BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314913
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56418.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 337 3e-92
> AT1G56418.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:21122030-21122448
FORWARD LENGTH=281
Length=281
Score = 337 bits (182), Expect = 3e-92
Identities = 219/237 (92%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAGTATGAATATGATCAAGATAACAATGATGATGGCTTTGGTACTAATGGGCGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 ATGTCGAGTATGAATATGATCAAGATAACAATGATGATGGCTTTGGTACTAATGGGCGTG 101
Query 61 AGAGCAATGACTGTGACTCAGAGTCAAGAAACAGAC-GTCAAGTTCGACTGGACTAATGG 119
||||||| |||||| |||||| ||||||||||||| | ||||||||| |||| ||||||
Sbjct 102 AGAGCAACGACTGTAACTCAGTCTCAAGAAACAGACCG-CAAGTTCGAGTGGAATAATGG 160
Query 120 AATGGACTGGAACCCGAGGATGTGTTATTATATTTGCTCTGGACCTTGTGGTAAAGACAA 179
|||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 161 AATGTACTGGAACCCAAAGATGTGTTATTTTATTTGCTCTGGACCTTGTGGTAAAGACAA 220
Query 180 CAACTGTCTCCAACGTTGTAAGAAATGTTGTCATTGGCATTGCATGGATCCATGTTG 236
||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 221 TAACTGTCGCCAACGTTGTAAGAAATGTTGTCATTGGCGGTGCATGGGTCCATCTTG 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5