BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314991
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23660.2 | Symbols: | Sec23/Sec24 protein transport family ... 327 2e-89
> AT3G23660.2 | Symbols: | Sec23/Sec24 protein transport family
protein | chr3:8513457-8517790 REVERSE LENGTH=2646
Length=2646
Score = 327 bits (177), Expect = 2e-89
Identities = 199/210 (95%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 1 ATGCTAGTCCGTGAGCGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCACGGCTCG 60
||| ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2228 ATGATAGTCCGGGAACGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCATGGCTCG 2287
Query 61 CAGGCAAGGTTTTTATTGGCAAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAA 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2288 CAGGCAAGGTTTTTATTGGCGAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAG 2347
Query 121 ATGTCGACAGGGTCAGATGTGATATTCACAGACGACGTTAGCCTTCAAGTCTTCTTTGAA 180
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2348 ATGTCTACAGGGTCAGATGTGATATTCACAGACGACGTGAGCCTTCAAGTCTTCTTTGAG 2407
Query 181 CATCTTCAGAAGCTGGTAGTGCAGTCTTGA 210
||||| ||||||||||| ||||||||||||
Sbjct 2408 CATCTCCAGAAGCTGGTTGTGCAGTCTTGA 2437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9406352637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5