BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314877
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 289 5e-77
AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 270 2e-71
AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superf... 100 2e-20
> AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337
Score = 289 bits (156), Expect = 5e-77
Identities = 227/262 (87%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 841 AGAGTAGCGGGTTTAGAAGGGCTACCGAAGTTTGCTAGTTATTGTACTGTTAGATTGGCG 900
||| ||| |||||||||||||||||| ||||||||||| ||| ||||||||| ||| |||
Sbjct 910 AGATTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCG 969
Query 901 GATTACGGTGGTAAGTTGGTGGTTTTTTGGGATAAGTATGT-GCCTGCTAGTGGGTATAA 959
|| || || || ||| |||| ||||| ||||| |||||||| | |||| |||||||||||
Sbjct 970 GAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAG-CTGCAAGTGGGTATAA 1028
Query 960 GAAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATTCGCAGTGGTGAAGAGATTTC 1019
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1029 GGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTG 1088
Query 1020 GGGGAAGGTCGAGTGGTTTGATTCAGTGCTTACAGTTCCTAAGTCTTATAAATTCGTGAG 1079
|||||||||||||||||||||| | || |||||||| |||||||||||||||||||| |
Sbjct 1089 GGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCTG 1148
Query 1080 TGCTATCGCTGCTACTCTTTGA 1101
||||| |||||||| |||||
Sbjct 1149 TGCTAAATCTGCTACTGTTTGA 1170
> AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19860708-19862018 FORWARD LENGTH=1311
Length=1311
Score = 270 bits (146), Expect = 2e-71
Identities = 222/259 (86%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 845 TAGCGGGTTTAGAAGGGCTACCGAAGTTTGCTAGTTATTGTACTGTT-AGATTGGCGGAT 903
||| |||||||||||||||||| |||||| |||| |||| || |||| | |||||||||
Sbjct 960 TAGAGGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCA-ATTGGCGGAA 1018
Query 904 TACGGTGGTAAGTTGGTGGTTTTTTGGGATAAGTATGTGCCTGCTAGTGGGTATAAGAAG 963
|| || || ||| |||||||||| ||||| |||||||| ||||| |||||||||||| ||
Sbjct 1019 TATGGCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAG 1078
Query 964 AAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATTCGCAGTGGTGAAGAGATTTCGGGG 1023
||||||||||||||||||||||||||||| |||| || | ||| ||||||||| ||||
Sbjct 1079 AAGATGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGG 1138
Query 1024 AAGGTCGAGTGGTTTGATTCAGTGCTTACAGTTCCTAAGTCTTATAAATTCGTGAGTGCT 1083
|| || |||||||||||| | ||||||||||| ||||||||||| ||| || || |||||
Sbjct 1139 AACGTTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCT 1198
Query 1084 A-TCGCTGCTACTCTTTGA 1101
| | |||||||||||||||
Sbjct 1199 ACT-GCTGCTACTCTTTGA 1216
> AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:16368087-16369025 FORWARD LENGTH=882
Length=882
Score = 100 bits (54), Expect = 2e-20
Identities = 112/140 (80%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 110 ATGATTTAGTAGTAACCTGCTTAGCTCGCGTCTCGAGATCGTATCACCCAAATCTCTGC- 168
|||||||| || ||| ||||||||| |||||||| ||||| | || |||| ||||| |
Sbjct 50 ATGATTTAATATTAAACTGCTTAGCGCGCGTCTCAAGATCAAACCATCCAACTCTCT-CA 108
Query 169 TTAGTCTCCAA-AAACTTCCGCTCAATCATTGCTTCACCGGAGCTTTACCAAACCCGAAC 227
||||| | || | | || | ||| || |||||||| ||||||||||||||||||||
Sbjct 109 TTAGTATGTAAGAGA-TTTCACTCTCTCCTTGCTTCAGTAGAGCTTTACCAAACCCGAAC 167
Query 228 CCTCTTAGGACTCACCGAGA 247
||||||||| | ||||||||
Sbjct 168 CCTCTTAGGCCGCACCGAGA 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5