BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315015
Length=357
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64185.1 | Symbols: | Lactoylglutathione lyase / glyoxalase... 518 2e-146
AT5G41650.1 | Symbols: | Lactoylglutathione lyase / glyoxalase... 313 9e-85
> AT1G64185.1 | Symbols: | Lactoylglutathione lyase / glyoxalase
I family protein | chr1:23824514-23825383 FORWARD LENGTH=601
Length=601
Score = 518 bits (280), Expect = 2e-146
Identities = 331/356 (93%), Gaps = 2/356 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACGGCGTCGTTTAGGTGGATCTTGCAGCTACACAGAGACGTACCAAAAGCGGCT 60
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 14 ATGGCAACGGCGTCGTTTAGGTGGATCTTGCAGCTCCACAGAGACGTACCAAAAGCGGCT 73
Query 61 CGATTCTACGAGAAAGGTCTCGATTTCTCCGTCAATGTGGTCACCTTACGTTGGGCTGAA 120
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 74 CGATTCTATGAGAAAGGTCTCGATTTCTCCGTCAATGTCGTTACCTTACGTTGGGCTGAA 133
Query 121 CTTCACTCTGGTCCTCTCAAGCTAGCTCTTATGCAATCTCCTAGCGAGCATATGCCGAGT 180
||||| || ||||| ||||||||||||||||||||| |||| ||||||||| || ||||
Sbjct 134 CTTCAGTCAGGTCCCCTCAAGCTAGCTCTTATGCAAGCTCCCAGCGAGCATGTGATGAGT 193
Query 181 GAGAAGGGATACTCTTCACTACTATCGTTCACTGTGA-CGGACATCAATACAACAATCTC 239
||||| ||||||||||| |||||||||||||||| | | ||||| ||||||||||||||
Sbjct 194 GAGAAAGGATACTCTTCGTTACTATCGTTCACTGT-AGCAGACATTAATACAACAATCTC 252
Query 240 TAAACTTATGGAATTAGGAGCAGAACTTGATGGCTCTATCAAATACGAGGTCCATGGCAA 299
||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 253 TAAACTTATGGAATTAGGAGCTGAACTCGATGGCTCTATCAAATATGAAGTCCATGGCAA 312
Query 300 GGTTGCATCTGTGAGATGTCTTGATGGTCATGTGCTCGGACTCTATGAACCTTCAT 355
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GGTTGCTTCTGTGAGATGTCTTGATGGTCATGTGCTCGGACTCTATGAACCTTCAT 368
> AT5G41650.1 | Symbols: | Lactoylglutathione lyase / glyoxalase
I family protein | chr5:16654913-16655810 FORWARD LENGTH=629
Length=629
Score = 313 bits (169), Expect = 9e-85
Identities = 279/331 (84%), Gaps = 11/331 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACGGCGTCGTTTAGGTGGA-TCTTGCAGCTACACAGAGACGTACCAAAAGCGGC 59
||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||
Sbjct 44 ATGGCGACGGCGTCGTTTAGGTGGATTC-TGCAGCTTCACAGAGACGTACCAAAAGCTGC 102
Query 60 TCGATTCTACGAGAAAGGTCTCGA-TTTCTCCGTCAATGTGGTCACCTTACGTTGGGCTG 118
||||||||| | |||||||||| ||| ||||||||||| ||||| ||||| |||||||
Sbjct 103 TCGATTCTATGCTCAAGGTCTCGACTTT-TCCGTCAATGTCGTCACTTTACGCTGGGCTG 161
Query 119 AACTTCACTCTGGTCCTCTCAAGCTAGCTCTTATGCAATCTCCTAGCGAGCATAT-GCCG 177
| || || ||||||||| ||||||||||||||||||||||||||||| | ||| | ||
Sbjct 162 AGCTCCATTCTGGTCCTATCAAGCTAGCTCTTATGCAATCTCCTAGCAATCATGTTGC-- 219
Query 178 AGTGAGAAGGGATACTCTTCACTACTATCGTTCACTGTGACGGACATCAATACAACAATC 237
||||||||||||||| || || ||||||||||| || || ||||| ||||||||| |
Sbjct 220 --TGAGAAGGGATACTCATCGCTTCTATCGTTCACAGTCACTGACATTAATACAACAGTG 277
Query 238 TCTAAACTTATGGAATTAGGAGCAGAACTT-GATGGCTCTATCAAATACGAGGTCCATGG 296
|||||||||||| |||||||| ||| || |||||| ||||||| || ||| | |||||
Sbjct 278 ACTAAACTTATGGCTTTAGGAGCTGAA-TTAGATGGCACTATCAAGTATGAGATACATGG 336
Query 297 CAAGGTTGCATCTGTGAGATGTCTTGATGGT 327
|||||||| || ||| ||| | |||||||
Sbjct 337 AAAGGTTGCGGCTATGAAATGCCCTGATGGT 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16739160417
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5