BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314874
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54870.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1376 0.0
> AT1G54870.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:20459006-20460647 FORWARD LENGTH=1243
Length=1243
Score = 1376 bits (745), Expect = 0.0
Identities = 924/1011 (91%), Gaps = 9/1011 (1%)
Strand=Plus/Plus
Query 1 ATGAATGTGCTGTGCCGAGTGTTCACTTCGTCAAGAGTCTTATCATCAAACTTTACGTTT 60
||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 6 ATGAATGTGTTGTGTCGAGTGTTCACTTCGTCAAGAGTCTTATCATCAAACGTTACGTTC 65
Query 61 TCGTTTTCTCAAATTCCAAACAAAACCAAGAAAACTCTACCTGAAAAGAGAAGATTATCG 120
||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||
Sbjct 66 TCGTTTTCTCAAATTCCAAACAATACCAAGAAACCTCTACTTGAAAAGAGAAGATTATCG 125
Query 121 CAGCTTGTGTGCGTAAGAGCGATGGCGACTGAGAAACAAAAACAACATGGACAACCT-GC 179
| || ||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 126 CCGCGTGTGTGCCTAAGAGCGATGGCGTCTGAGAAACAAAAACAACATGCACAACCTGGC 185
Query 180 AAAGAACATGTCATGGAA-AAAACTCCACAATTCTCTAGCTCAGATTACCAACCCTCCAA 238
|||||||||||||||||| || | ||||||||||||||||||||||||||||| |||||
Sbjct 186 AAAGAACATGTCATGGAATCAAGC-CCACAATTCTCTAGCTCAGATTACCAACCTTCCAA 244
Query 239 CAAGCTTC--GGAAAAGTGGCGTTGATAACTGGTGGAGACTCGGGGATTGGTCGAGCCGT 296
|||||||| || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 245 CAAGCTTCGTGGTAAGGTGGCGTTGATAACTGGTGGAGACTCTGGGATTGGTCGAGCCGT 304
Query 297 GGGATACTGTTTTGCACT-CGAAGGGGCTACGGTGGCTTTCACTTACGTTAAGGGGCAAG 355
|||||||||||||||| | |||||| ||||| ||||||||||||||||| ||||| ||||
Sbjct 305 GGGATACTGTTTTGCA-TCCGAAGGAGCTACTGTGGCTTTCACTTACGTGAAGGGTCAAG 363
Query 356 AGGAAAAAGATGCACATGAGACGCTACAAATGTTGAAAAAGGTAAAAACCTCGGACGCTA 415
| |||||||||||||| ||||| |||||||||||||| |||| |||||||||||| | |
Sbjct 364 AAGAAAAAGATGCACAAGAGACCCTACAAATGTTGAAGGAGGTCAAAACCTCGGACTCCA 423
Query 416 AAGAGCCCATTGCGATTCCAACGGATTTAGGATTTGACGAGAACTGCAAGAGGGTTGTTG 475
| || || || || |||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 424 AGGAACCTATCGCCATTCCAACGGATTTAGGATTTGACGAAAACTGCAAAAGGGTCGTTG 483
Query 476 ATGAGGTCGTTAACGCGTTTGGTCGCATCGATGTCTTGATCAATAACGCAGCAGAGCAGT 535
||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 484 ATGAGGTCGTTAATGCTTTTGGCCGCATCGATGTTTTGATCAATAACGCAGCAGAGCAGT 543
Query 536 ATGAAAGCAGCTCGGTCGAGGAGATTGATGAGCCTAGACTTGAGCGAGTCTTCCGTACAA 595
| || |||||| | |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 544 ACGAGAGCAGCACAATCGAAGAGATTGATGAGCCTAGGCTTGAGCGAGTCTTCCGTACAA 603
Query 596 ACATCTTCTCTTACTT-TTTCCTCACAAGGCATGCGTTGAAGCATATGAAGGAAGGAAGC 654
||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 604 ACATCTTTTCTTACTTCTTT-CTCACAAGGCATGCGTTGAAGCATATGAAGGAAGGAAGC 662
Query 655 AGCATTATCAACACCACATCAGTGAATGCCTACAAGGGAAACGCTTCGCTTCTCGACTAT 714
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 663 AGCATTATCAACACCACTTCGGTGAATGCCTACAAGGGAAACGCTTCACTTCTCGACTAC 722
Query 715 ACAGCTACAAAAGGAGCGATTGTGGCGTTTACTCGAGGGCTTGCACTTCAGCTTGCGGAG 774
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 723 ACCGCTACAAAAGGAGCGATTGTGGCGTTTACTCGAGGACTTGCACTTCAGCTAGCTGAG 782
Query 775 AAAGGAATCCGAGTCAATGGTGTGGCTCCTGGTCCGATATGGACACCACTTATCCCAGCC 834
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 783 AAAGGAATCCGTGTCAATGGTGTGGCTCCTGGTCCAATATGGACACCCCTTATCCCAGCA 842
Query 835 TCGTTCAATGAGGAGAAAATCAAGAATTTCGGGTCTGAGGTTCCGATGAAACGTGCGGGG 894
|| |||||||||||||| || |||||||| ||||||||||||||||||||| | |||||
Sbjct 843 TCATTCAATGAGGAGAAGATTAAGAATTTTGGGTCTGAGGTTCCGATGAAAAGAGCGGGT 902
Query 895 CAGCCTATTGAAGTGGCGCCTTCGTATGTTTTCTTGGCTTGTAACCATTGCTCTTCTTAC 954
||||| ||||||||||| || || |||||||||||||| |||||||| ||||||||||||
Sbjct 903 CAGCCAATTGAAGTGGCACCATCCTATGTTTTCTTGGCGTGTAACCACTGCTCTTCTTAC 962
Query 955 TTTACTGGTCAAGTTCTTCACCCCAATGGAGGAGCTGTGGTGAATGCGTAA 1005
|| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 963 TTCACTGGTCAAGTTCTTCACCCTAATGGAGGAGCTGTGGTAAATGCGTAA 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5