BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314877 Length=1101 Score E Sequences producing significant alignments: (Bits) Value AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 289 5e-77 AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 270 2e-71 AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superf... 100 2e-20 > AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:19862289-19863625 FORWARD LENGTH=1337 Length=1337 Score = 289 bits (156), Expect = 5e-77 Identities = 227/262 (87%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 841 AGAGTAGCGGGTTTAGAAGGGCTACCGAAGTTTGCTAGTTATTGTACTGTTAGATTGGCG 900 ||| ||| |||||||||||||||||| ||||||||||| ||| ||||||||| ||| ||| Sbjct 910 AGATTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCG 969 Query 901 GATTACGGTGGTAAGTTGGTGGTTTTTTGGGATAAGTATGT-GCCTGCTAGTGGGTATAA 959 || || || || ||| |||| ||||| ||||| |||||||| | |||| ||||||||||| Sbjct 970 GAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAG-CTGCAAGTGGGTATAA 1028 Query 960 GAAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATTCGCAGTGGTGAAGAGATTTC 1019 | |||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 1029 GGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTG 1088 Query 1020 GGGGAAGGTCGAGTGGTTTGATTCAGTGCTTACAGTTCCTAAGTCTTATAAATTCGTGAG 1079 |||||||||||||||||||||| | || |||||||| |||||||||||||||||||| | Sbjct 1089 GGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCTG 1148 Query 1080 TGCTATCGCTGCTACTCTTTGA 1101 ||||| |||||||| ||||| Sbjct 1149 TGCTAAATCTGCTACTGTTTGA 1170 > AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:19860708-19862018 FORWARD LENGTH=1311 Length=1311 Score = 270 bits (146), Expect = 2e-71 Identities = 222/259 (86%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 845 TAGCGGGTTTAGAAGGGCTACCGAAGTTTGCTAGTTATTGTACTGTT-AGATTGGCGGAT 903 ||| |||||||||||||||||| |||||| |||| |||| || |||| | ||||||||| Sbjct 960 TAGAGGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCA-ATTGGCGGAA 1018 Query 904 TACGGTGGTAAGTTGGTGGTTTTTTGGGATAAGTATGTGCCTGCTAGTGGGTATAAGAAG 963 || || || ||| |||||||||| ||||| |||||||| ||||| |||||||||||| || Sbjct 1019 TATGGCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAG 1078 Query 964 AAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATTCGCAGTGGTGAAGAGATTTCGGGG 1023 ||||||||||||||||||||||||||||| |||| || | ||| ||||||||| |||| Sbjct 1079 AAGATGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGG 1138 Query 1024 AAGGTCGAGTGGTTTGATTCAGTGCTTACAGTTCCTAAGTCTTATAAATTCGTGAGTGCT 1083 || || |||||||||||| | ||||||||||| ||||||||||| ||| || || ||||| Sbjct 1139 AACGTTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCT 1198 Query 1084 A-TCGCTGCTACTCTTTGA 1101 | | ||||||||||||||| Sbjct 1199 ACT-GCTGCTACTCTTTGA 1216 > AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:16368087-16369025 FORWARD LENGTH=882 Length=882 Score = 100 bits (54), Expect = 2e-20 Identities = 112/140 (80%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 110 ATGATTTAGTAGTAACCTGCTTAGCTCGCGTCTCGAGATCGTATCACCCAAATCTCTGC- 168 |||||||| || ||| ||||||||| |||||||| ||||| | || |||| ||||| | Sbjct 50 ATGATTTAATATTAAACTGCTTAGCGCGCGTCTCAAGATCAAACCATCCAACTCTCT-CA 108 Query 169 TTAGTCTCCAA-AAACTTCCGCTCAATCATTGCTTCACCGGAGCTTTACCAAACCCGAAC 227 ||||| | || | | || | ||| || |||||||| |||||||||||||||||||| Sbjct 109 TTAGTATGTAAGAGA-TTTCACTCTCTCCTTGCTTCAGTAGAGCTTTACCAAACCCGAAC 167 Query 228 CCTCTTAGGACTCACCGAGA 247 ||||||||| | |||||||| Sbjct 168 CCTCTTAGGCCGCACCGAGA 187 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53965585875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5