BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314839
Length=3342
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19820.1 | Symbols: emb2734 | ARM repeat superfamily protein... 1134 0.0
> AT5G19820.1 | Symbols: emb2734 | ARM repeat superfamily protein
| chr5:6695224-6701311 REVERSE LENGTH=3922
Length=3922
Score = 1134 bits (614), Expect = 0.0
Identities = 2320/3116 (74%), Gaps = 228/3116 (7%)
Strand=Plus/Plus
Query 346 CAACAGGA-GAGTACTAAATCTATAGCTAAGAAGGTTTGTGATACTA-TCTCTGAACTCG 403
||||| || ||| ||||||| || |||||||| |||| ||||| | |||||||||| |
Sbjct 401 CAACATGAGGAG-GCTAAATCGATCTCTAAGAAGATTTGCGATAC-AGTCTCTGAACTTG 458
Query 404 CTTCTGCGATTTTACCGGAGAATGGATGGCCGGAGTTACTTCCGTTTATGTTCCAGTGCG 463
| || | |||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 459 CATCCGGGATTTTACCGGAGAATGGATGGCCGGAGTTGCTTCCGTTTGTTTTCCAGTG-- 516
Query 464 TTGTTGCTGCTGATAATCCC-AATCTT-CAGGAATATGC-TTTGTTGATTTT--CTCTAG 518
| ||| || ||| || ||| || || ||||||| || ||| || || || ||| |
Sbjct 517 T-GTTACTTCTGTTAC-CCCTAAA-TTGCAGGAATCGGCGTTT-TTAATCTTGGCTC-A- 570
Query 519 ATTGGCTCAGTACATTGGTGAAACG-TTGATTCCTTATTTGA-GTACATTACATT-CTGT 575
|||| | |||||| |||| || || || | ||| | | | | | | | ||| | ||
Sbjct 571 ATTGTCGCAGTACGTTGGGGAGACTCTT-ACCCCTCACATCAAGGA-ACTCCATGGC-GT 627
Query 576 GTTTTCT-CAGT-CGTTGAG-A--AATTCTAC-ATCTGCTGATGTTAGAATTACGGCTTT 629
|||| || |||| | ||||| | |||||| | | || | ||||||| ||| | ||| |
Sbjct 628 GTTT-CTTCAGTGC-TTGAGTAGTAATTCTGCTAGCTCC-GATGTTAAAATCGCCGCTCT 684
Query 630 GGGTGCTGCCATTAATTTTATCCAGTGTTTGTCAAAGGCTTCCGATAGGGATATATTTCA 689
|| | |||| ||| | |||||| || | || | | || || |||| ||| ||
Sbjct 685 CAACGCCGTGATTAGTTTCGTTCAGTGTCTGGCCAACTCAACGGAGAGAGATAGATTCCA 744
Query 690 GGAT-TTGTTGCCCTT-GATGATGCAA-ACGTTGACAGAGGCGT-TGAATTCCGGGCAA- 744
||| || ||||| | |||||| || |||||||| || | | |||| ||| ||
Sbjct 745 AGATGTT-TTGCC-TGCGATGAT-CAGGACGTTGACCGAATC-TCTGAACAATGGG-AAT 799
Query 745 GAAGCAACAGCACAAGAAGCT-TTAGAGCTTCTT-ATTGAACTGGCTGGTACCGAACCGA 802
|||||||| ||||| || || || |||||| || |||||| ||||||||||||| || |
Sbjct 800 GAAGCAACTGCACAGGAGGCACTT-GAGCTT-TTGATTGAATTGGCTGGTACCGAGCC-A 856
Query 803 -GGTTT-TT-GAGGAGACAGA-TTGTGGAAATTGTTGGTTCAATGCTTCAGATTGCGGAA 858
|||| || || | | || | |||| || || |||||||| |||||||||||||| ||
Sbjct 857 CGGTTCCTTAGACG-G-CA-ACTTGTTGACATAGTTGGTTCGATGCTTCAGATTGCAGAG 913
Query 859 GCTGAGAGTTTAGAAGA-AGGA-ACGAGGCAT-TTG-GCAGTAGAATTTGTTA-TTACAT 913
||||| | || || || | ||| ||| ||| | | | || ||| || |||| |
Sbjct 914 GCTGATTCCCTCGAGGAGAGTACACGT--CATCTTGCG-ATT-GAGTTT-TTGGTTAC-T 967
Query 914 -TGGCTGAGGCACGAGAAAGAGCTCCC-GGTATGATTAGGAAA-TTGCCACAGTTCATT- 969
|||||||||| || || | || ||| |||||| | ||||| || || ||||| |||
Sbjct 968 CTGGCTGAGGCGCGTGAGCGTGC-CCCTGGTATGGTCAGGAAGCTT-CCTCAGTTTATTG 1025
Query 970 ACCAAACTCTTTAGC-GTG-TTGATGAACATGCTTTTGGATATTGAGGATGACCCCGCAT 1027
|| | | ||| || || || ||||| ||||| |||||||||||| || || || |
Sbjct 1026 AC-AGGTTGTTT-GCTGTTCTT-ATGAAGATGCTCGAGGATATTGAGGACGATCCTGCTT 1082
Query 1028 GGCACAGTGCCGAGAATGAGGATGAAGATGCTGGCGAGACCAGTAATTATGGGTTTGGAC 1087
|| |||| || |||| |||||||||||||||||||||||| || || || | | || |
Sbjct 1083 GGTACAGCGCTGAGACTGAGGATGAAGATGCTGGCGAGACAAGCAACTACAGCATGGGTC 1142
Query 1088 AAGAATGTCTAGA-CAGACTT-GCGATATCTTTGGGTGGGAATACAATTGTTCCTGTTGC 1145
|||| ||| | || | | || || || ||| |||| || || || |||||||| |||||
Sbjct 1143 AAGAGTGTTTGGATCGG--TTAGCAATTTCTCTGGGAGGAAACACCATTGTTCCGGTTGC 1200
Query 1146 CTCTGA--AGTTTTCTCGGGTTTTTTCGCAGCTTCTGAGTGGCAGAAGCACCATGCTGCT 1203
| | | |||||||| | || || || || |||||||||||||| || |||||| ||
Sbjct 1201 ATATCAGCAGTTTTCT-GC-TTACTTGGCTGCCTCTGAGTGGCAGAAACATCATGCTTCT 1258
Query 1204 CTCATTGCTCTTGCCCAAATCGCTGAAGGCTGCTCAAAGGTTATGATAAAAAACCTGGAA 1263
| ||||| ||||| || || |||||||| || |||||||| ||||||||||| || ||
Sbjct 1259 TTGATTGCACTTGCTCAGATTGCTGAAGGTTGTTCAAAGGTGATGATAAAAAATCTAGAC 1318
Query 1264 CAGGTGGTTTCTATGGTTCTGAACTCT-TTTCAGCA-TCCCCATCCTCGTGTCCGATGGG 1321
|| ||||| || |||||| ||| | | ||||| | ||| |||||||| || | ||||
Sbjct 1319 CAAGTGGTGTCAATGGTTTTGAGC-CAGTTTCAA-AGTCCTCATCCTCGCGTAAGGTGGG 1376
Query 1322 CAGCAATTAATGCAATCGGACAGTTGTCTACAGACTTAGGACCTG-TGTTACAAA-CTAA 1379
| || || ||||| || ||||||||||||||||| || || || | | || |||| | ||
Sbjct 1377 CTGCTATAAATGCGATTGGACAGTTGTCTACAGATTTGGGTCCAGAT-TTGCAAAACCAA 1435
Query 1380 ATATCATCAGTCTGTGCTGCCTGCACTGGTTGGAGCCATGGATGACTTTC-AGAACCCTC 1438
||||| || ||||| || ||||| | || || |||||||| |||| |||| || |
Sbjct 1436 C-ATCATGAGAGAGTGCTCCCCGCACTTGCTGCTGCTATGGATGA-TTTCCAGAATCCAC 1493
Query 1439 GAGTCCAGGCCCATGCTGCTTCCGCTGTTCTTAATTTCAGTGAGAATTGCACTCCAGAAA 1498
|||| ||||| ||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct 1494 GAGTGCAGGCTCATGCTGCTTCAGCAGTACTCAACTTCAGTGAAAATTGTACTCCTGAAA 1553
Query 1499 TTTTAACCCCTTATCTGGATGGAGTTATT-AGCAAGCTT-CTTGTACTGCTTCAGAATGG 1556
| || | |||||| | || ||||| | | |||||| || ||||| || || || |||||
Sbjct 1554 TATTGTCACCTTATTTAGACGGAGT-AGTGAGCAAG-TTACTTGTGCTACTACAAAATGG 1611
Query 1557 AAAACAAATGGTACAAGAGGGCGCTTTGACTGCT-TTGGCGTCAGTTGCTGATTCTTCAC 1615
||||||||||| ||||| || ||||| |||||| ||| | ||||| |||||||| ||||
Sbjct 1612 TAAACAAATGGTGCAAGAAGGAGCTTTAACTGCTCTTG-CTTCAGTGGCTGATTCATCAC 1670
Query 1616 AGGAGCTGTTCCAAAAATACTATGATGCTGTTATGCCTTA-CTTGAAAGCTATTTTGGTA 1674
|||| | || ||||| ||||||||| |||| |||||||| || ||| |||||||| |
Sbjct 1671 AGGAACACTTTCAAAAGTACTATGATACTGTCATGCCTTATCTCAAAA-CTATTTTGATG 1729
Query 1675 AATGCCAA-TGACAAAG-CTAATCGCATGCTTCGCGCTAAGTCAATGGAGTGCATTAG-C 1731
||||| || |||||| | |||| || |||||||| || || || ||||||||||| || |
Sbjct 1730 AATGC-AACTGACAA-GTCTAAGCGGATGCTTCGTGCCAAATCCATGGAGTGCATCAGTC 1787
Query 1732 TTGGTTGGAATGGCTGTTGGAAAGGAAAAATTTATGGATGATGCAA-AGCAGGTCATGGA 1790
||| |||||||||| ||||||||||| | ||| | ||| ||||| | | |||||||||||
Sbjct 1788 TTG-TTGGAATGGCAGTTGGAAAGGACAGATTCAAGGAAGATGCTAGA-CAGGTCATGGA 1845
Query 1791 AGTGCTGATGTCCTTACAAGGTTCGCA-ACTAGAAACGGATGATCCAACAACAAGCTACA 1849
|||||| ||||| || |||||||| || | | || | || ||||||| |||||| ||||
Sbjct 1846 AGTGCTAATGTCATTGCAAGGTTCTCAGA-TGGAGGCAGACGATCCAATAACAAGTTACA 1904
Query 1850 T---ACT--C-TG--C-A--------AA-TGCCTTGGAAAAGATTTTCTCCCTTACATGG 1891
| || | || | | || || || || ||||||| ||||| ||||||
Sbjct 1905 TGTTACAGGCATGGGCTAGGCTTTGCAAGTGTCTAGGTCAAGATTTCCTCCCATACATGA 1964
Query 1892 -GTGTTGTTATGCCCCCTTTGCTTCAATCAGCTCAGCTTAAGCCGGATGTTATCATTT-C 1949
| ||||| ||||| ||||||||||| |||||||| |||||||| ||||| | || || |
Sbjct 1965 AG-GTTGTGATGCCTCCTTTGCTTCAGTCAGCTCAACTTAAGCCAGATGTAA-CAATTAC 2022
Query 1950 ATCTGCAGATTCAGA---TGCAG-ATATTGATGAC-GAAGATGATAGCATTGAGACCATC 2004
|||||| |||||||| || || | | ||| | || ||||| ||||| ||||||||
Sbjct 2023 ATCTGCTGATTCAGAAGATGAAGCAGAG-GATT-CTGATGATGAAAGCATGGAGACCATT 2080
Query 2005 ACTCTTGGT-GACAAGAGAATAGGGATCAAAACTAGTGTGT-TAGAGGAGAAAG-CTACT 2061
| || ||| ||||| ||||||||||||||||| ||||| | ||||||| |||| | ||
Sbjct 2081 A-TCCTGGGCGACAAAAGAATAGGGATCAAAACAAGTGT-TCTAGAGGA-AAAGGCCACG 2137
Query 2062 GCCTGTAACATGCTGTGTTGCTATGCAGATGAGCTAAAAGAAGGGTTTTTCCCTTGGATT 2121
|| ||||||||||| ||||||||||| |||||| |||||||||| ||||| |||||||||
Sbjct 2138 GCTTGTAACATGCTTTGTTGCTATGCTGATGAGTTAAAAGAAGGATTTTTTCCTTGGATT 2197
Query 2122 GATCAGGTTGCTCCTATTTTAGTTCCTCTT-CTCAAATTTTATTTCCATGAAGAAGTTAG 2180
||||||||||| |||| || |||||| || || ||||| ||||| || |||||||||||
Sbjct 2198 GATCAGGTTGCACCTACATTGGTTCCT-TTACTGAAATTCTATTTTCACGAAGAAGTTAG 2256
Query 2181 GAAG-GCTGCAGTATCAGGTATGCCGGAGCTGTTACGTTCAGCTAAACTTGCTGTGGAGA 2239
||| || || || |||| |||||||| || | || ||||| || || || | ||||
Sbjct 2257 -AAGAGCAGCTGTTTCAGCCATGCCGGAACTAATGCGCTCAGCCAAGCTGGCAATAGAGA 2315
Query 2240 AAGGGGAATCTCA-GGGTCGTA-ATGAATCCTATATAAAGCA-CTTGAGCGACTATATAA 2296
||||||||||||| ||| || | || ||| ||| | ||||| ||| ||||| || |
Sbjct 2316 AAGGGGAATCTCAAGGG-CG-AGATCTATCATATTTGAAGCAGCTTTCT-GACTACATTA 2372
Query 2297 TACCGGCGTTGTTGGAGGCCTTGCACAAGGAGCCTGA-AGTGGAGATTTGTGCAAGCATG 2355
| || || || |||| || ||||| || || ||||| | | |||| |||| || |||
Sbjct 2373 TTCCAGCCATGCTGGAAGCTTTGCATAAAGAACCTGATACAG-AGATCTGTGTGAGTATG 2431
Query 2356 CTGGA-G-TCACTAAACGAGTG-TGTACAGATATCTGGACC-CATTCTAGATGAAAGCCA 2411
|||| | | | | || || || | | ||||| |||||| | || | |||||| | |
Sbjct 2432 TTGGAAGCT-A-TCAATGAATGCT-TGCAGATCTCTGGAAATCTTT-TGGATGAAGGGAA 2487
Query 2412 GGTGAGGGGCATTGTTGAGGAGACTAAGCACGCA-GTAAT-A--GCTAGCTCAACCAGAC 2467
| || ||| ||||| |||| ||| | ||| || || | || ||||| | ||
Sbjct 2488 AATTAGATCCATAGTTGATGAGA-TAA--A-GCAAGTTATGACCGCAAGCTCTAGTAG-- 2541
Query 2468 GGAGCGAAAGAGAAGAGAGAG--CT-AGGGCagaagactttgatgcagaagaaagcgaga 2524
| ||||| |||| ||||||| | | | | ||||||||||| || ||||| | |||
Sbjct 2542 GAAGCGAGAGAGGGGAGAGAGGGCCCATG-CTGAAGACTTTGACGCTGAAGAGGGAGAGC 2600
Query 2525 tccttaaagaagaaaatgaacaagaagaagaagTTTTTGATCAGATT-GGTGATTTACTG 2583
| ||||||| |||||||| ||||| |||||| |||||||||| | | ||||| || ||
Sbjct 2601 TTATTAAAGAGGAAAATGAGCAAGAGGAAGAAATTTTTGATCA-AGTCGGTGAAATATTG 2659
Query 2584 GGTACGTTAATAAAAACATTCAAGACCTC-TTTCCTGCCCATGTTTGATGAGCTTTCATC 2642
|| || || | || ||||||||| |||| |||| | || | || ||||| || || ||
Sbjct 2660 GGAACATTGGTTAAGACATTCAAGGCCTCATTTC-TACCTTTCTTCGATGAACTGTCCTC 2718
Query 2643 TTACATAACTCCCATGTTGGGTAGTGATAGAACAGCAGAGGAGAGAAGAATAGCTATTTG 2702
|||| ||||||| |||| ||| || |||| |||||| || |||||||| || ||||| ||
Sbjct 2719 TTACTTAACTCCTATGTGGGGAAGAGATAAAACAGCGGAAGAGAGAAGGATTGCTATATG 2778
Query 2703 TATATTTGATGATGTTGCTGAGCATTGTCGCGAAGCAGCTCTT-AAATACTATGATACCT 2761
|| ||||||||||| || || || || || ||||| || ||| ||||| ||||||||||
Sbjct 2779 CATTTTTGATGATGTAGCAGAACAATGCCGTGAAGCTGC-CTTTAAATATTATGATACCT 2837
Query 2762 -TCGTCCCTTTTCTTCTGGAAGCATGCAATGACGAGAATGTTGATATTCGGCAGGCTGCT 2820
|| ||| ||| | |||||||| ||||||||||||| || |||| |||||||||
Sbjct 2838 ATCTTCCATTTG-TACTGGAAGCTTGCAATGACGAGAGCCCAGAGGTTCGACAGGCTGCT 2896
Query 2821 GTGTATGGAATTGGAGTTTGTGCTGAGTTTGGCGGATCTGTTTTCA-GACCTCTTGTCGG 2879
|| ||||| |||| |||||||||||||||||||| ||||| |||| | |||||| | ||
Sbjct 2897 GTTTATGGGCTTGGCGTTTGTGCTGAGTTTGGCGGCTCTGTATTCAAG-CCTCTTATTGG 2955
Query 2880 AGAGGCACTCTCCAA-ATTGGATGTTGTCATTGCA-CAT-CCTAATGCACAGCAGTCTGA 2936
|||||| || || || ||| ||||||| || || | | || ||||| | ||| |||||
Sbjct 2956 AGAGGCTCTGTC-AAGATTAAATGTTGTGATA-CAGC-TGCCAAATGCTCGGCAATCTGA 3012
Query 2937 AAATGCCATGGCCTATGACAACGCTGTTTCCGCTCTTGGAAAA-ATATGTCAGTTCCACC 2995
|||||||||||| ||||| || ||||| || || | ||| ||| || || || || ||||
Sbjct 3013 AAATGCCATGGCATATGATAATGCTGTATCAGC-CGTGGGAAAGATCTGCCAATTTCACC 3071
Query 2996 GAGACAGTATTGATGCTGGA-AGG-ATTGTACCTGCCTGGTTAAACTGCTTACCGATAA- 3052
| || ||||||||| || ||| | | | ||||| ||||| ||||| || || ||||
Sbjct 3072 GTGATAGTATTGATTCTTCTCAGGTACT-T-CCTGCGTGGTTGAACTGTTTGCCTATAAG 3129
Query 3053 -AAGGG-GATACAGTTGAGGCTAAAATTGTCCATGACCAGCTTTGCTCAATGGTGGAGAG 3110
|| | | | | |||| || ||| | || ||||| ||||| ||||||||||| || ||
Sbjct 3130 CAATGATG-TCC--TTGAAGCCAAAGTGGTTCATGATCAGCTCTGCTCAATGGTTGAAAG 3186
Query 3111 ATCT-GATCGG-GATCTATTAGGGCCCAATCATCAGTACCTTCCAAAAATAGTTGC-AGT 3167
| ||| | || || ||||| |||||| | ||| | ||||| ||||| || |||
Sbjct 3187 G-CAAGAT-GTAGACCTTTTAGGCCCCAATAACCAGCATCTTCCGAAAATC-TTAATAGT 3243
Query 3168 TTTTGCTGAGGT-CTTATGTGCGGGGAGTACTCTGGCAACGGA-GCAAACAGTGAG-TAG 3224
|||||| ||||| |||| | || || | | ||| || | | | |||| || | |
Sbjct 3244 TTTTGCCGAGGTACTTACA-G-GGAAAG-A-TGTGGTGACACAAG-AGACAGC-AGGTCG 3297
Query 3225 GATGATAAATATCTTAAGACAGCTTCAACAAACATTGTCTCCATCAGCGCTCGCATCGAC 3284
||||||||||| ||||| || |||||||| ||| || | ||||| ||| | || || ||
Sbjct 3298 TATGATAAATATATTAAGGCAACTTCAACAGACACTGCCACCATCGGCGTTGGCCTCAAC 3357
Query 3285 ATGGTCATCTCTGCAACCAC-AGCAACAGCTTGCAT-TACAGTCCATCCTCTCCTC 3338
||||||| | ||| |||| | | || ||||| || | | || ||||| || |||||
Sbjct 3358 ATGGTCAACGCTGAAACC-CGAACAGCAGCTCGC-TCTCCAATCCATGCTTTCCTC 3411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166303416045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5