BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314895
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gat... 1018 0.0
AT2G46440.1 | Symbols: ATCNGC11, CNGC11 | cyclic nucleotide-gat... 802 0.0
> AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gated
channel 12 | chr2:19065716-19069569 FORWARD LENGTH=3199
Length=3199
Score = 1018 bits (551), Expect = 0.0
Identities = 1262/1587 (80%), Gaps = 122/1587 (8%)
Strand=Plus/Plus
Query 1 ATGAAAAC-CTTTGAAAACTGGAGGAAGACAAT-TATGTTA-CTTTGCTTTGCTGCTTTC 57
|||||||| | | ||||||||||||||||| | | ||||| | |||| | | ||||||
Sbjct 229 ATGAAAACAC-TCGAAAACTGGAGGAAGACCGTCT-TGTTAGC-TTGCGTGGTTGCTTTG 285
Query 58 GCTATTGATCCTTTGTTTCTCTTTATCCCTGTGATTGATTCTCATAGATTCTGCTTTACT 117
|||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||
Sbjct 286 GCTATTGATCCTTTGTTTCTGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACT 345
Query 118 TAT-GACAAGA-AGCTAG-GGCTAGCAGCTTGTGTCATTCGTACTTTTATGGACTCATTC 174
| | ||||||| | || | || || || ||||||||||||||||||||| ||| | |||
Sbjct 346 T-TCGACAAGACA-CTTGTAGC-AGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTC 402
Query 175 TATGTAATTCACATCATTTTCCGT-TC-AATAACCGAG-CTCATTGCTCCTCGTTCACAA 231
||||| |||||||||| ||| | || ||||||||| | ||||||||||||||| |||
Sbjct 403 TATGTGATTCACATCA-TTT-ATTATCTTATAACCGAGAC-CATTGCTCCTCGTTCTCAA 459
Query 232 GTATCTTTAAGAGGCGAGATAATTATGCATTCCAAGGCTACAAGGAAAA-AGCGCCTCAT 290
| |||||| ||||||||||| | ||||||| ||||||||| ||||| | || ||| |
Sbjct 460 GCATCTTTGAGAGGCGAGATTGTCGTGCATTCTAAGGCTACACTGAAAACA-CGTCTCCT 518
Query 291 CTTTCGCTTCATGGTTGACATTGCT-TCAATTCTCCCCATTCCTCA-----------TCA 338
||||| |||||| ||||||||| | || |||||||||||||||| |||
Sbjct 519 CTTTCACTTCATTGTTGACATT-ATCTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCA 577
Query 339 -----A-A--A--GTCTGCCTTGCTGGTGTCAAAG-GACATATTAAAAAAGG-TTATA-A 385
| | | |||||| | |||||||||| || || ||| | ||| || |||||
Sbjct 578 CTCTCATACCACTGTCTGCGTCGCTGGTGTCAGAGAGA-ATACT-GAAATGGATTATACT 635
Query 386 TATGTCAATATATACCAAGAATC-CTCTGTATCTATCTGCTTT-TCCAAGAAGTGACAAA 443
|| |||||||| ||||||||||| || |||| |||| ||||| | |||||||||| ||
Sbjct 636 TA-GTCAATATGTACCAAGAATCATTC-GTATGTATCCGCTTTAT-AAAGAAGTGAC-AA 691
Query 444 G-GCCTCTGGTACGGTAGTAGAAACAAAGTGGATTGGAGCTGCTTTAAACCTT-TTCCTC 501
| |||| ||||||||||| |||| |||||||| ||||||||||||||| ||| |||||
Sbjct 692 GAGCCTTTGGTACGGTAGCAGAATCAAAGTGGGCTGGAGCTGCTTTAAA-CTTATTCCTT 750
Query 502 TACATGCTTC-CGAGTTATGTGTTTGGGGGTTTCTGGTACTTCAATGCAATACAAAGGGA 560
|||||||| | | |||||||||||||||| ||| |||||||| | | ||||| ||| |||
Sbjct 751 TACATGCTGCAC-AGTTATGTGTTTGGGGCTTTTTGGTACTTGAGTTCAATAGAAA-GGA 808
Query 561 GAA-CTTATGCTGGCATGATGTGTGTGCTAGAACA--C--CTG-GAT-GCAATGTCATGA 613
|| | ||| |||| || | ||||||||| ||| | ||| || || |||| |
Sbjct 809 AAAGCAAATGTTGGCGTGCCGCGTGTGCTAGGACATCCGACTGCAATCTCACGGTCACGG 868
Query 614 ATCT-ATATTGTGCACGAGGTAGCGA-AGACAACAATCGTTTTCTGAACAATTCATGCCC 671
|||| | |||| ||||| | || | ||||||| ||| || || |||| |||||||||
Sbjct 869 ATCTGCT-TTGTAAACGAGCTGGC-AGTGACAACATTCGATTCCTCAACACTTCATGCCC 926
Query 672 ATTAATTGACCCTGGCCAAATCACAAACTCCACAGTCTTCAATTTTGGTATGTATATTGA 731
|||||| ||||||| |||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 927 ATTAATCGACCCTGCCCAAATCACAAACTCCACAGACTTCGACTTTGGTATGTATATTGA 986
Query 732 TGCATTGAAGTCAGGGGTGGTAGA-GT----CC--AGGTATTTTCCAAGGAAGTTCTTCT 784
||||||||||||||||||| |||| || || ||| ||||||| ||||| ||| |||
Sbjct 987 TGCATTGAAGTCAGGGGTGCTAGAGGTGAAACCAAAGG-ATTTTCCCAGGAAATTCGTCT 1045
Query 785 ACTGCTTTTGGTGGGGTCTTCGAAATCTTAGTGCTTTGGGTCAAAACCTGGAGACAAGCA 844
| ||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||||
Sbjct 1046 ATTGCTTTTGGTGGGGTCTCCGTAATATTAGTGCTTTGGGCCAAAACCTGGAGACAAGCA 1105
Query 845 ACTCTGTAGAGGAGATCGTGTTTGTC-ATAATCATCTGTATACT-TGGTTTACTCTTGTT 902
|||||| || |||||| | |||| | || ||||| ||| | || |||||||||||||||
Sbjct 1106 ACTCTGCAGGGGAGATTTTCTTTG-CTATCATCATATGTGT-CTCTGGTTTACTCTTGTT 1163
Query 903 TGCTTTACTCATTGGAAACGTTCAGAAGTACTTGCAATCGA-CTACGATCAA-AGTAGAT 960
|||| | |||||||||||||||||||||||||||||||| | |||| | | | |||||||
Sbjct 1164 TGCTGTGCTCATTGGAAACGTTCAGAAGTACTTGCAATC-ATCTACTA-CTAGAGTAGAT 1221
Query 961 GAAATGGAGGAGAGAAAA-AGAGACATAGAAAAGTGGATGTCTTATCGGAACCTACCCGA 1019
||||||||||||| ||| ||||||| |||||| |||||||| || ||| |||| ||
Sbjct 1222 GAAATGGAGGAGA-AAAGGAGAGACACAGAAAAATGGATGTCCTACCGGGTGATACCAGA 1280
Query 1020 CG-ATCTCAAGCAACGCATTAGGAAATACGGGGAATACACATGGAAACAAACTAGAGGCA 1078
| || | ||| |||||||||||| || | || |||| |||| | |||| | ||| |
Sbjct 1281 -GTATTTGAAGGAACGCATTAGGAGATTTGAAGATTACAAATGGCGAGAAACCA-AGGGA 1338
Query 1079 TCA-AAGAGGAAGCTCTTCTTCGTAGCCTTCCTATAGACCTCAGACTCGAAACCAAACGA 1137
| |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1339 ACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGACCTCAGACTCGAAACCAAACG- 1397
Query 1138 C-ATCTTTACCTGAATCTATTAAAGGGTGTTCCTTTGTTTGAGGGCATAGATGATGGTTG 1196
| |||||||| || || | |||||| ||||||| | | || | ||| |||||||||||
Sbjct 1398 CTATCTTTACTTGGATATGTTAAAGCGTGTTCCATGGCTTAACATCATGGATGATGGTTG 1457
Query 1197 GTTACTATCAGCAATGTGCAACCGGGTGAAGTATGTGTTCTACTCGGCAGAT-AGCTACA 1255
| ||||| ||| ||||| |||||||||||| ||||||||| | || || |||| ||
Sbjct 1458 GCTACTAGAAGCTGTGTGCGACCGGGTGAAGTCTGTGTTCTATTTAGC-GAACAGCTTCA 1516
Query 1256 TAGTAAAAGAGGGTG-ACCCAATGGAGGAAATGCTGATTATAACAAAAGGAAAACTAAAA 1314
|||| | |||||| | ||||| | ||||| ||||||||| |||| | ||| || || |||
Sbjct 1517 TAGTGAGAGAGGG-GCACCCAGTTGAGGAGATGCTGATTGTAACGAGAGGCAAGCTGAAA 1575
Query 1315 AGTACAACTAGG-TCTCATGAAATAGGTGAA-G-AACTA--------A-----AAGCA-G 1357
|||||||| || ||||||||||| |||| | ||| | | ||| | |
Sbjct 1576 AGTACAACC-GGATCTCATGAAATGGGTGTCCGCAACAATTGTTGTGACCTCCAAG-ATG 1633
Query 1358 GTGACATATGTGGAGAACTTCTCTTTAATAGTTCTTC-CCTTCCCACCTCAACCAGAACT 1416
||||||||||||||||||||||||| ||| ||||| | |||||| ||||||||||||||
Sbjct 1634 GTGACATATGTGGAGAACTTCTCTTCAATGGTTCT-CGCCTTCCTACCTCAACCAGAACC 1692
Query 1417 ATAATAACTCTT-ACCGAAGTTGAAGGTTTCACTCTCTCGCCTGATGATGTCAAGTTTGT 1475
|||| ||| || || |||||||||||||||| ||||| |||||||||| |||||||| |
Sbjct 1693 GTAATGACT-TTGACTGAAGTTGAAGGTTTCATTCTCTTGCCTGATGATATCAAGTTTAT 1751
Query 1476 AGCTTCTCATTTTAATCACCTTCAAAG 1502
|||||||||||| ||| | |||||||
Sbjct 1752 AGCTTCTCATTTAAATGTCTTTCAAAG 1778
> AT2G46440.1 | Symbols: ATCNGC11, CNGC11 | cyclic nucleotide-gated
channels | chr2:19061861-19064881 FORWARD LENGTH=2340
Length=2340
Score = 802 bits (434), Expect = 0.0
Identities = 967/1209 (80%), Gaps = 97/1209 (8%)
Strand=Plus/Plus
Query 1 ATGAAAAC-CTTTGAAAACTGGAGGAAGACAAT-TATGTTA-CTTTGCTTTGCTGCTTTC 57
|||||||| | | ||||||||||||||||| | | ||||| | |||| | | ||||||
Sbjct 321 ATGAAAACAC-TCGAAAACTGGAGGAAGACCGTCT-TGTTAGC-TTGCGTGGTTGCTTTG 377
Query 58 GCTATTGATCCTTTGTTTCTCTTTATCCCTGTGATTGATTCTCATAGATTCTGCTTTACT 117
|||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||
Sbjct 378 GCTATTGATCCTTTGTTTCTGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACT 437
Query 118 TAT-GACAAGA-AGCTAG-GGCTAGCAGCTTGTGTCATTCGTACTTTTATGGACTCATTC 174
| | ||||||| | || | || || || ||||||||||||||||||||| ||| | |||
Sbjct 438 T-TCGACAAGACA-CTTGTAGC-AGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTC 494
Query 175 TATGTAATTCACATCATTTTCCGT-TC-AATAACCGAG-CTCATTGCTCCTCGTTCACAA 231
||||| |||||||||| ||| | || ||||||||| | ||||||||||||||| |||
Sbjct 495 TATGTGATTCACATCA-TTT-ATTATCTTATAACCGAGAC-CATTGCTCCTCGTTCTCAA 551
Query 232 GTATCTTTAAGAGGCGAGATAATTATGCATTCCAAGGCTACAAGGAAAA-AGCGCCTCAT 290
| |||||| ||||||||||| | ||||||| ||||||||| ||||| | || ||| |
Sbjct 552 GCATCTTTGAGAGGCGAGATTGTCGTGCATTCTAAGGCTACACTGAAAACA-CGTCTCCT 610
Query 291 CTTTCGCTTCATGGTTGACATTGCT-TCAATTCTCCCCATTCCTCA-----------TCA 338
||||| |||||| ||||||||| | || |||||||||||||||| |||
Sbjct 611 CTTTCACTTCATTGTTGACATT-ATCTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCA 669
Query 339 -----A-A--A--GTCTGCCTTGCTGGTGTCAAAG-GACATATTAAAAAAGG-TTATA-A 385
| | | |||||| | |||||||||| || || ||| | ||| || |||||
Sbjct 670 CTCTCATACCACTGTCTGCGTCGCTGGTGTCAGAGAGA-ATACT-GAAATGGATTATACT 727
Query 386 TATGTCAATATATACCAAGAATC-CTCTGTATCTATCTGCTTT-TCCAAGAAGTGACAAA 443
|| |||||||| ||||||||||| || |||| |||| ||||| | |||||||||| ||
Sbjct 728 TA-GTCAATATGTACCAAGAATCATTC-GTATGTATCCGCTTTAT-AAAGAAGTGAC-AA 783
Query 444 G-GCCTCTGGTACGGTAGTAGAAACAAAGTGGATTGGAGCTGCTTTAAACCTT-TTCCTC 501
| |||| ||||||||||| |||| ||||| || | |||||||||||||| ||| |||||
Sbjct 784 GAGCCTTTGGTACGGTAGCAGAATCAAAGCGGGTCGGAGCTGCTTTAAA-CTTCTTCCTT 842
Query 502 TACATGCTTC-CGAGTTATGTGTTTGGGGGTTTCTGGTACTTCAATGCAATACAAAGGGA 560
|||||||| | | |||||||||| ||||| ||| ||||| || | | ||||| ||| |||
Sbjct 843 TACATGCTGCAC-AGTTATGTGTGTGGGGCTTTTTGGTATTTGAGTTCAATAGAAA-GGA 900
Query 561 GAA-CTTATGCTGGCATGATGTGTGTGCTAGAACA--C--CTG-GAT-GCAATGTCATGA 613
|| | ||| |||| || | ||||||||| ||| | ||| || || |||| |
Sbjct 901 AAAGCACATGTTGGCGTGCCGCGTGTGCTAGGACATCCGACTGCAATCTCACGGTCACGG 960
Query 614 ATCT-ATATTGTGCACGAGGTAGCG-A-AGACAACAATCGTTTTCTGAACAATTCATGCC 670
|||| | |||| ||||| | | | | ||||||| ||||||||| |||| |||||||
Sbjct 961 ATCTGCT-TTGTAAACGAGCT-G-GTAGTGACAACATTCGTTTTCTCAACACCTCATGCC 1017
Query 671 CATTAATTGACCCTGGCCAAATCACAAACTCCACAGTCTTCAATTTTGGTATGTATATTG 730
||||||| ||||||| |||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 1018 CATTAATCGACCCTGCCCAAATCACAAACTCCACAGACTTCGACTTTGGTATGTATATTG 1077
Query 731 ATGCATTGAAGTCAGGGGTGGTAGA-GT----CC--AGGTATTTTCCAAGGAAGTTCTTC 783
|||| |||||||||||||| |||| || || ||| ||||||| ||||| ||| ||
Sbjct 1078 ATGCGTTGAAGTCAGGGGTCCTAGAGGTGAAACCAAAGG-ATTTTCCCAGGAAATTCGTC 1136
Query 784 TACTGCTTTTGGTGGGGTCTTCGAAATCTTAGTGCTTTGGGTCAAAACCTGGAGACAAGC 843
|| ||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||
Sbjct 1137 TATTGCTTTTGGTGGGGTCTCCGTAATATTAGTGCTTTGGGCCAAAACCTGGAGACAAGC 1196
Query 844 AACTCTGTAGAGGAGATCGTGTTTGTC-ATAATCATCTGTATACT-TGGTTTACTCTTGT 901
||||||| || |||||| | |||| | || ||||| ||| | || ||||||||||||||
Sbjct 1197 AACTCTGCAGGGGAGATTTTCTTTG-CTATCATCATATGTGT-CTCTGGTTTACTCTTGT 1254
Query 902 TTGCTTTACTCATTGGAAACGTTCAGAAGTACTTGCAATCGA-CTACGATCAA-AGTAGA 959
||||| | |||||||||||||||||||||||||||||||| | |||||| | | ||||||
Sbjct 1255 TTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTGCAATC-ATCTACGA-CTAGAGTAGA 1312
Query 960 TGAAATGGAGGAGAGAAAA-AGAGACATAGAAAAGTGGATGTCTTATCGGAACCTACCCG 1018
||||||||| |||| |||| ||||||| |||||| |||||||| |||||| | |||| |
Sbjct 1313 TGAAATGGAAGAGA-AAAAGAGAGACACAGAAAAATGGATGTCCTATCGGGAGATACCAG 1371
Query 1019 ACG-ATCTCAAGCAACGCATTAGGAAATACGGGGAATACACATGGA-AACAAACTAGAGG 1076
| | || | ||| |||||||||||| || | || |||| ||||| || || | | |||
Sbjct 1372 A-GTATTTGAAGGAACGCATTAGGAGATTTGAAGATTACAAATGGAGAAGAACCAA-AGG 1429
Query 1077 CATCAAAGAGGAAGCTCTTCTTCGTAGCCTTCCTATAGACCTCAGACTCGAAACCAAACG 1136
|| | |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1430 CACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGACCTCAGACTCGAAACCAAACG 1489
Query 1137 AC-ATCTTT 1144
| ||||||
Sbjct 1490 -CTATCTTT 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5