BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314925

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G42700.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   466    8e-131


> AT1G42700.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: response to cold; LOCATED IN: nucleus; BEST 
Arabidopsis thaliana protein match is: Plant transposase 
(Ptta/En/Spm family) (TAIR:AT1G40087.1); Has 10 Blast hits 
to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:16066931-16067592 FORWARD 
LENGTH=450
Length=450

 Score =  466 bits (252),  Expect = 8e-131
 Identities = 392/455 (86%), Gaps = 28/455 (6%)
 Strand=Plus/Plus

Query  1    ATGTATACCTTA-CACTCCGACGAAACACAAAATGGAGAGGAGAAC--CAAACG---AAT  54
            ||||||||| ||  |||| ||| |||| ||| ||||||||||||||   ||| |   | |
Sbjct  1    ATGTATACC-TATGACTCTGACAAAACGCAAGATGGAGAGGAGAACTTAAAATGTTCACT  59

Query  55   -GAGAAACTAGCTGAA-AAGATTACTCAAAACGCTGGAAACACTTCTGGGAGTAACAATA  112
             |||||||||||| || ||||||| ||||||||||||| |||||  ||||| ||| | ||
Sbjct  60   AGAGAAACTAGCT-AAGAAGATTATTCAAAACGCTGGAGACACTAATGGGAATAATAGTA  118

Query  113  CGCCAAATTCAAATGATGATTTCGCTCAAGTATTTGGGAGAGAACGGCCTGGTCGTGTTC  172
            | ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct  119  CCCCAAATTCAAATGATGACTTCGCTCAGGTATTTGGGAGAGAGCGGCCTGGTCGTGTTC  178

Query  173  GTTGTGTTGGACTTGGTCCCACTCCTTCGTCATTTTTTCAGAATCGCACCACGAC-ACAA  231
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct  179  GTTGTGTTGGACTTGGTCCCACTCCTTCGTCATTTATTCAGAATCGCACCACGACAAC-A  237

Query  232  TCCAGTGAGGAACAGGAAGTGATTGGCTTGAGGAATCGAGTTCGTGAGTTAGAAGATAAA  291
            |  ||| ||||||| |||||| || ||||||  |||||||||||||||||||||||||||
Sbjct  238  TTGAGTAAGGAACAAGAAGTGCTTAGCTTGAATAATCGAGTTCGTGAGTTAGAAGATAAA  297

Query  292  TTGGTGAAGATGAGTGATTTGGAAGACAAAGTGGATAAGATGAATGAAGT--TATATAT-  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| 
Sbjct  298  TTGGTGAAGATGAGTGATTTGGAAGACAAAGTGGATAAGATGAATGAAGTCATATATATA  357

Query  349  -CAACTTGCCA--G-CAACAACAATTGCACTACTTGGA-TAGT-----GGTTAGAAAGG-  397
             |||| ||||   | |||||||||||||||||| || | ||||     || ||||| || 
Sbjct  358  TCAACCTGCCGCCGGCAACAACAATTGCACTACATG-ACTAGTACTATGGATAGAA-GGA  415

Query  398  GATGGCTTCAAGTAGAAGGGGATGGCTTCAAGTAG  432
            |||||||||||||||||||  ||| ||||||||||
Sbjct  416  GATGGCTTCAAGTAGAAGGCAATGACTTCAAGTAG  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5