BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314992
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64480.1 | Symbols: CBL8 | calcineurin B-like protein 8 | ch... 1026 0.0
> AT1G64480.1 | Symbols: CBL8 | calcineurin B-like protein 8 |
chr1:23948028-23949751 REVERSE LENGTH=645
Length=645
Score = 1026 bits (555), Expect = 0.0
Identities = 617/646 (96%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGCATTCGTGAAATGCTTCTCGTTGAAGCGAACAAAACATCCTCGTGGATATGAG 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1 ATGTTGGCATTCGTGAAATGCTTCTCGTTGAAGCGAGCAAAGCATCCTCGTGGATATGAG 60
Query 61 GATCCTCATGTTCTTGCATCCGAAACTCCCTTTACAGTGAATGAGATAGAGGCTTTACAT 120
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 61 GATCCTCATGTTCTTGCATCCGAAACTCCCTTCACCGTGAATGAGATTGAGGCTTTACAC 120
Query 121 GATTTATAT-AAGAAGCTAAGTACATCCATTATCGATGATGGTCTAATCCATAAGGAAGA 179
||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 121 GATTTAT-TCAAGAAGCTAAGTACATCTATTATCAATGATGGTCTAATCCATAAGGAAGA 179
Query 180 GTTTCTTCTGGCTTTGTTCAGAAACAGCAGTATGCAAAATCTGTTTGCGGACAGGGTGTT 239
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 180 GTTTCTTCTGGCTTTGTTCAGAAACGGCAGTATGCAAAATCTATTTGCGGACAGGGTGTT 239
Query 240 TTATATGTTTGATAGGAAACGCAATGGTGTGATTGAGTTTGGAGAATTTGTTCGTTCACT 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 240 TTATATGTTTGATAGGAAACGCAACGGTGTGATTGAGTTTGGAGAATTTGTTCGTTCCCT 299
Query 300 TAGCATCTTCCATCCATACACTCCCGAACATGAAAAATCTGCATTTATGTTCAAGCTTTT 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAGCATATTCCATCCATACACTCCCGAACATGAAAAATCTGCATTTATGTTCAAGCTTTT 359
Query 360 TGACCTCCATGGAACCGGGTTCATCGAGCCCCATGAG---AAGA---TGGTGGGCGCACT 413
|||||||||||||||||| |||||||||||||||||| |||| |||| ||||||||
Sbjct 360 TGACCTCCATGGAACCGGCTTCATCGAGCCCCATGAGCTGAAGAAGATGGTTGGCGCACT 419
Query 414 ACTAGGTGAAACAGACTTAGAACTCTCGGAAGAATCTATTGAAGCTATCGTGGAACAGAC 473
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACTTGGTGAAACAGACTTAGAACTCTCGGAAGAATCTATTGAAGCTATCGTGGAACAGAC 479
Query 474 AATGCTCGAGGTTGATACAAACAAAGATGGGAAGATTGATGAAGAAGAGTGGAGAGAGCT 533
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 GATGCTCGAGGTTGATACAAACAAAGATGGGAAGATTGATGAAGAAGAGTGGAAAGAGCT 539
Query 534 CGTTGCTAAGAATCCTTCAATCCTCAAGAACATGACTCTGCCTTACCTCAAGGAAGTGAC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGTTGCTAAGAATCCTTCAATCCTCAAGAACATGACTCTGCCTTACCTCAAGGAAGTGAC 599
Query 594 ATTAGCATTTCCAAGCTTTGTACTCGACTCTGAAGTAGATGACTAG 639
||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 600 TTTAGCATTTCCAAGCTTTGTACTCGACTCTGAAGTTGAAGACTAG 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5