BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314800
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55870.1 | Symbols: ATPARN, AHG2 | Polynucleotidyl transfera... 3264 0.0
> AT1G55870.1 | Symbols: ATPARN, AHG2 | Polynucleotidyl transferase,
ribonuclease H-like superfamily protein | chr1:20895605-20898422
FORWARD LENGTH=2191
Length=2191
Score = 3264 bits (1767), Expect = 0.0
Identities = 1972/2073 (95%), Gaps = 6/2073 (0%)
Strand=Plus/Plus
Query 1 ATGCGCCGGCACAAGCGATGGCCTTTGAGGCCTCTCGCCTGCAGCTTCAGCTCCTCGGCG 60
|||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||
Sbjct 59 ATGCGCCGGCACAAGCGATGGCCTTTGAGGTCTCTTGTCTGCAGCTTCAGCTCCTCTGCG 118
Query 61 GCGGAGACAGTTACTACTTCAACGGCTGCTTCGGCGACGGCGGCTTTTCCGTTGAAGCAT 120
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 119 GCGGAGACAGTTACTACTTCAACGGCAGCTTCAGCGACGGCGGCTTTTCCGTTGAAGCAT 178
Query 121 GTAACGAGGTCGAACTTCGAGACGACACTGAATGATCTGCGTTCACTCGTAAAGGCTGCG 180
|| || |||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 179 GTGACAAGGTCGAACTTCGAGACGACGCTGAATGATCTACGCTCACTCGTAAAGGCTGCA 238
Query 181 GATTTCGTGGCGATTGACCTTGAGATGACTGGTGTGACAAGCGCTCCGTGGCGTGACTCA 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 239 GATTTCGTGGCGATTGACCTTGAGATGACTGGCGTGACAAGCGCTCCGTGGCGAGACTCC 298
Query 241 TTAGAGTTCGACCGCTACGACGTCAGATACCTCAAAGTCAAAGACTCCGCCGAGAAATTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTAGAGTTCGACCGCTACGACGTCAGATACCTCAAAGTCAAAGACTCCGCCGAGAAATTC 358
Query 301 GCCGTCGTTCAGTTCGGCGTCTGTCCCTTTCGCTGGGATTCTCGAACTCAGTCATTCGT- 359
|||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 359 GCCGTCGTTCAGTTTGGTGTCTGTCCCTTTCGTTGGGATTCTCGTACTCAGTCATTCGTG 418
Query 360 TTCTCACCCGCACAATTTCTTTGTATTTCCTCGTCAAGAGCTCACATTTGATCCACCAGC 419
| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 TCCT-ACCCGCACAATTTCTTTGTATTTCCTCGTCAAGAACTCACATTTGATCCACCAGC 477
Query 420 TCATGAATTTCTCTGTCAGACAACATCAATGGATTTTCTTGCCAAGTATCAGTTTGATTT 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCATGAATTTCTCTGTCAGACTACATCAATGGATTTTCTTGCCAAGTATCAGTTTGATTT 537
Query 480 CAATACCTGCATACATGAAGGAATATCTTATTTGTCCAGACGACAAGAGGAAGAGGCAAG 539
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 CAACACCTGCATACATGAAGGAATATCTTATTTGTCCAGACGAGAAGAGGAAGAGGCAAG 597
Query 540 TAAGCGTTTGGAAATGCTACATGGCGAGGAGGGAATTGATTCATCCGGTGAAACTGAAGA 599
|||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 598 TAAGCGTTTGAAAATGCTACACGGCGAGGACGGAATTGATTCATCGGGTGAAACTGAAGA 657
Query 600 TTTAAAGTTGGTGCGATTGGCAGATACTCTTTTCGCTGTAAGGATGGAGAAAATGCTGAA 659
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 658 GTTAAAGTTGGTGCGATTGGCAGATGTTCTTTTCGCTGCAAGGATGGAGAAATTGCTGAA 717
Query 660 TGAATGGCGGTCTGGCTTGTTACACGGTGGGAATGCGTCCTCTGAGTTTCCGAGGATCTC 719
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 718 TGAATGGCGGTCTGGCCTGTTACATGGTGGGAATGCGTCCTCTGAGTTTCCGAGGATTTC 777
Query 720 AAATGGTTC-GACTCAGAGTATGGAAACTGTGTTTCACCATATGCGTCCAGCTCTCAGTC 778
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 AAATGGTTCAAAC-CAGAGTATGGAAACTGTGTTTCACCATATGCGTCCTGCTCTCAGTC 836
Query 779 TGAAGGGTTTCACTTCTCATCAGCTCAGAGTTATTAACTCGGTTTTAAGAAAGCATTTTG 838
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 837 TGAAGGGTTTCACTTCTCATCAGCTCAGAGTTCTTAACTCGGTTTTAAGAAAGCATTTTG 896
Query 839 GAGATCTTGTGTACATACATTCAAATGAT-AAAGATTCCTGTTCACAAGGCTTTGTTGTC 897
||||||||||||||||||||||||||||| |||| ||| | ||||| || | |||||||
Sbjct 897 GAGATCTTGTGTACATACATTCAAATGATAAAAG-TTCTTCTTCACGAGACATTGTTGTG 955
Query 898 TATACTGATTCAGAATCCGACAAGGAAAATCTCATGAAGGAGGCAAAGGATGAACGCAAG 957
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 956 TATACTGATTCAGATTCCGACAAGGAAAACCTCATGAAGGAGGCAAAGGACGAACGCAAG 1015
Query 958 AGATTAGCAGAAAGAAAAATACAATCTGCAATCGGGTTCCGTCAAGTGATTGATCTGCTT 1017
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGATTGGCAGAAAGAAAAATACAATCTGCAATCGGGTTCCGTCAAGTGATTGATCTGCTT 1075
Query 1018 GCTTCAGAGAAAAAGTTGATTGTTGGTCACAATTGTTTCCTCGATATTGCACATGTATAC 1077
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GCTTCAGAGAAAAAGCTGATCGTTGGTCACAATTGTTTCCTCGATATTGCACATGTATAC 1135
Query 1078 AGCAAATTTGTGGGTCCTCTTCCTTCAACAGCTGAGAAATTCGTCGCCTCCATTAACAGT 1137
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1136 AGCAAATTTGTGGGTCCTCTTCCTTCAACAGCTGAGAAATTCGTGGCCTCCATTAACAGT 1195
Query 1138 CACTTTCCTTACATTGTTGACACCAAAATACTCTTAAACGTGAATCCAATGTTGCATCAG 1197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CACTTTCCTTATATTGTTGACACCAAAATACTCTTAAACGTGAATCCAATGTTGCATCAG 1255
Query 1198 CGGATGAAAAAGTCCAGTACATCACTATCTTCTGCGTTTTCCTCGTTATGTCCGCAAATC 1257
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1256 CGGATGAAAAAGTCCAGTACATCACTGTCTTCCGCGTTTTCCTCGTTATGTCCGCAAATC 1315
Query 1258 GAGTTTTCTTCAAGAAGCTCTGACTCGTTTCTTCAGCAGCGTGTCAATATTGATGTTGAG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1316 GAGTTTTCTTCAAGAAGCTCTGACTCGTTTCTTCAGCAGCGTGTCAATATTGACGTTGAA 1375
Query 1318 ATAGACAACGTTAGGTGTTCTAACTGGAATGCAGGAGGAAAGCACGAAGCTGGTTATGAT 1377
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1376 ATAGACAACGTTAGGTGTTCTAACTGGAATGCAGGAGGAAAACACGAAGCCGGTTATGAT 1435
Query 1378 GCTTTCATGACAGGTTGCATCTTTGCGCAGGCATGCAATCATCTCGGTTTCGACTTCAAA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1436 GCTTTCATGACAGGTTGCATCTTTGCGCAGGCATGCAATCATCTCGGTTTTGACTTCAAA 1495
Query 1438 CAGCATTCGCAATTAGATAACTTTGCCCAGAACGAGAAACTTGAAAAGTACATCAACCGT 1497
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CAGCATTCGCAGTTAGATGACTTTGCCCAGAACGAGAAACTTGAAAAGTACATCAACCGT 1555
Query 1498 CTTTATCTCAGCTGGACAAGAGGTGATATCATCAACCTTCGAACAGGCCATAGTAATGCA 1557
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1556 CTTTATCTCAGCTGGACAAGAGGTGATATCATCGACCTTCGAACAGGCCATAGTAATGCA 1615
Query 1558 GATAACTGGCGAGTCTCAAAGTTCAAATACGAGAACATTGTCCTCATCTGGAACTTCCCA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GATAACTGGCGAGTCTCAAAGTTCAAATACGAGAACATTGTCCTCATCTGGAACTTCCCA 1675
Query 1618 CGAAAACTTAAGGCTAGAGAGATCAAAGAATGCATATGCAAAGCCTTTGGCTCTGCTTCT 1677
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CGAAAACTTAAGGCGAGAGGGATCAAAGAATGCATATGCAAAGCCTTTGGCTCTGCTTCT 1735
Query 1678 GTCACCTCGGTCTACCATGTGGATGACTCTGCGGTTTTTGTCTTGTTTAAGAACTCAGAA 1737
|||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1736 GTCACCTCTGTCTACCACGTGGACGACTCTGCGGTTTTTGTCCTGTTTAAGAACTCAGAA 1795
Query 1738 CTCGTCTGGGACTTCTTAACGCTCAAGCGGGAGCTGGAGTCAACCGATGGTCCAGTTTCG 1797
|| ||||||||||||||| | ||||||||| |||||||||||| ||| |||||||| ||
Sbjct 1796 CTTGTCTGGGACTTCTTAGCACTCAAGCGGCAGCTGGAGTCAAGCGACGGTCCAGTCTCA 1855
Query 1798 GTTCTTCACCCTTTATCCAAGATCCTCGAAGGAGGAAACACTGGAGCTGCAGACTACGAA 1857
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1856 GTTCTTCACCCTTTATCCAAGATCCTTGAAGGAGGAAACACTGGAGCTGCAGACTACGAA 1915
Query 1858 GCTTACAAAGAGATTTGCAGCTCAAACATCTCAAAGATCCTATTCTCTGACCAAGCTGAA 1917
|| ||||||||||||||||||||| || ||||| || || | ||||||||||||||||||
Sbjct 1916 GCATACAAAGAGATTTGCAGCTCACACGTCTCAGAGGTCATGTTCTCTGACCAAGCTGAA 1975
Query 1918 ACAGTTGGTGTCAAATCAAGAACAAGACCGGACCCACAAGGCGAGACTGAGAGAAGAGAG 1977
||||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||
Sbjct 1976 ACAGTTGGTGTCAAATCAAGAACAAGACCCAACGCACAATGCGAGACTGAGACAAGAGAG 2035
Query 1978 GAGAACACAGTCGCTGTGACTCACAAAGCATCGGATTTGATCGATGCGTTTTTGGCCAAT 2037
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2036 GAGAACACAGTCACTGTGACTCACAAAGCATCGGATTTGATTGATGCGTTTTTGGCCAAT 2095
Query 2038 AGAGAGGAAGTCGAAACTGCTACGACTAATTAA 2070
|||| ||||||||||||||||||| |||||||
Sbjct 2096 AGAGTTGAAGTCGAAACTGCTACGAGTAATTAA 2128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102609913980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5