BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314878 Length=1059 Score E Sequences producing significant alignments: (Bits) Value AT1G54930.1 | Symbols: | GRF zinc finger / Zinc knuckle protei... 1347 0.0 > AT1G54930.1 | Symbols: | GRF zinc finger / Zinc knuckle protein | chr1:20478267-20479671 REVERSE LENGTH=1062 Length=1062 Score = 1347 bits (729), Expect = 0.0 Identities = 952/1060 (90%), Gaps = 14/1060 (1%) Strand=Plus/Plus Query 1 ATGTCAACTGGCGATTGCTTCCGTTGTCATCAACCAGGCCACTGGGCCAACAACTGTCCT 60 ||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGTCCAGTGGCGATTGCTTCCATTGTCATCAACCAGGCCACTGGGCCAAAAACTGTCCT 60 Query 61 CTCAAAACCACTACGAAACCCACCACCGCGGCCGCCGCTTCTCCGCCGGTCATTCACTGT 120 |||||||||||||||||||||||| |||| || ||| |||||||||||| |||||||||| Sbjct 61 CTCAAAACCACTACGAAACCCACCGCCGCCGCAGCCCCTTCTCCGCCGGACATTCACTGT 120 Query 121 CCATGTAACGCCGGAGCTTGCAACATTTTGACTTCCACAACTAAGAAAAACCCAAACAGG 180 || || ||||||||| ||||||||| | ||||||| | |||| ||||||||||||||||| Sbjct 121 CCCTGCAACGCCGGACCTTGCAACACTGTGACTTCTAAAACTGAGAAAAACCCAAACAGG 180 Query 181 AGATTCTACACATGCCCAAGCTGTAAATTTTTCAAGTGGTGTGATCAAGGTTTTGGGGAT 240 |||||||||||||||||||||||| || |||||||||||||||||||||||| || ||| Sbjct 181 AGATTCTACACATGCCCAAGCTGTGGATATTTCAAGTGGTGTGATCAAGGTTTAGGAGAT 240 Query 241 TGTGGATTCTTTAAATGGGAGGA---TGATAGTTTGCTTCACGAAACCGAGTTGGATTCT 297 ||||||||||||||||||||||| ||| |||||||| || ||||| |||||||| ||| Sbjct 241 TGTGGATTCTTTAAATGGGAGGATGGTGAGAGTTTGCTACATGAAACTGAGTTGGACTCT 300 Query 298 GATGGTAATGTGAAAAGGAACAGACTTGGAGTTGTGGTTGAATCAGAATTGAATCCAACT 357 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 301 GATGGTAATGTGAAAAGGAACAGACTTGGAGTTGTGGTTGAATTAGAATTGAATCCAGCT 360 Query 358 TCATCTAATGAGTCTACGACTCTTGGAAACAGAGTTGTGGATACTCTTCCAGTGAATGCA 417 ||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||| || Sbjct 361 TCATCTAGTGAGTCTAATACTCTTGGAAACAGAATTGTTGATACTCTTCCAGTGAATCCA 420 Query 418 GTCACTGTGGGAAAAGAATTGATTCCGGTTTTCGCAGGTTTCAACAATCAAGAATCGGTC 477 |||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||| Sbjct 421 GTCACTGTGGGAAAGGAATCGATTCCGGTTTTCGCAGGTTTCAACGATCAAGGATCGGTC 480 Query 478 TCCAACGGGATTGTCCCTTCATTTGATTTGATTACACTACATGACGATGCGGTTCGCCTT 537 |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 481 TCCAACAGCATTGTCCCTTCATTTGATTTGATTACACTGTATGACGATGCGGTTCGCCTT 540 Query 538 GAGACGGAAGAGCAAGTACTCCCTTTAGTTGCCCCTAAACATCTTGATCCTCAAGTGGAG 597 |||||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 541 GAGACGAAAGAGCCAGTACTCCCTTCAGTTGCCCCTAAACATCTTGATACTCAAGTGGAG 600 Query 598 CCTTTGTATGGTAAGGACAGTTATGCATCGGAGGGCGTAGCGGGTCA-TTCTGAGAACAC 656 |||||| |||||| | || || | | ||| ||||| | || | |||| ||||||| Sbjct 601 ACTTTGTGTGGTAATG-CA-TT--G----G-AGGCCGTAGAGAGT-AGTTCTCAGAACAC 650 Query 657 AAGCGATCCAGTTTTGAATGGTAGCAAAAAACCTGAGCATATACATCAACCATCTATGAC 716 |||||||| ||||||||||| || ||| |||||||||||||||||||||| | || ||| Sbjct 651 AAGCGATCTAGTTTTGAATGCTAACAACAAACCTGAGCATATACATCAACGAGCTGCGAC 710 Query 717 ATCTGGTGAAATCGAGGCCTCATTTTCAGGTGGCTCCTCCATGAAGAAACTTATTGAACA 776 ||||||||||| ||||||||||| ||||||| |||||||||||| | ||||||||| || Sbjct 711 ATCTGGTGAAACCGAGGCCTCATATTCAGGTAGCTCCTCCATGATGGTACTTATTGAGCA 770 Query 777 ATATAACTCAGAGAAGCTCAATTTCGAGAGTATATCTATGAAACATGTTGATGCGTTGAC 836 |||||| |||||||||||| || |||||||||||||||||||||||||||| |||||||| Sbjct 771 ATATAAGTCAGAGAAGCTCTATCTCGAGAGTATATCTATGAAACATGTTGAGGCGTTGAC 830 Query 837 TGCTTTTATGGATTCGTACAAGCAATTAGAGTCGCTTCGTGATAGAGCACATAGCCTCAG 896 ||| | || || |||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 831 TGCCTATACGGGTTCGTACAAGCAGTTAGAGTCGCTTCGTGATAGAGCACATAGTCTTAA 890 Query 897 GAAACAGCTACTTGAAGTAGAGAAAGAGGTGAAGCTTTACGAGGCTGAGACCTCAGAATT 956 ||| ||| ||||||| ||||||||| |||||||||||| ||||||||||||||||| || Sbjct 891 GAAGCAGTTACTTGAGGTAGAGAAACAGGTGAAGCTTTGTGAGGCTGAGACCTCAGAGTT 950 Query 957 TGCAGCAAGTCTTCAAGAAGTTTCTGGTGAAATGGCGAAATCGCAAAAGAAAATGGTGGA 1016 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 951 TGCAGCAAGTGTTCAAGAAGTTTCTGGTGAAATGGCGAAATCGCAGAAGAAAATGGTGGA 1010 Query 1017 GACGGCAGGGAAAGTAGCTAAGGAAGTGAGAGTTAACAAG 1056 || || ||||||||||||||||||||||||||| ||||| Sbjct 1011 GATAGCTGGGAAAGTAGCTAAGGAAGTGAGAGTTGACAAG 1050 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51857162985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5