BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314878
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54930.1 | Symbols: | GRF zinc finger / Zinc knuckle protei... 1347 0.0
> AT1G54930.1 | Symbols: | GRF zinc finger / Zinc knuckle protein
| chr1:20478267-20479671 REVERSE LENGTH=1062
Length=1062
Score = 1347 bits (729), Expect = 0.0
Identities = 952/1060 (90%), Gaps = 14/1060 (1%)
Strand=Plus/Plus
Query 1 ATGTCAACTGGCGATTGCTTCCGTTGTCATCAACCAGGCCACTGGGCCAACAACTGTCCT 60
||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCCAGTGGCGATTGCTTCCATTGTCATCAACCAGGCCACTGGGCCAAAAACTGTCCT 60
Query 61 CTCAAAACCACTACGAAACCCACCACCGCGGCCGCCGCTTCTCCGCCGGTCATTCACTGT 120
|||||||||||||||||||||||| |||| || ||| |||||||||||| ||||||||||
Sbjct 61 CTCAAAACCACTACGAAACCCACCGCCGCCGCAGCCCCTTCTCCGCCGGACATTCACTGT 120
Query 121 CCATGTAACGCCGGAGCTTGCAACATTTTGACTTCCACAACTAAGAAAAACCCAAACAGG 180
|| || ||||||||| ||||||||| | ||||||| | |||| |||||||||||||||||
Sbjct 121 CCCTGCAACGCCGGACCTTGCAACACTGTGACTTCTAAAACTGAGAAAAACCCAAACAGG 180
Query 181 AGATTCTACACATGCCCAAGCTGTAAATTTTTCAAGTGGTGTGATCAAGGTTTTGGGGAT 240
|||||||||||||||||||||||| || |||||||||||||||||||||||| || |||
Sbjct 181 AGATTCTACACATGCCCAAGCTGTGGATATTTCAAGTGGTGTGATCAAGGTTTAGGAGAT 240
Query 241 TGTGGATTCTTTAAATGGGAGGA---TGATAGTTTGCTTCACGAAACCGAGTTGGATTCT 297
||||||||||||||||||||||| ||| |||||||| || ||||| |||||||| |||
Sbjct 241 TGTGGATTCTTTAAATGGGAGGATGGTGAGAGTTTGCTACATGAAACTGAGTTGGACTCT 300
Query 298 GATGGTAATGTGAAAAGGAACAGACTTGGAGTTGTGGTTGAATCAGAATTGAATCCAACT 357
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 301 GATGGTAATGTGAAAAGGAACAGACTTGGAGTTGTGGTTGAATTAGAATTGAATCCAGCT 360
Query 358 TCATCTAATGAGTCTACGACTCTTGGAAACAGAGTTGTGGATACTCTTCCAGTGAATGCA 417
||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 361 TCATCTAGTGAGTCTAATACTCTTGGAAACAGAATTGTTGATACTCTTCCAGTGAATCCA 420
Query 418 GTCACTGTGGGAAAAGAATTGATTCCGGTTTTCGCAGGTTTCAACAATCAAGAATCGGTC 477
|||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||
Sbjct 421 GTCACTGTGGGAAAGGAATCGATTCCGGTTTTCGCAGGTTTCAACGATCAAGGATCGGTC 480
Query 478 TCCAACGGGATTGTCCCTTCATTTGATTTGATTACACTACATGACGATGCGGTTCGCCTT 537
|||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 TCCAACAGCATTGTCCCTTCATTTGATTTGATTACACTGTATGACGATGCGGTTCGCCTT 540
Query 538 GAGACGGAAGAGCAAGTACTCCCTTTAGTTGCCCCTAAACATCTTGATCCTCAAGTGGAG 597
|||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 541 GAGACGAAAGAGCCAGTACTCCCTTCAGTTGCCCCTAAACATCTTGATACTCAAGTGGAG 600
Query 598 CCTTTGTATGGTAAGGACAGTTATGCATCGGAGGGCGTAGCGGGTCA-TTCTGAGAACAC 656
|||||| |||||| | || || | | ||| ||||| | || | |||| |||||||
Sbjct 601 ACTTTGTGTGGTAATG-CA-TT--G----G-AGGCCGTAGAGAGT-AGTTCTCAGAACAC 650
Query 657 AAGCGATCCAGTTTTGAATGGTAGCAAAAAACCTGAGCATATACATCAACCATCTATGAC 716
|||||||| ||||||||||| || ||| |||||||||||||||||||||| | || |||
Sbjct 651 AAGCGATCTAGTTTTGAATGCTAACAACAAACCTGAGCATATACATCAACGAGCTGCGAC 710
Query 717 ATCTGGTGAAATCGAGGCCTCATTTTCAGGTGGCTCCTCCATGAAGAAACTTATTGAACA 776
||||||||||| ||||||||||| ||||||| |||||||||||| | ||||||||| ||
Sbjct 711 ATCTGGTGAAACCGAGGCCTCATATTCAGGTAGCTCCTCCATGATGGTACTTATTGAGCA 770
Query 777 ATATAACTCAGAGAAGCTCAATTTCGAGAGTATATCTATGAAACATGTTGATGCGTTGAC 836
|||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 771 ATATAAGTCAGAGAAGCTCTATCTCGAGAGTATATCTATGAAACATGTTGAGGCGTTGAC 830
Query 837 TGCTTTTATGGATTCGTACAAGCAATTAGAGTCGCTTCGTGATAGAGCACATAGCCTCAG 896
||| | || || |||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 831 TGCCTATACGGGTTCGTACAAGCAGTTAGAGTCGCTTCGTGATAGAGCACATAGTCTTAA 890
Query 897 GAAACAGCTACTTGAAGTAGAGAAAGAGGTGAAGCTTTACGAGGCTGAGACCTCAGAATT 956
||| ||| ||||||| ||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 891 GAAGCAGTTACTTGAGGTAGAGAAACAGGTGAAGCTTTGTGAGGCTGAGACCTCAGAGTT 950
Query 957 TGCAGCAAGTCTTCAAGAAGTTTCTGGTGAAATGGCGAAATCGCAAAAGAAAATGGTGGA 1016
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 951 TGCAGCAAGTGTTCAAGAAGTTTCTGGTGAAATGGCGAAATCGCAGAAGAAAATGGTGGA 1010
Query 1017 GACGGCAGGGAAAGTAGCTAAGGAAGTGAGAGTTAACAAG 1056
|| || ||||||||||||||||||||||||||| |||||
Sbjct 1011 GATAGCTGGGAAAGTAGCTAAGGAAGTGAGAGTTGACAAG 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5