BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314953
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57670.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 1186 0.0
> AT1G57670.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr1:21357169-21359872 REVERSE LENGTH=1164
Length=1164
Score = 1186 bits (642), Expect = 0.0
Identities = 1005/1176 (85%), Gaps = 42/1176 (4%)
Strand=Plus/Plus
Query 10 CTATCTCGCCCCATCCATCAAGTGTTCATCAACTTCCGGGG-AA--ATCTTCGCTACGGC 66
|||||||||||| || ||||||| ||||||||||||||||| || || ||||| |||||
Sbjct 10 CTATCTCGCCCCGTCAATCAAGTTTTCATCAACTTCCGGGGAAAGGATATTCGCCACGGC 69
Query 67 TTCGTCAGTCACCTTACCGATGCTTTGAAACGACACAATATCAACTTTTTCATAGATACA 126
|| |||||||| |||| ||||| |||||| || | ||||||||||| ||||| ||||||
Sbjct 70 TTTGTCAGTCATCTTAAAGATGCCTTGAAAAGAAAAAATATCAACTTCTTCATCGATACA 129
Query 127 CATGAACAAAAGGGCAGAGACCTAAAACATCTCTTTAAACGGATCGAAGAGGCCACGGTC 186
|||||||||||||| |||||||| || || |||||||||||||| |||||||||||| ||
Sbjct 130 CATGAACAAAAGGGAAGAGACCTGAACCACCTCTTTAAACGGATTGAAGAGGCCACGATC 189
Query 187 GCACTGGTCATCTTATCCACTAGGTATGCAGAATCAAAATGGTGTTTGGATGAGCTGACG 246
|| ||||||||||||||| | ||||||| |||||||||||||||||||| || ||||||
Sbjct 190 GCGCTGGTCATCTTATCCCCAAGGTATGGGGAATCAAAATGGTGTTTGGAAGAACTGACG 249
Query 247 AAAATCATGGATCAAGCAGAGAAAATGG-AAATGATTGTCATCCCAATCTTCTACAAGGT 305
| ||||||||| |||| ||| |||| || ||||||||||||||||||||||||| || ||
Sbjct 250 ACAATCATGGACCAAGAAGA-AAAAGGGCAAATGATTGTCATCCCAATCTTCTATAAAGT 308
Query 306 GA-AACCGAAAGACGTGGAGCTACAGGA-GGGAGTGTTTGGTGATAGGTTTTGGAGTCAC 363
|| || || ||||||||||| ||| | ||||| ||| || ||| |||||||||| |
Sbjct 309 GAGAA-CGGAAGACGTGGAGAAACA-AACGGGAGAGTTCGGCCATATGTTTTGGAGTTGC 366
Query 364 GCA-GATCAATCCAGTCGCGAAGAGATGGAGAAATGGCAAGTAGCTTTGAAGGCTGTGTG 422
| | || || | |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 367 G-ATGAAGAAGCAAGTCTTGAAGAGATGGAGAAATGGCAAGTGGCTTTGAAGGCTGTGTG 425
Query 423 CAACAAGGTTGGCA-TCACGTTGTATCGCAAAAGATACGAGGCCAAGTTTATCAAGAAGG 481
|||||| |||| | |||||||| ||| ||||||| ||||||||| |||||||||||||
Sbjct 426 CAACAAAATTGG-ACTCACGTTGGATCTTAAAAGATCCGAGGCCAAATTTATCAAGAAGG 484
Query 482 -TCGTGAAGGAGGTTGAGAAAGTTTTAACCAGC-ATTCAATCTGGTGAAGGAAGAGAAAA 539
|| |||||| ||||||| |||||||||||| | |||||||||| ||||| || || ||
Sbjct 485 TTC-TGAAGGCGGTTGAGGAAGTTTTAACCA-CTATTCAATCTGATGAAGCAAAAG-AAG 541
Query 540 TC-ATTGTGTGAAGG-TG--AAAACATTTAAGGTTCCACTAG-CTTTGCCATGGTCATGG 594
| | |||||| ||| || |||||||||| |||||||| | || |||| | |||
Sbjct 542 GCAACTGTGTGGAGGATGTTGAAACATTTAACGTTCCACT-GACTCTGCC----T--TGG 594
Query 595 TCATGGTTTGGCTCAGCGGTTGGGTTGATTGGTACAGTGCTTGGCTTACTCTCTGAGTTT 654
||||||||| |||| ||||||| | | |||||| || | || ||||||||| ||||| |
Sbjct 595 TCATGGTTTAGCTCGGCGGTTGAGCTAATTGGTGCAATTCTCGGCTTACTCGCTGAGACT 654
Query 655 GTTCA--AT-ATG-AGGAAGGAAGAGAAGAC-GATTGTGTGAAGAAGGTGAAAACGTTTA 709
||||| | ||| ||||| ||||||||| | |||| ||||||||| |||||||| |||
Sbjct 655 GTTCACGCTGATGAAGGAA-GAAGAGAAG-CTGATTTTGTGAAGAAAGTGAAAACACTTA 712
Query 710 ATGTTCCACTGGCATTACCATGGTTATGGTTTAGCTCGGTGGTT-AAGCTGATTGGTGCC 768
||||||||||||| || ||||||||||||||| |||||| |||| || || ||||||||
Sbjct 713 ATGTTCCACTGGCTTTGCCATGGTTATGGTTTGGCTCGGCGGTTGAA-CTAATTGGTGCA 771
Query 769 GTGCTCGGCTTACTCATTGAGACTGTTCGATCTGATGAAGGGAGAGAAGATGATTGTGTG 828
||| |||||||||||||| || |||||| |||||||||| | | |||||||| ||| |||
Sbjct 772 GTGGTCGGCTTACTCATTAAGGCTGTTCAATCTGATGAAAGAAAAGAAGATGGTTGCGTG 831
Query 829 AAGAAAGTGAAAACATTTAATGTTCCACTAGCTCTACCATGGTTATGGTTTGGTTCGGTG 888
|||||||||||||||||||| || |||| ||||| |||||||||||||||||||||| |
Sbjct 832 AAGAAAGTGAAAACATTTAACATTGCACTGGCTCTGCCATGGTTATGGTTTGGTTCGGCG 891
Query 889 GTTGAGATGATTGGTGCAATGCTCGGCTTACTCATTGAGACTGTTCGATCTGATGAAGGA 948
|| ||| |||||||| || |||| ||| | ||||| | |||||||| |||| |||||||
Sbjct 892 GTAGAGCTGATTGGTTCAGTGCTTGGC--A-TCATTAACACTGTTCGTTCTGGTGAAGGA 948
Query 949 AGAGAAGATGATTGCGTGAAGAAAGTGAAAAAATTTAACGTTCCACTGGCTATGCCATGG 1008
|||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 949 AGAGAAGATGATTGTGTGAAGAAAGTGAAAACATTTTACGTTCCACTGGCTCTGCCATGG 1008
Query 1009 ATATGGTTTGGTTCGGCTGTTGAGCTGGTTGGTGCAGTGCTCGGCTTACTAAATGAAACT 1068
|||||||||| || || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1009 TTATGGTTTGGCTCTGCGGTTGAGCTGGTTGGTGCAGTGCTCGGCTTACTAAATGAAATT 1068
Query 1069 GTTCACAAGTGTGCCTCACCAGCCATGGTTATTCTTGCTAGTCAGGTTGGCTCTGTTGTG 1128
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1069 GTTCACAAGTGTGCCTCACCAACCATGGTTATTCTTGCTAGTCAAGTTGGCTCTGTTGTG 1128
Query 1129 GCTATTTCGAGCCGTTGGGCTGATAAGTCTGTCTGA 1164
||||||||||||||||||||||||||||||||||||
Sbjct 1129 GCTATTTCGAGCCGTTGGGCTGATAAGTCTGTCTGA 1164
Score = 335 bits (181), Expect = 6e-91
Identities = 346/423 (82%), Gaps = 21/423 (5%)
Strand=Plus/Plus
Query 521 CTGGTGAAGGAAG-AGA-AA-ATCATTGTGTGAAG---GTGAAAACATTTAAGGTTCCAC 574
||| ||||||||| ||| || | ||| ||||||| ||||||||| |||| |||||||
Sbjct 662 CTGATGAAGGAAGAAGAGAAGCTGATTTTGTGAAGAAAGTGAAAACACTTAATGTTCCAC 721
Query 575 TAGCTTTGCCATGGTCATGGTCATGGTTTGGCTCAGCGGTTGGGTTGATTGGTACAGTGC 634
| |||||||||||| | | |||||||||||| ||||||| | |||||| |||||
Sbjct 722 TGGCTTTGCCATGG---T--T-ATGGTTTGGCTCGGCGGTTGAACTAATTGGTGCAGTGG 775
Query 635 TTGGCTTACTC-TCTGAGTTTGTTCAATATGAGGAAGGAAGAGAAGACGATTGTGTGAAG 693
| ||||||||| | | || |||||||| ||| ||| ||| |||||| | ||| ||||||
Sbjct 776 TCGGCTTACTCAT-TAAGGCTGTTCAATCTGATGAAAGAAAAGAAGATGGTTGCGTGAAG 834
Query 694 AAGGTGAAAACGTTTAATGTTCCACTGGCAT-TACCATGGTTATGGTTTAGCTCGGTGGT 752
|| |||||||| ||||| || ||||||| | | ||||||||||||||| | |||| ||
Sbjct 835 AAAGTGAAAACATTTAACATTGCACTGGC-TCTGCCATGGTTATGGTTTGGTTCGGCGG- 892
Query 753 TA-AGCTGATTGGTGCCGTGCTCGGCTTACTCATTGAGACTGTTCGATCTGATGAAGGGA 811
|| ||||||||||| | ||||| ||| | ||||| | |||||||| |||| |||||| |
Sbjct 893 TAGAGCTGATTGGTTCAGTGCTTGGC--A-TCATTAACACTGTTCGTTCTGGTGAAGGAA 949
Query 812 GAGAAGATGATTGTGTGAAGAAAGTGAAAACATTTAATGTTCCACTAGCTCTACCATGGT 871
||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||
Sbjct 950 GAGAAGATGATTGTGTGAAGAAAGTGAAAACATTTTACGTTCCACTGGCTCTGCCATGGT 1009
Query 872 TATGGTTTGGTTCGGTGGTTGAGATGATTGGTGCAATGCTCGGCTTACTCATTGAGACTG 931
|||||||||| || | ||||||| || |||||||| ||||||||||||| | ||| | ||
Sbjct 1010 TATGGTTTGGCTCTGCGGTTGAGCTGGTTGGTGCAGTGCTCGGCTTACTAAATGAAATTG 1069
Query 932 TTC 934
|||
Sbjct 1070 TTC 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5