTGGTACACATCTTACAAAACTCTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACA 943
Query 776 CCACAGCTGAAGCTACTACAACCTGTGATGAACTCTGCAAATTTAAGTCATCACTCTTGG 835
|| ||||| | |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 944 GTACTCCTGAAATTGCTACTGGCTGTGATGAACTCTGCAAATTTAAGTCATCACTTTTGG 1003
Query 836 AGGGTAT-CTTAGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGTTGTATG 894
|||| || || |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1004 AGGGCATACT-AGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGCTGTATG 1062
Query 895 GCGGGTATTGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA 942
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GCGGGTATCGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA 1110
> AT1G55546.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G13410.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:20743828-20745109 FORWARD LENGTH=396
Length=396
Score = 438 bits (237), Expect = 4e-122
Identities = 265/279 (95%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 46 GATTTTGGATTAGCTTCACCTTCTACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAG 105
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 109 GATTTTGGATTAGCTTCACCTTCCACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAG 168
Query 106 TCTGCTAATGGTGAAATGGATGTAAATTATCAAGTTATGTCTGCAAAGGATCTAGTAGAC 165
| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 169 TATGCTAATGGTGAAACGGATGTAAATTATCAAGTCATGTCTGCAAAGGATCTAGTAGAC 228
Query 166 TCTGTTTTTACTCAAGGAGGCTGGTCTAATTTTCTGTGCTCGGAGAAAAACCTTCAGCAA 225
|||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 229 TCTGTTTTCACTCTAGGAGGTTGGTCTAATTTTCTGTGCTCGGAGAAAAAACTTCAGCAA 288
Query 226 CCTGTTGATGTTGCACTCGTGTTCATTGGCAGAGAGTTACTGTCTTCAGATGTTTCTTCA 285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 289 CCTGTTGATGTTGCACTCGTGTTCATTGGCAGAGAGTTATTGTCTTCAGATGTTTCTTCA 348
Query 286 AATCGGAACTCGGATCCTGCCCTTGTTAATATTTTGAAG 324
|||| |||||||||||||| ||||||||| | ||||||
Sbjct 349 AATCAGAACTCGGATCCTGTCCTTGTTAACACATTGAAG 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5