BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314892

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35540.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   442    2e-123


> AT5G35540.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G27260.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:13722137-13722993 FORWARD LENGTH=570
Length=570

 Score =  442 bits (239),  Expect = 2e-123
 Identities = 388/454 (85%), Gaps = 33/454 (7%)
 Strand=Plus/Plus

Query  1    ATGAAAAGGTTTACCGCTCCGGATGAAGTGTGGGATGAGTA-TTTAA-----AGGATCTT  54
            ||||||| ||| ||| ||||||||||| ||||||||||||| || ||     ||||||||
Sbjct  1    ATGAAAATGTTCACCACTCCGGATGAAATGTGGGATGAGTACTTAAAGTTTGAGGATCTT  60

Query  55   CAACTCATATTTGGATGTGGTTTAGCTACTGGTGGTTCCGCAATTGGAATGGGTGAAACC  114
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   CAACTCATATTTGGATGTGGCTTAGCTACTGGTGGTTCCGCAATTGGAATGGGTGAAACC  120

Query  115  ACTGATGCTCGAACCTTTAGAAGTGGGGGGAGTAAAAGAGTGAAAGATAACAAAATTGAT  174
            |||||||||     |    |||       ||||    | | |  ||||||||||||||||
Sbjct  121  ACTGATGCT-----C----GAA-------GAGT----G-G-G--AGATAACAAAATTGAT  156

Query  175  GATGAAGTTTTTGAACTATCATCTCAAGAGCCAGCTGCATCGCCAGAATGTGATACGCCA  234
            ||||||||||||||||||| ||| ||||||| || |||||| ||| |||||||||  |||
Sbjct  157  GATGAAGTTTTTGAACTATTATCACAAGAGCTAGTTGCATCACCACAATGTGATATACCA  216

Query  235  CCCTTTCCAGGCACAAATCCAAAAGGACGGGTAGAAAAACTTCGTCCAAGGAAGAGGTCT  294
            | ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct  217  CTCTTTCCATGCACAAATCCAAAAGGACGGGTAGAAAAACTTCATCCAAGGAAGAGGTTT  276

Query  295  AGAACCTTAGCTACTAGCAATGCAGATAAACTGAAAACTGATGA-G-G-AGGATCCTATG  351
            ||||||| | |||||||||||  || ||| ||||||| ||| || | | |||||||||||
Sbjct  277  AGAACCTCATCTACTAGCAATATAGGTAAGCTGAAAAATGACGAAGAGGAGGATCCTATG  336

Query  352  ATCATAAATCATATTCGCTACAAAGCAGTTACCTTGATTCATTCGCTTGGAATGAAAAAT  411
            ||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  337  ATCGTGAATCATATTCGCTACGAAGCAGTTACCTTGATTCATTCACTTGGAATGAAAAAT  396

Query  412  GTCTTCATCGACATGTCGGTAGAAGAACGTTTTG  445
            ||| |||| |||||||| ||||||||||||||||
Sbjct  397  GTCCTCATAGACATGTCAGTAGAAGAACGTTTTG  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5