BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314966
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57770.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 2610 0.0
> AT1G57770.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr1:21395196-21398280 FORWARD LENGTH=1928
Length=1928
Score = 2610 bits (1413), Expect = 0.0
Identities = 1638/1744 (94%), Gaps = 26/1744 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGCCAATTTCTGCGGCTCGACGCTTCAGTCTCCGTTTCTCTGTAACTTTAGACGA 60
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 59 ATGGCCGCCAATTTCTGCGGCTTGACGCTTCAGTCTCCGTTTCTCTATAACTTTAGTCGC 118
Query 61 CCAACGATCAGATCTTCTTCCTTCATAC-G-----GTCTTCTTCATCAACCTCTTCCAAT 114
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 119 CCAACGATCAGATCTTCTTCCTTCATACGGTCTTCGTCTTCTTCATCAGCCTCTTCCAAT 178
Query 115 GGCAATCTTCCCATCAAAGAATCTTTCTCTGGAGAGCCTGAAGCAGATGTTGTGGTTATT 174
||||||| | | |||||| | |||||||| ||||||||||||||||||||||| |||
Sbjct 179 GGCAATC-T----T-AAAGAACCCTTCTCTGGGGAGCCTGAAGCAGATGTTGTGGTAATT 232
Query 175 GGAAGTGGCATAGGAGGATTATGTTGTGGTGCATTGTTAGCTAGGTATGATCAGGATGTG 234
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 233 GGAAGTGGGATAGGAGGATTATGTTGTGGTGCATTGTTAGCTAGATATGATCAGGATGTG 292
Query 235 GTTGTTTTGGAGAGCCATGACCATCCCGGTGGCGCGGCTCATTCATTTGAGATCAAAGGG 294
||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 293 ATTGTTTTGGAGAGTCATGACCATCCCGGTGGCGCTGCTCATTCCTTTGAGATCAAAGGG 352
Query 295 TACAAGTTTGACTCAGGTCCTTCTCTGTTTTCTGGTTTGCAATCACGAGGTCCTCAAGCC 354
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 353 TACAAGTTTGACTCAGGTCCTTCTCTGTTTTCTGGTTTACAATCGCGAGGTCCTCAAGCA 412
Query 355 AATCCACTTGCTCAAGTTCTTGATGCTTTAGGGGAATCACTTCCATGT-AGCAAATATGA 413
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 413 AATCCACTTGCTCAAGTTCTTGATGCTTTAGGGGAATCATTTCCATGTAAG-AAATATGA 471
Query 414 TTCTTGGATGGTTTATTTACCCGAAGGAGATTTCTTGTCACGTATAGGCCCTACCGATTT 473
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 472 TTCTTGGATGGTTTACTTACCCGAAGGTGATTTCTTGTCACGAATAGGCCCTACGGATTT 531
Query 474 CTTTAAGGATCTAGAGAAATATGCCGGTCCTAGCGCAGTCCAGGAGTGGGAAAAGCTTCT 533
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 532 CTTTAAGGATCTTGAGAAATATGCCGGTCCAAGCGCAGTGCAGGAGTGGGAAAAG---C- 587
Query 534 TGTGGGTGCCTATGGAGCAATACTCCCACTGTCTTCTGCTGCTATGGCGTTACCACCATT 593
| | || ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 588 --T---T--CT-TGGAGCAATACTCCCTCTGTCTTCTGCTGCTATGGCGTTACCACCATT 639
Query 594 GTCTATTCGCGGGGATCTTGGTGTTCTCTCTACGGCTGCTGCTAGATATGCTCCTTCCCT 653
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 640 GTCTATTCGCGGGGATCTTGGTGTTCTCTCCACAGCTGCTGCTAGATATGCTCCTTCGCT 699
Query 654 GATGAAATCTTTTATCAAAATGGGTCCTAAAGGAGCGTTGGGAGCCACAAAGCTTCTCCG 713
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 700 TTTAAAATCTTTTATCAAAATGGGTCCTAAAGGAGCGTTGGGAGCGACAAAACTTCTCCG 759
Query 714 CCCGTTCTCGGAGATCGTTGATTCTTTGGAGTTGAAAGATCCGTTTATACGAAACTGGAT 773
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 760 CCCGTTCTCGGAGATCGTTGATTCTTTGGAGTTAAAAGACCCGTTTATACGAAACTGGAT 819
Query 774 TGATCTTCTCGCATTTCTTCTCGCAGGGGTCAAATCTGATGGAATACTTTCAGCAGAGAT 833
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 820 TGATCTTCTCGCATTCCTGCTCGCAGGGGTCAAATCTGATGGCATACTTTCAGCAGAGAT 879
Query 834 GATCTACATGTTTGCGGAATGGTACAAGCCAGGCTGCACACTGGAGTACCCTATTGATGG 893
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 880 GATCTACATGTTTGCAGAATGGTACAAGCCAGGCTGCACATTGGAGTACCCTATTGATGG 939
Query 894 AAGCGGTGCGGTGGTTGAAGCGCTTGTCCGTGGCTTAGAGAAGTTTGGAGGACGTCTGTC 953
| |||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 940 CACCGGTGCTGTGGTTGAAGCGCTTGTCCGTGGCTTGGAGAAGTTTGGTGGACGTCTATC 999
Query 954 TCTTAATAGTCATGTTGAGAACATTGTCATCGAGGATGGTAAAGCTGTTGGAGTCAAGCT 1013
|||||| |||||||| || |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1000 TCTTAAAAGTCATGTCGAAAACATTGTTATCGAGAATGGTAAAGCTGTTGGAGTCAAGCT 1059
Query 1014 AAAGAATGGTCAATTCATTCGAGCTAGAAAAGCTGTGGTTAGCAATGCATCGATGTGGGA 1073
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AAGGAATGGTCAATTTGTTCGAGCTAGAAAAGCTGTGGTTAGCAATGCATCGATGTGGGA 1119
Query 1074 TACTTTAAAGCTCTTACCTCCAGGAGCTCTCCCAGATTCATACGTAAAAGGTGTGAACAC 1133
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1120 TACTTTAAAGCTCTTACCTCCAGGAGCTCTCCCAGAATCATATGTAAAAGGTGTGAACAC 1179
Query 1134 AACACCTCAATGTGAGTCATTCATGCATCTTCACTTGGGATTCGACGCAGAGGGAATAGC 1193
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 AACACCTCAATGTGAATCATTCATGCATCTTCACTTGGGATTCGACGCAGAGGGAATAGC 1239
Query 1194 AGATGACCTTGAGATTCATCATATCGTTGTGAATGACTGGGACCGCGGTGTGGATGCTGA 1253
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 AGATGATCTTGAGATTCATCATATCGTTGTGAATGACTGGGACCGCGGTGTGGATGCTGA 1299
Query 1254 CCAGAATGTGGTTCTGATATCAGTCCCTAGTGTTCTTAGCCCAAACCTTGCGCCACCGGG 1313
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1300 CCAGAATGTGGTTCTGATATCTGTCCCTAGTGTTCTTAGCCCAAACCTTGCACCACCGGG 1359
Query 1314 AAAACATGTTCTACACGCTTACTGTCCTGGAACTGAACCTTTCAGTCTCTGGGAAGGTCT 1373
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 1360 AAAACATGTTCTACACGCTTACTGTCCTGGAACCGAACCTTTCGGTCTGTGGGAAGGTCT 1419
Query 1374 TGACAGAAGAAGTGCGGAGTACAAGAATCTCAAATCCCAACGGTCTGAGGTGATGTGGAG 1433
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1420 TGATAGAAGAAGTGCCGAGTACAAGAATCTCAAATCCCAACGGTCCGAGGTGATGTGGAG 1479
Query 1434 AGCGGTGGAACGGGCATTAGGGCCCGGGTTTAAAAGAGAAAAGTGCGAGGTGAGTTTGAT 1493
|||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 1480 AGCGGTTGAGCGGGCATTAGGGCTAGGGTTCAAAAGAGAAAAGTGCGAGGTGAGTTTGGT 1539
Query 1494 TGGAACACCATTGACGCATCAGAGGTTTCTAAGGAGGAATAGAGGAACATATGGGCCTGC 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 TGGAACACCATTGACGCATCAGAGGTTTCTAAGGAGGAATAGAGGAACATATGGGCCTGC 1599
Query 1554 AATAGAGGCTGGTAAAGGTACTTTTCCTGGCCATTCCACTCCCATTCCGCAGCTTTTGTG 1613
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 AATAGAGGCAGGTAAAGGTACTTTTCCTGGCCATTCCACTCCCATTCCGCAGCTTTTGTG 1659
Query 1614 TTGCGGTGACTCGACCTTTCCCGGGATCGGAGTTCCTGCAGTGGCAGCTAGTGGCGCGAT 1673
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1660 TTGCGGTGACTCGACCTTTCCCGGGATCGGAGTTCCTGCAGTGGCAGCTAGCGGCGCGAT 1719
Query 1674 TGTGGCGAATTCGCTAGTTCCTGTTTCTAAGCATTCCCAGCTTCTTGATGCTATTGGCTT 1733
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1720 TGTGGCGAATTCGCTAGTTCCTGTTTCCAAGCATTCACAGCTTCTTGATGCCATTGGCTT 1779
Query 1734 ATAG 1737
|||
Sbjct 1780 GTAG 1783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893132495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5