BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314809
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55960.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 1550 0.0
AT3G13062.2 | Symbols: | Polyketide cyclase/dehydrase and lipi... 689 0.0
AT2G01372.1 | Symbols: | Pseudogene of AT3G13062 | chr2:169967... 178 1e-43
> AT1G55960.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:20927643-20930017 REVERSE
LENGTH=1723
Length=1723
Score = 1550 bits (839), Expect = 0.0
Identities = 1085/1196 (91%), Gaps = 47/1196 (4%)
Strand=Plus/Plus
Query 9 CTGGGCTTTGTCTTTCTTCTCCGAAGAACTTTCCCGGCGAGCTCTTTCTGATTCTTATTT 68
|||||||||||||||||||||||| |||||||| ||||||||| |||| |||| ||||||
Sbjct 210 CTGGGCTTTGTCTTTCTTCTCCGACGAACTTTCTCGGCGAGCTGTTTCCGATTGTTATTT 269
Query 69 ATGGGCCACCGCGATTTCGcttctcttaatccttctatttcatatcttcttttcctctaa 128
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 270 ATGGACCACCGCGATTTCGCTTCTCTTAATCCTTCTCCTTCATATCTTCTTTTCCACTAA 329
Query 129 atttcgcttcttcacttct--t-cttcttcttc-tc--cttc-AC--CTAC--CGAATCA 177
||||||||||||||||||| | |||||||||| || |||| | || | | ||
Sbjct 330 ATTTCGCTTCTTCACTTCTGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCC 389
Query 178 GT-TTC----TCA--TGCCATAAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGA 230
| | | ||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 390 CTCTACAGAATCAGTTCCCGCGAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGA 449
Query 231 AGATTTGAAATTTCTGATCGAGAATTT---GGAGGAAACAAATGATTCTACGGAGATATG 287
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 450 AGATTTGAAATTTCTGATCGAGAATTTGGAGGAGGAAACAAATGATTCCACGGAGATATG 509
Query 288 GGAAAATGTTATTCACAAAAGCAACCATCGCATTTCATACACTGCTAAACGCTGCAAACC 347
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 510 GGAACATGTTATTCACAAAAGCAACGATCGCATTTCATACTCTGCTAAACGCTGCAAACC 569
Query 348 CAAAGATGGTGGTGGTCCTATGAAGTACCTAAGTGTTACGGTCTTCGAGGATTGCTCTGC 407
||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 570 CAAAGATGGCGGTGGTCCTATGAAGTACCTAAGTGTCACGGTCTTCGAGGGTTTCTCTGC 629
Query 408 AGAGATTGTGAGGGATTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGT 467
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AGAGATTGTGAGGGACTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGT 689
Query 468 TGTTGAGCATGAGCAGTTGCAGGTTGACAGTAGTACCGGAATTGAGATTGGTCGCACAAT 527
|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||
Sbjct 690 GGTTGAGCATGAGCAGTTGCAGGTTGATAGTAATACTGGAATTGAGATTGGTCGCACCAT 749
Query 528 CAAAAAGTTTCCCTTGTTGACATCAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGG 587
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 750 TAAAAAGTTTCCCTTGTTGACATCGAGAGAGTACGTTCTAGCTTGGAGATTGTGGCAAGG 809
Query 588 AAAGG-G--CAAGTTTTACTGTTTCACAAAGGAATGTGATCACAATATGGTGCCGCAACA 644
||||| | ||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 810 AAAGGAGAAGAAGTTCTACTGTTTCACAAAGGAATGTGATCACAATATGGTACCACAACA 869
Query 645 GAGGAATTACGTACGTGTAAG---C--T--AT-T--TT--AG-AT----C-TGTTCCCGG 686
|||||| || ||||||||||| | | || | || | || | ||||||||
Sbjct 870 GAGGAAGTATGTACGTGTAAGTTACTTTAGATCTGGTTGGCGAATCAGGCAAGTTCCCGG 929
Query 687 TCGAAATGCTTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGAT 746
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TAGAAATGCGTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGAT 989
Query 747 GGCGAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCT 806
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GGCCAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCT 1049
Query 807 TTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTTTATCTGCTGTCACCTT 866
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1050 TTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTT 1109
Query 867 AATGAAAAAGGTTCCATCAGAGTTAGAAACTCAGACAGATAATGTCACAGCCTCCATTGG 926
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1110 AATGAAAGAGGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCA-TGG 1168
Query 927 -AACAAGTAGTGGTGAAGGACTGTTAAGTCATGTTGTA---GCCAAACAGAAGAAAAAAT 982
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 1169 AAACAAGTAGTGGTGAAGGAGTGTTGAGTCATGTTGTAGCCGCCAAACAGAAGAAAAAAA 1228
Query 983 TGAGAAAGCCATCAAAGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCT 1042
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TGAGAAAGCCATCAACGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCT 1288
Query 1043 GTTTGTCCCGTGGTCACTCCGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGA 1102
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 GCTTGTCCCGTGGTCCCTCAGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGA 1348
Query 1103 AGCTGAACAAACGTGGAACTTCTCTGAATCAGACCATCCAGAACACCAGCATTTAA 1158
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1349 AGCTGAACAAACGTGGAACTTCTCTGAATCAGACCACCCAGACCACCACCATTTAA 1404
> AT3G13062.2 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:4184569-4187453 FORWARD
LENGTH=1716
Length=1716
Score = 689 bits (373), Expect = 0.0
Identities = 877/1109 (79%), Gaps = 80/1109 (7%)
Strand=Plus/Plus
Query 63 TTATTTATGGGCCACCGCGATTTCGcttctcttaatccttctatttc-atatcttctttt 121
||||| |||||||||| | | | ||| |||| || ||||| | | || ||||| |||
Sbjct 301 TTATTGCTGGGCCACCGTGCTCGCACTTGTCTTCATTCTTCTCTACCAAT-TCTTCCTTT 359
Query 122 cctc-taaatttcgcttcttcacttcttcttcttcttctccttcACCTACCGAATCAGTT 180
|| | ||||| || ||||||| || | |||||||| |||| ||| || || |||
Sbjct 360 CC-CGGAAATTCCGATTCTTCA-GTC--ATGCTTCTTCTTCTTCCCCTGTCGTCTCGGTT 415
Query 181 TCTC-ATGC-CATAAACTCTCAATCAAGG-ATATC--C-AAACTAGTCTCTGATGAAGAT 234
|||| || | | | | ||| ||||| ||| ||||| | | ||| || ||||||||||||
Sbjct 416 TCTCAAT-CTC-TCAGCTCCCAATC-AGGAATATCTACTACACTTGTTTCTGATGAAGAT 472
Query 235 TTGAAA-TTTCTGA-TCGAGAATTTGGAGGAAACAAATGATTCTACGGAGATATGGGAAA 292
| ||| ||||| || | || |||| ||||| || ||| | | ||||||||||||
Sbjct 473 CT-AAAGGGTCTGATTC-AAAAATTGGGGGAAAGAAGTGAGGATGCTGAGATATGGGAAG 530
Query 293 ATGTTATTCACAAAAGCAACCATCGCATTTCATACACTGCTAAACGCTGCAAACCCAAAG 352
|||||||| | |||||||||| ||| || || |||||||||||| |||||||| || ||
Sbjct 531 ATGTTATTAAGAAAAGCAACCCTCGTATCTCCTACACTGCTAAATGCTGCAAA-CC-AAC 588
Query 353 ATGGTGGTGGTCCTATGAAGTACCTAAGTGTTACGGTCTTCGAGGATTGCTCTGCAGAGA 412
| | |||| |||| |||||||| || ||| || || || ||||||||||| |||||
Sbjct 589 A-GATGGTAGTCCCATGAAGTATCTGAGTACAACTGTGTTTGAGGATTGCTCCCCAGAGG 647
Query 413 TTGTGAGGGATTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGTTGTTG 472
|| ||||||| ||||||||||||||||| || ||||||| |||||| |||||||| ||||
Sbjct 648 TTTTGAGGGACTTTTACATGGACAATGAATACAGGAAACAATGGGACAAGACTGTGGTTG 707
Query 473 AGCATGAGCAGTTGCAGGTTGACAGTAGTACCGGAATTGAGATTGGTCGCACAATCAAAA 532
|||||||||| |||||||||||||||| || || ||||||||||||||||| || ||||
Sbjct 708 AGCATGAGCAATTGCAGGTTGACAGTAATAGTGGGATTGAGATTGGTCGCACTATAAAAA 767
Query 533 AGTTTCCCTTGTTGACAT-CAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGGAAAG 591
|||||||||||||||| | |||| ||||| ||| |||| |||| ||||||| | || |||
Sbjct 768 AGTTTCCCTTGTTGAC-TCCAAGGGAGTATGTATTAGCGTGGAAATTGTGGGAGGGGAAG 826
Query 592 GGCAAGTTTTACTGTTTCA-CAAAGGAATGTGATCACAATATGGTGCCGCAACAGAGGAA 650
| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 827 GATAAGTTTTACTGTTTCATC-AAGGAATGTGATCACAATATGGTGCCGCAACAGAGGAA 885
Query 651 TTACGTACGTGTAAGCTATTTTAGATCTG-TTCCCG-----G-----T-C--G--A--AA 692
|| ||||||||||| ||||| ||||||| || || | | | | | ||
Sbjct 886 GTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCGAATTAGGAAAGTTCCTGGTAGGAA 945
Query 693 TGCTTGTGAGAT-CAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGATGGCGA 751
||||||||||| || | || ||||||||||| ||||||| ||||||||||||||||| |
Sbjct 946 CGCTTGTGAGATACACA-TGGTTCACCAGGAGGATGCTGGATTAAATGTTGAGATGGCAA 1004
Query 752 AGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCTTTGTA 811
|||| || ||||||| ||||||||||||||||||||||||||||||||| || ||| | |
Sbjct 1005 AGCTTGCTTTCTCAAGAGGCATATGGAGTTACGTTTGTAAGATGGAAAATGCACTTCGCA 1064
Query 812 AATACATAGCAACCAGTCATAGAACCCAAGGACCCATTTTATCTGCTGTCACCTTAATGA 871
| ||||| |||||||||||| || ||||||| |||| ||||||||||| | ||||||||
Sbjct 1065 AGTACATTGCAACCAGTCATCGACCCCAAGGGCCCACATTATCTGCTGTAAGCTTAATGA 1124
Query 872 AAAAGGTTCCATCAGAGTTAGAAACTCAGACAGAT-A-ATGTCACAGCCTCCATTGG-AA 928
||||| ||||||| |||||||||| ||||||||| | || | ||| |||| | || ||
Sbjct 1125 AAAAGATTCCATCGGAGTTAGAAAGTCAGACAGACGACAT-T-ACAAACTCC-TCGGGAA 1181
Query 929 C-A--AGTAGTGGTGAAGGACTGTTAAGTCATGTTGTAGCCAAACAGAAGAAAAAATTGA 985
| | | ||||||| | | || | || | | | |||||||| ||||||| ||||
Sbjct 1182 CTACCACTAGTGGT-ATGCACAC--AGGTGAAG--G-AGCCAAACGGAAGAAACTGTTGA 1235
Query 986 GAAAGCCATCAAAGAAACTGATAGCAAAAGGTCTAGT-ACTTGTGGGCGGTGC-GATC-T 1042
||||||| |||||||||||||||||||| ||| | || ||||||||||||||| | | |
Sbjct 1236 GAAAGCCTTCAAAGAAACTGATAGCAAATGGTAT-GTTACTTGTGGGCGGTGCCGTTGGT 1294
Query 1043 G-T----T-TGTC---C-CGTGGTCACTCCGCCTTAGGTGCTAAAG-TCGCATTGGCTTA 1091
| | | || | | |||||||||||||||||||| || |||| |||| ||||||||
Sbjct 1295 GGTGCAATCTGCCTGTCTCGTGGTCACTCCGCCTTAGGGGC-AAAGGTCGCGTTGGCTTA 1353
Query 1092 CCTCTTGACGAAGCTGAACAAA-CGTGGA 1119
| ||||| ||||| ||| ||| ||||||
Sbjct 1354 CTTCTTGTCGAAGATGAG-AAAGCGTGGA 1381
> AT2G01372.1 | Symbols: | Pseudogene of AT3G13062 | chr2:169967-170613
REVERSE LENGTH=647
Length=647
Score = 178 bits (96), Expect = 1e-43
Identities = 218/269 (81%), Gaps = 40/269 (15%)
Strand=Plus/Plus
Query 352 GATGGTGGTGGTCCTATGAAGT-ACCTAAGTGTTACGGTCTTCGAGGATTGCTCTGCAGA 410
|||||||||||||||||||||| |||||||||| ||||| || || | | ||
Sbjct 143 GATGGTGGTGGTCCTATGAAGTAACCTAAGTGTCACGGTATT---TGA--G----G--GA 191
Query 411 GATTGTGAGGGATTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGTTGT 470
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 192 GATTGTGAGGGACTTTTACATGGACAATGATTATAGAAAACTATGGGATAAGAC------ 245
Query 471 TGAGCATGAGCAGTTGCAGGTTGACAGTAGTACCGGAATTGAGATTGGTCGCACAATCAA 530
| | | |||||||||||||| |||| || ||||||||||| | | ||
Sbjct 246 T--G--T---CAGTTGCAGGTTGATAGTAATAGCGGAATTGAGA----T-------T-AA 286
Query 531 AAAGTTTCCCTTGTTGACATCAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGGAAA 590
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 287 AAAGTTTCCCTTGTTGACGTCAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGGAAA 346
Query 591 GGGCAAGT--TT-TACTGTTTCACAAAGG 616
|| |||| || ||||||||||||||||
Sbjct 347 GGACAAGAAGTTGTACTGTTTCACAAAGG 375
Score = 163 bits (88), Expect = 3e-39
Identities = 94/97 (97%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 782 ACGTTTGTAAGATGGAAAACGCTCTTTGTAAATACATAGCAACCAGTCATAGAACCCAAG 841
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 550 ACGTTTGTAAGATGGAAAACGCTCTTTGTAAATACATAGCCACCAGTCATAGAACCCAAG 609
Query 842 GACCCATTTTATCTGCTGTCACCTTAATGAAAAAGGT 878
|||||||||| |||||||| |||||||||||||||||
Sbjct 610 GACCCATTTTCTCTGCTGTTACCTTAATGAAAAAGGT 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5