BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314948
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57560.1 | Symbols: AtMYB50, MYB50 | myb domain protein 50 |... 1286 0.0
> AT1G57560.1 | Symbols: AtMYB50, MYB50 | myb domain protein 50
| chr1:21316828-21318064 FORWARD LENGTH=1073
Length=1073
Score = 1286 bits (696), Expect = 0.0
Identities = 871/952 (91%), Gaps = 25/952 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAGACATTCTTGTGGTTACAAACAAAACCTGAGAAAAGGTCTCTGGTCGCCTGAA 60
|||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 24 ATGAAGAGACATTCTTGTTGTTACAAACAAAAGCTGAGAAAAGGTCTTTGGTCTCCTGAA 83
Query 61 GAAGACGAGAAGCTTCTCAATTACATCACTAAAAATGGCCATGGTTGCTGGAGTTCTGTC 120
||||| ||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 84 GAAGATGAGAAACTTCTCAATTACATTACCAAACATGGCCATGGTTGCTGGAGTTCTGTC 143
Query 121 CCTAAACTCGCCGGTCTTGAGAGATGTGGAAAGAGCTGTAGACTCAGGTGGATCAATTAC 180
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 144 CCTAAACTCGCAGGTCTCGAGAGATGTGGAAAGAGCTGTAGACTCAGATGGATCAATTAC 203
Query 181 TTAAGACCTGATTTAAAAAGAGGAGCTTTCTCTTCAGAGGAACAGAATCTCATTGTCGAG 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TTAAGACCTGATTTAAAGAGAGGAGCTTTCTCTTCAGAGGAACAGAATCTCATTGTCGAG 263
Query 241 CTTCATGCTGTTCTTGGAAACAGATGGTCACAAATTGCTGCAAGACTTCCCGGGAGAACC 300
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 264 CTTCATGCTGTTCTTGGAAACAGATGGTCGCAAATTGCTGCGAGGCTTCCCGGGAGAACC 323
Query 301 GATAACGAGATCAAGAACCTT-TGGAATTCTTGCATTAAGAAGAAGCTGATGAAGAAAGG 359
|| |||||||| |||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 324 GACAACGAGATAAAGAAC-TTGTGGAATTCGTGCATTAAGAAGAAGCTGATGAAGAAAGG 382
Query 360 CATTGACCCTATTACACATCAACCTCTCTCCGAGGTTGGTAAAGACACAAACAAAAGCGA 419
||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||
Sbjct 383 CATTGACCCTATTACACATAAACCCCTCTCCGAGGTTGGTAAAGAAACAAACAGAAGCGA 442
Query 420 CAACCACAATTCCACAAGTTTCTCCTCAAAAACTAACCAAGACTTCTTTGTCAAGCAAAC 479
||| |||||||||||||||| |||||| ||||||| |||||||| ||||||||| ||||
Sbjct 443 CAATAACAATTCCACAAGTTTTTCCTCAGAAACTAATCAAGACTTGTTTGTCAAGAAAAC 502
Query 480 GTCTGATTTTTCCAAGTATTCTGCGTTTCAGAA-GCAAGAATCCAACTCTGTTTCACTC- 537
|||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 503 GTCTGATTTTGCCGAGTATTCTGCGTTTCAGAAAG-AAGAATCCAACTCTGTTTCACTCA 561
Query 538 GACAATTCGCTCTCTTCCATGATCCCTACGCAATTCAACATCAACATCGATGGTTCTGTC 597
|| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct 562 GA-AATTCGCTCTCTTCCATGATCCCAACGCAATTCAACATCGAC---GATGGTTCTGTC 617
Query 598 TCAAAAGCGCGTTTTGAGACACAGGTATGCGTGAAACCCTCGATTATTCTTCTTCCTCCT 657
||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 618 TCAAATGCGGGTTTTGATACACAAGTATGCGTGAAACCCTCGATTATTCTTCTTCCTCCT 677
Query 658 CCAGGCAACACTTCAAGCACTAT------A--G-ATCATGTAAAAGTGACAGAGCCTAAT 708
||| |||||||||||||||| | | | |||||||||| ||| |||||||||||
Sbjct 678 CCAAACAACACTTCAAGCACTGTCTCTGGACAGGATCATGTAAACGTGTCAGAGCCTAAT 737
Query 709 TGGGAAACAAACTGTCGAACCACGAGCCACCGTGA-CAATCCCGGTTTGGAAGAAATGAA 767
|||||| ||||| || ||||||| ||||||| | | |||||||||| |||||||||||||
Sbjct 738 TGGGAATCAAACAGTGGAACCACAAGCCACC-TCAACAATCCCGGTATGGAAGAAATGAA 796
Query 768 ATGGTCCGACGAGTACCTAAACGAATCGTTATTCTCTAGCCCA-GTTTATGTTAAATCAG 826
||||||||| |||||||||||||||||||||||||||| |||| ||||| || |||||||
Sbjct 797 ATGGTCCGAGGAGTACCTAAACGAATCGTTATTCTCTA-CCCAAGTTTACGTGAAATCAG 855
Query 827 AGATGGATTTCAACTCCAACATTGCCTTTCCTTGGAGCCAAAGCCAAGCTTGTGACGTGT 886
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 856 AGACGGATTTCAACTCCAACATTGCCTTTCCTTGGAGCCAAAGCCAAGCTTGTGACGTAT 915
Query 887 TCCCCAAGGATCTTCAGAGAATGGCATTTTCTTTTGGT---CAGACCCTTTA 935
||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 916 TCCCCAAGGATCTTCAGAGAATGGCCTTCTCTTTTGGTGGTCAGACCCTTTA 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5