BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314794
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55800.1 | Symbols: | Domain of unknown function (DUF2431) ... 673 0.0
AT1G55805.1 | Symbols: | BolA-like family protein | chr1:20858... 597 1e-169
AT1G55790.1 | Symbols: | Domain of unknown function (DUF2431) ... 571 6e-162
> AT1G55800.1 | Symbols: | Domain of unknown function (DUF2431)
| chr1:20856922-20858235 REVERSE LENGTH=945
Length=945
Score = 673 bits (364), Expect = 0.0
Identities = 473/523 (90%), Gaps = 17/523 (3%)
Strand=Plus/Plus
Query 379 AGACACAGAGACGATGATGAACACGTATGGCTCAAACACTATTCATCCAAGCATCAGATA 438
||| ||||||||| ||||||| | || ||| |||||||||||||||||||||| ||||||
Sbjct 25 AGAGACAGAGACGGTGATGAAGAAGTGTGGGTCAAACACTATTCATCCAAGCACCAGATA 84
Query 439 CTTCTAGTAGGCGAAGGAGATTTCTCCTTCTCTTGCAGCTTAGCCACTTGCTTCGGCTCT 498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 CTTCTCGTAGGCGAAGGAGATTTCTCCTTCTCTTGCAGCTTAGCCACTTGCTTCGGCTCT 144
Query 499 GCTTCCAATATCTACGCTTCCTCTCTCGATTCATTCGATTATAAACCTGTTGACAAAGGT 558
|||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 145 GCTTCCAATATCTATGCTTCCTCTCTCGATTCATACGATTATAAACCTGTTAACAAAGGT 204
Query 559 TGTAGCTTTATGTTTGATTTCCTCAGTTGTTGCATGTCTTTTATGGTAATTGAAGCAGAT 618
|| ||||||| | | |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 205 TGCAGCTTTAAGCTCGATTTCCTCAGTTGTTGCATGTCTTTTATGGTAATTAAACCAGAT 264
Query 619 GATGTTGTTAGAAAGTACAAGAAGGCAAGATCAAATCTTGAAACTTTGAAGAGACTTGGA 678
||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 265 GATGTGGTTAGAAAATACAAGAATGCAAGATCAAATCTTGAAACATTGAAGAGACTTGGA 324
Query 679 GCTTTCCTTTTACATGGAGTTGATGCTACCAAACTGC-TACTCCATCCTGATCTTCATTA 737
||||||||||||||||||||||||||||||| ||||| | || |||||||||||| |||
Sbjct 325 GCTTTCCTTTTACATGGAGTTGATGCTACCACACTGCATTTTC-ATCCTGATCTTCGTTA 383
Query 738 TAGAAGATTTGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCAT-GGCAAAGAGT 796
||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 384 TAGAAGATTCGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCACAGG-AAAGAGT 442
Query 797 CTGATCCCTGTCAAATACA-C----TGCTGCAACTTTG-GGAATGT-TTTAAAAGATTTA 849
||||||||||||||||||| | ||||||||||||| ||||| | |||||| |||||
Sbjct 443 CTGATCCCTGTCAAATACAACCAGCTGCTGCAACTTTGAGGAATTTGTTTAAA-GATTTT 501
Query 850 TTACATATT-CTTTGTCTCCATATGCTAAGAGCTGATGGAGAA 891
|||||| | | | | | |||||||||||||||||||||||
Sbjct 502 TTACATGGTGCAA-G-C-C-ATATGCTAAGAGCTGATGGAGAA 540
Score = 313 bits (169), Expect = 4e-84
Identities = 279/328 (85%), Gaps = 24/328 (7%)
Strand=Plus/Plus
Query 977 AACGTGTGGCATTCGAGAAGAGAAATTACCCAGGTTATGAGAATAAGAGGGGAGATGGGT 1036
||| || ||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 539 AACTTGAGGCGTTCGAGAAGAGAAACTACCCTGGTTATGAGAATAAGAGAGGAGATGGGT 598
Query 1037 CTAGATGTGACCAACCTTTTCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAAATTCTCTC 1096
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 CTAGATGTGACCAACCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCTC 658
Query 1097 -TCGTGGCTAAAGAGCTTTATGCAGAGAAGGTGAAATGGAGAGAAGAGAAGGAAGGAGAA 1155
| || || || || |||||||||||||||||||| ||| || ||| |
Sbjct 659 GT-GTCGCCAAGGAACTTTATGCAGAGAAGGTGAA--GGA-AGTAGA-A----------- 702
Query 1156 TCAAAGTATCCCCAAGATTTATCAACTCGGGGGATGAATAACAAACATGCCCGTTTTGAA 1215
||||||| ||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 703 TCAAAGTGTCCCCGAGAGTTATCAACTCGGGCGATGAATAAGAAACATGCCCGTTTTGAA 762
Query 1216 GATAGCTCGATACATCTTGAATTGCCCAGATGCACTGAAA-GAA-CAAAACATCATCTTT 1273
|| |||||||||||||||||| |||| ||||||||| ||| | ||||| | | ||
Sbjct 763 GACAGCTCGATACATCTTGAACTGCCAAGATGCACT-AAACGGTTCAAAAGAG--T-TT- 817
Query 1274 CTCTTGAAATGCATAATGGAGAATTACA 1301
||||||||||||||||||||||||||||
Sbjct 818 CTCTTGAAATGCATAATGGAGAATTACA 845
Score = 143 bits (77), Expect = 6e-33
Identities = 87/92 (95%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1387 GTACAAGCTAGTCAAGAACCGTTCCCCAAACGCTCTCTCCGCTTCAGTGGAGTTTCTCAT 1446
||||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 852 GTACAAGCTAGCCAAGAACCGTTCCCTGAACGCTCTCTCCGATTCAGAGGAGTTTCTCAT 911
Query 1447 GGAATTCATAACGGGAGAGTACGAAAAATGTT 1478
||||||||||||||||||||||||||||||||
Sbjct 912 GGAATTCATAACGGGAGAGTACGAAAAATGTT 943
> AT1G55805.1 | Symbols: | BolA-like family protein | chr1:20858723-20859439
REVERSE LENGTH=717
Length=717
Score = 597 bits (323), Expect = 1e-169
Identities = 368/389 (95%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 1 ATGTTTTCATCTTCGATTAGGTTAATCGTATCTGGATCCCACCGGACTCAAACCCTAAAA 60
||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 2 ATGTTTTCATCTTCGATTAGGTTAATCGTATCTGGGTTCCACCGGACTCAACCCCTAAAA 61
Query 61 TCGCC-GTCAAATTCTCCGAGCGTCTTCATCTCCGTACCTAAATTCTTTAACTCTGAGTC 119
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 62 TCGCCGGT-AAATTCTCCGAGCGTCTTCATCTCCGTACCTAAATTCTTCAACTCTGAGTC 120
Query 120 AAATTCGACGGGAACCGGTTCAAGATCCGTAGCGATGAGCAGCGTTGACAAAACCGGGTC 179
||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 121 AAAATCGACGGGAACTGGTTCAAGATCCGTAGCAATGAGCAGCGTTGAGAAAACCGGGTC 180
Query 180 GGATTCAGGAGCAATCGAGAATCGAGCGGGCAGGATGAGAGAGAAGCTTCAAAAAGAGCT 239
|||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GGATTCTGGAGCAATAGAGAATCGAGCGAGCAGGATGAGAGAGAAGCTTCAAAAAGAGCT 240
Query 240 CGAACCAGTGGAGCTAGTGATCGAAGATGTTTCGTATCAGCACGCAGGTCACGCCGGAAT 299
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CGAACCAGTGGAGTTAGTGATCGAAGATGTTTCGTATCAGCACGCTGGTCACGCCGGAAT 300
Query 300 GAAAGGTAGAACCGACGGA-GAGACGCATTTTAATGTGAAGATCGTTTCTAAAGGATTCC 358
||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GAAAGGTAGAACCGACG-ATGAGACGCATTTCAATGTGAAGATCGTTTCTAAAGGATTC- 358
Query 359 GAGG-AATGAATCTGGTGAAGAGACACAG 386
|||| ||||||| ||||||||||||||||
Sbjct 359 GAGGGAATGAATTTGGTGAAGAGACACAG 387
> AT1G55790.1 | Symbols: | Domain of unknown function (DUF2431)
| chr1:20852324-20856122 REVERSE LENGTH=1769
Length=1769
Score = 571 bits (309), Expect = 6e-162
Identities = 482/561 (86%), Gaps = 29/561 (5%)
Strand=Plus/Plus
Query 616 GATGATGTTGTTAGAAAGTACAAGAAGGCAAGATCAAATCTTGAAACTTTGAAGAGACTT 675
|||| ||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 240 GATGTTGTGGTTAGAAAGTACAAGAAGGCAAGATCAAACCTTAAAACTTTGAAGAGACTT 299
Query 676 GGAGCTTTCCTTTTACATGGAGTTGATGCTACCAAACTGCTA-CTCCATCCTGATCTTCA 734
|||||||| ||||||||||||||||||||||||| ||||| | | || ||||| ||||
Sbjct 300 GGAGCTTTACTTTTACATGGAGTTGATGCTACCACACTGC-ATTTTCACCCTGACCTTCG 358
Query 735 TTATAGAAGATTTGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCATGGCAAAGA 794
|||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||| |||
Sbjct 359 TTATAGAAGATTTGATCGCGTCATCTTCAACTTCCCTCACGCCGGTTTCCACGGCAGAGA 418
Query 795 GTCTGATCCCTGTCAAATACACTGCTGCAA-CTTTGGGAA-T-GT-TTTAAAAGATTTAT 850
||||||| ||| || || || | | || | | | ||| | || ||| ||||| |
Sbjct 419 GTCTGATTCCTCTC--TTATAC-G--G-AAGCATAGAGAACTGGTGTTT---GGATTT-T 468
Query 851 TACATATTCTTTGTC--TCCATATGCTAAGAGCTGATGGAGAAGTTCATGTCTCTCACAA 908
| || | | || | || | ||||||||||| |||| ||||||||||||||||||||
Sbjct 469 T-CA-A-T-GGTG-CAAGCCGTTTGCTAAGAGCTAATGGGGAAGTTCATGTCTCTCACAA 523
Query 909 AAACAAAGCACCTTTTTGTCATTGGAATCTTGAGGAGCTCGCTAGCAGATGCTTTCTTGT 968
|||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||
Sbjct 524 GAACAAAGCACCTTTTTCTGAGTGGAATCTCGAGGAGCTCGCTAGCAGATGCTTTCTTGT 583
Query 969 GTTGATTCAACGTGTGGCATTCGAGAAGAGA-AATTACCCAGGTTATGAGAATAAGAGGG 1027
|||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||| |
Sbjct 584 GTTGATTCAACGTGTGGCCTTCGAGAAGA-ACAATTACCCTGGTTATGAGAATAAGAGAG 642
Query 1028 GAGATGGGTC-TAGATGTGACCAACCTTTTCTTTTGGGAGAGTGCAGTACTTTCAAGTTC 1086
|||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 643 GAGATGGG-CGTAGATGTGACCAACCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTC 701
Query 1087 AAATTCTCTC-TCGTGGCTAAAGAGCTTTATGCAGAGAAGGTGAAATGGAGAGAAGAGAA 1145
| |||||||| | || ||||| || |||||||||||||| |||| || |||||||| |||
Sbjct 702 AGATTCTCTCGT-GTCGCTAAGGAACTTTATGCAGAGAAAGTGAGATCGAGAGAAGTGAA 760
Query 1146 GGAAGGAGAATCAAAGTATCC 1166
|||| ||||||||| ||||||
Sbjct 761 GGAACGAGAATCAATGTATCC 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5