BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315017
Length=2511
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64170.1 | Symbols: ATCHX16, CHX16 | cation/H+ exchanger 16 ... 3358 0.0
> AT1G64170.1 | Symbols: ATCHX16, CHX16 | cation/H+ exchanger 16
| chr1:23815239-23818293 REVERSE LENGTH=2436
Length=2436
Score = 3358 bits (1818), Expect = 0.0
Identities = 2090/2219 (94%), Gaps = 28/2219 (1%)
Strand=Plus/Plus
Query 310 CTTCTGGGTCCGTCGGCTCTCGGTAGAATCACGTCGTACAAGAATTCAATTTTTCCGGCG 369
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 229 CTTCTTGGCCCGTCGGCTCTCGGTAGAATCACGTCGTACAAGAATTCAATTTTCCCGGCG 288
Query 370 AGAAGTCTAACGGTGCTCGACACTCTAGCAAACCTCGGCCTCCTTCTCTTCCTCTTCCTC 429
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 289 AGAAGTCTAACGGTGCTCGACACTCTAGCAAACCTCGGCCTCCTTCTCTTCCTTTTCCTC 348
Query 430 GTCGGACTCGAGATCGATCTAACATCTCTCCGCCGCACCGGTAAAAAAGCTATTTCCATC 489
|||||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||
Sbjct 349 GTCGGACTCGAGATCGATCTGACATCTCTCCGACGTACCGGCAAAAAAGCGATTTCCATC 408
Query 490 GCCGCCGCCGGAATGCTCCTCCCCTTCGGTATGGGCATCGTCACCTCCTTCGCTTTCCCT 549
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 409 GCCGCCGCCGGAATGCTTCTCCCCTTCGGTATGGGCATTGTCACCTCCTTCGCTTTCCCT 468
Query 550 GAAGCTTCTTCTTCCGGCGACAATAGCAAAGTAGTTCCGTTCATCATTTTCATGGGAGTC 609
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 469 GAAGCTTCTTCTTCTGGCGACAATAGCAAAGTACTTCCGTTCATCATTTTCATGGGAGTC 528
Query 610 GCGCTCTCGATCACTGCTTTCGGAGTTTTGGCTCGAATCCTCGCTGAATTAAAGCTTCTC 669
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 529 GCGCTCTCGATCACTGCTTTCGGAGTTTTGGCGAGAATACTCGCTGAATTAAAGCTACTC 588
Query 670 ACCACCGATCTCGGCCGTATTTCAATGTCCGCCGCCGCAATTAACGACGTCGCGGCTTGG 729
|| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 589 ACAACCGATCTCGGCCGGATTTCAATGAACGCCGCCGCAATTAACGACGTCGCGGCTTGG 648
Query 730 GTTCTCCTAGCTCTCGCTGTATCTCTCTCCGGCGATAGGAATTCTCCGCTTGTTCCTCTC 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GTTCTCCTAGCTCTCGCTGTATCTCTCTCCGGCGATAGGAATTCTCCGCTTGTTCCTCTC 708
Query 790 TGGGTTCTGTTAAGTGGAATCGCGTTTGTGATCGCGTGTTTTTTAATCGTACCGCGAATT 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGGGTTCTGTTAAGTGGAATCGCGTTTGTGATCGCGTGTTTTTTAATCGTACCGCGAATT 768
Query 850 TTCAAATTAATCGCTCGGCGTTGCCCAGAAGGCGAACCGATAGGCGAAATGTACGTTTGC 909
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 769 TTCAAATTCATCTCTCGGCGTTGCCCAGAAGGCGAACCCATAGGCGAAATGTACGTTTGC 828
Query 910 GTCGCTCTTTGCTCGGTTCTGA-TCGCGGGTTTCGCGACAGACGCGATTGGAATTCACGC 968
||||| |||||| ||||||| | |||||||||||||||||||||| ||||| ||||||||
Sbjct 829 GTCGCCCTTTGCGCGGTTCT-ACTCGCGGGTTTCGCGACAGACGCCATTGGGATTCACGC 887
Query 969 GATTTTCGGTGCGTTTGTGATGGGCGTTCTGTTTCCCAAAGGGCATTT-TGCAGACGCGA 1027
|||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||
Sbjct 888 GATTTTCGGTGCGTTTGTGATGGGCGTTTTGTTTCCCAAAGGACATTTCT-CAGACGCGA 946
Query 1028 TTGTGGAGAAGATTGAAGATCTCGTAATGGGTCTTCTTCTACCATTGTACTTCGTTATGA 1087
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 947 TTGTGGAGAAGATTGAAGATCTTGTAATGGGTCTTCTTCTACCACTGTACTTCGTTATGA 1006
Query 1088 GCGGTTTGAAAACGGATATAACTACGATTCAAGGTGTGAAATCGTGGGGACGACTCGCGC 1147
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GCGGTTTGAAAACGGATATAACTACGATTCAAGGTGTGAAATCGTGGGGACGACTCGCGT 1066
Query 1148 TGGTGATTGTTACGGCTTGTTTTGGCAAAATCGTTGGGACTGTGAGTGTTGCCTTGTTAT 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TGGTGATTGTTACGGCTTGTTTTGGCAAAATCGTTGGGACTGTGAGTGTTGCCTTGTTAT 1126
Query 1208 GCAAGGTAGGGCTTCGTGAATCGGTTGTTCTTGGGGTTTTAATGAACACAAAGGGTTTAG 1267
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GCAAGGTAAGGCTCCGTGAATCGGTTGTTCTTGGGGTTTTAATGAACACAAAGGGTTTAG 1186
Query 1268 TGGAGCTAATTGTTCTCAACATTGGCAAAGACAGAAAGGTTTTGAGCGACCAGACTTTTG 1327
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1187 TGGAGCTAATTGTTCTCAACATTGGCAAAGACAGAAAGGTTTTGAGCGATCAGACTTTTG 1246
Query 1328 CAATTATGGTTCTCATGGCGATATTCACCACATTCATCACAACTCCAATAGTGTTGGGGT 1387
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||
Sbjct 1247 CAATTATGGTTCTCATGGCGATATTCACAACATTCATCACAACGCCAATAGTCTTGGCGT 1306
Query 1388 TATACAAACCAAGCGAGACAACGCAAACGCATAGTAGCGTCAGCTACAACTACAAGAACC 1447
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1307 TATACAAACCAAGCGAGACAACACAAACACATAGTAGCGTCAGCTACAA------GAACC 1360
Query 1448 GCAAATATAGACGGAAAATTGAGAATGATGACGAAGGCGAGAAAACGCAGCAGCTTAAGG 1507
||||| ||||||| || |||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 1361 GCAAACATAGACGCAAGATTGAGAATGATGAAGAAGGCGAGAAGATGCAGCAGCTTAAGG 1420
Query 1508 TTTTGGTATGTCTTCAAAGCAGTAAAGATATTGATCCGATGATGAAGGTAATTGAAGCTA 1567
||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 1421 TTTTGGTATGTCTTCAAAGCAGTAAAGATATTGATCCCATGATGAAAATAATGGAAGCTA 1480
Query 1568 CTCGTGGAAGCAACGAAACCAAGGAAAGATTTTGCGTTTACGTTATGCATTTAACTCAAC 1627
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTCGTGGAAGCAACGAAACCAAAGAAAGATTTTGCGTTTACGTTATGCATTTAACTCAAC 1540
Query 1628 TCTCGGAGAGACCTTCTTCCATTCGAATGGTTCAAAAGGCGAGAAGAAACGGTGTGCCCT 1687
|||| |||||||||||||| ||||||||||||||||||| |||||| |||||| ||||||
Sbjct 1541 TCTCCGAGAGACCTTCTTCTATTCGAATGGTTCAAAAGGTGAGAAGCAACGGTTTGCCCT 1600
Query 1688 TTTGGAACAAGAAAAGAGAGACCTCTAGTGCGGTTACGGTCGCGTTCGAGGCCTCTAGTA 1747
||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1601 TTTGGAACAAGAAAAGAGAGAATTCTAGTGCCGTTACGGTCGCGTTCGAGGCGTCTAGTA 1660
Query 1748 AGCTAAGTAGCGTCTT-GGTGCGTTCTGTGACCGCGATTTCACCGTTGTCAACAATTCAT 1806
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 AGCTAAGTAGCGT-TTCGGTGCGTTCTGTGACCGCGATTTCACCGTTGTCAACAATTCAT 1719
Query 1807 GAGGATATATGTAACTCAGCAGATAGTAAACGCGCAACGTTTGTGATTTTGCCGTTTCAT 1866
||||||||||||| ||| || ||||||||| || || ||||||||||||||||||| |||
Sbjct 1720 GAGGATATATGTAGCTCTGCTGATAGTAAATGCACAGCGTTTGTGATTTTGCCGTTCCAT 1779
Query 1867 AAGCAATGGAGATCTCTGGA-AAGAGAATTTGAAACGGTGAGATCGGAGTATCAGGGGAT 1925
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1780 AAGCAATGGAGATCTCTGGAGAA-AGAATTTGAAACGGTGAGATCGGAGTATCAGGGGAT 1838
Query 1926 TAACAAAAGAGTTCTTGAGAACTCACCGTGTTCTGTAGGAATTTTGGTTGATCGTGGTCT 1985
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1839 TAACAAAAGAGTTCTTGAGAATTCACCGTGTTCTGTTGGAATTTTGGTTGATCGTGGTCT 1898
Query 1986 TGGCGACAACAATTC---G--AGC----A--A-CTTTTCGCTTTCCGTCAATGTTCTGTT 2033
|||||||||||||| | ||| | | |||||| ||||||||||||||||||||
Sbjct 1899 CGGCGACAACAATTCTCCGGTAGCTTCGAGCAACTTTTCACTTTCCGTCAATGTTCTGTT 1958
Query 2034 CTTTGGCGGTTGCGATGATCGTGAAGCTTTGGTTTACGGGTTACGAATGGCAGAACATCC 2093
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1959 CTTTGGCGGTTGCGATGATCGTGAAGCTTTGGTTTACGGGTTACGAATGGCTGAACATCC 2018
Query 2094 GGGCGTTAACTTGACCGTTGTGGTTATCTCTGGTCCGGAGAGATCAAGATTTGATATACT 2153
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 2019 GGGCGTTAACTTGACCGTTGTGGTTATCTCTGGTCCGGAGAGCGCAAGGTTTGATAGGCT 2078
Query 2154 TGAAGCGCAAGAAACATCACTATTTTCGGTAGACGAGCAATTCCTTGTC-GCAACCAAGA 2212
||||||||||||||||||||||| ||| |||||||||||||||||| | |||| |||||
Sbjct 2079 TGAAGCGCAAGAAACATCACTATGTTCCTTAGACGAGCAATTCCTTG-CAGCAATCAAGA 2137
Query 2213 AAAGGGCCAATGCAACAAGATTTGAAGAGAGGACGGTGGAGTCGACGGAGGAAGTGGTTG 2272
|||||||||||||| | ||||||||||||||||||||| | || ||||||||||||||||
Sbjct 2138 AAAGGGCCAATGCAGCTAGATTTGAAGAGAGGACGGTGAATTCAACGGAGGAAGTGGTTG 2197
Query 2273 AGATTATCAGCAAATTTTGCGAGTGCGATATTTTATTGGTCGGAAGATCTTCCAAAGGAA 2332
|||||||| || |||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 2198 AGATTATCCGCCAATTTTACGAGTGCGATATTTTATTGGTGGGAAAATCTTCCAAAGGAC 2257
Query 2333 CTATGGTTTCAAGATTAACGGTTATGAAGATAGAGTGTCCGGAACTTGGATCGGTCGGAA 2392
||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 2258 CTATGGTTTCAAGATTACCGGTTATGAAGATAGAGTGTCCAGAACTGGGACCGGTCGGAA 2317
Query 2393 ACTTGATCGTGTCAAATGAGATTTCTACTTCAGTGTCTGTTTTGGTGGTTCAACAGTACA 2452
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2318 ACTTGATCGTGTCAAATGAGATTTCTACTTCAGTGTCTGTTTTGGTGGTTCAACAATACA 2377
Query 2453 CCGCGAAAAGTCCTTCTGTGGTGGGTTCCGTCTCTGTCCCGGTGGTGGAGACGCCATGA 2511
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378 CCGGGAAAGGTCCTTCTGTGGTGGGTTCCGTCTCTGTCCCGGTGGTGGAGACGCCATGA 2436
Score = 390 bits (211), Expect = 3e-107
Identities = 217/220 (99%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 1 ATGGGTACTTTGGTCAACGGTACTATTCCGGCGATGAAGTGTCCCAAGAATGTGGCGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTACTTTGGTCAACGGTACTATTCCGGCGATGAAGTGTCCCAAGAATGTGGCGATG 60
Query 61 ATGAAGGCAACGTCCAACGGAGTGTTCGATGGAGAGAGTCCATTAGATTTCGCTTTTCCT 120
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGAAGACAACGTCTAACGGAGTGTTCGATGGAGAGAGTCCATTAGATTTCGCTTTTCCT 120
Query 121 CTTGTCATTCTTCAGATTTGCCTCGTCGTCGCCGTCACTCGCTCTTTGGCCTTCCTTCTC 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTGTCATTCTTCAGATTTGCCTTGTCGTCGCCGTCACTCGCTCTTTGGCCTTCCTTCTC 180
Query 181 CGTCCCATGAGACAACCACGTGTTGTCGCCGAGATCATTG 220
||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCCCATGAGACAACCACGTGTTGTCGCCGAGATCATTG 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124614686412
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5