BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315021
Length=324
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64130.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 394 3e-109
AT5G41605.1 | Symbols: | pre-tRNA | chr5:16638166-16638249 FOR... 69.4 2e-11
AT4G25640.2 | Symbols: DTX35 | detoxifying efflux carrier 35 | ... 69.4 2e-11
AT4G25635.1 | Symbols: | pre-tRNA | chr4:13076574-13076657 REV... 69.4 2e-11
AT4G11216.1 | Symbols: | pre-tRNA | chr4:6837774-6837857 REVER... 69.4 2e-11
AT1G20040.1 | Symbols: | pre-tRNA | chr1:6948860-6948943 REVER... 69.4 2e-11
AT1G64120.1 | Symbols: | pre-tRNA | chr1:23802553-23802636 FOR... 69.4 2e-11
AT5G52495.1 | Symbols: | pre-tRNA | chr5:21300880-21300963 REV... 67.6 7e-11
AT5G07625.1 | Symbols: | pre-tRNA | chr5:2411148-2411231 FORWA... 67.6 7e-11
AT5G09345.1 | Symbols: | pre-tRNA | chr5:2898867-2898950 REVER... 67.6 7e-11
AT5G25585.1 | Symbols: | pre-tRNA | chr5:8906416-8906499 FORWA... 67.6 7e-11
AT4G23635.1 | Symbols: | pre-tRNA | chr4:12320110-12320193 FOR... 67.6 7e-11
AT4G11213.1 | Symbols: | pre-tRNA | chr4:6837560-6837643 REVER... 63.9 9e-10
AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-241... 56.5 1e-07
> AT1G64130.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:23802559-23803533 FORWARD
LENGTH=348
Length=348
Score = 394 bits (213), Expect = 3e-109
Identities = 262/285 (92%), Gaps = 6/285 (2%)
Strand=Plus/Plus
Query 43 TGGCAACGACACCACATGACCATTGAGTCAGTAGATCACGAAACGAAAAGCATGAGGCAA 102
||||||||| | |||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 67 TGGCAACGAGAACACATGACCATTGAGTCAGTGGATCACGAAACGAGAAGCATGACGCAA 126
Query 103 CGGTTTACCTTCCCTGAATTCTTTGAAGGCTATAGGCTGATTACATCAACTACAAAAGTT 162
||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 127 CGGTTTACCGTACCTGAATTCTTTGAAGGCTATAAGATGATTACATCAACTACAAAAGTT 186
Query 163 AACGATT-CGCACACTGGCTTGAATAGCCTCGTCGATATCAGCGTGGAGTACGATAAGAC 221
|| |||| ||| || ||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 187 AATGATTCCGC-CATTGGCTTGTATAGCCTCGTCGATATCAGTGTGGAGTACGATAAGAC 245
Query 222 TGGCCCTGAGATCAAAGACCTTGACGAAGTCCAATTCCTTGTG-AGCTATATCAATGAGT 280
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 246 TGGCCCTGAGATCAAAGACCTTGACCAAGTCCAATTCCTTGTGGA-CTATATCAATGAGT 304
Query 281 TGGTTGCT-CGTACTGGTGGTCAGCTCCTAATACGTTTTAAGTAA 324
||||| || ||||||||||||||||||||| |||| ||||||||
Sbjct 305 TGGTT-CTTCGTACTGGTGGTCAGCTCCTACGACGTCTTAAGTAA 348
Score = 69.4 bits (37), Expect = 2e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
> AT5G41605.1 | Symbols: | pre-tRNA | chr5:16638166-16638249 FORWARD
LENGTH=84
Length=84
Score = 69.4 bits (37), Expect = 2e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 7 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT4G25640.2 | Symbols: DTX35 | detoxifying efflux carrier 35
| chr4:13076444-13079048 REVERSE LENGTH=1760
Length=1760
Score = 69.4 bits (37), Expect = 2e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 1553 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 1589
> AT4G25635.1 | Symbols: | pre-tRNA | chr4:13076574-13076657 REVERSE
LENGTH=84
Length=84
Score = 69.4 bits (37), Expect = 2e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 7 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT4G11216.1 | Symbols: | pre-tRNA | chr4:6837774-6837857 REVERSE
LENGTH=84
Length=84
Score = 69.4 bits (37), Expect = 2e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 7 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT1G20040.1 | Symbols: | pre-tRNA | chr1:6948860-6948943 REVERSE
LENGTH=84
Length=84
Score = 69.4 bits (37), Expect = 2e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 7 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT1G64120.1 | Symbols: | pre-tRNA | chr1:23802553-23802636 FORWARD
LENGTH=84
Length=84
Score = 69.4 bits (37), Expect = 2e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 7 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT5G52495.1 | Symbols: | pre-tRNA | chr5:21300880-21300963 REVERSE
LENGTH=84
Length=84
Score = 67.6 bits (36), Expect = 7e-11
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
||||||||||||||||||||||||||||||||||||
Sbjct 8 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT5G07625.1 | Symbols: | pre-tRNA | chr5:2411148-2411231 FORWARD
LENGTH=84
Length=84
Score = 67.6 bits (36), Expect = 7e-11
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
||||||||||||||||||||||||||||||||||||
Sbjct 8 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT5G09345.1 | Symbols: | pre-tRNA | chr5:2898867-2898950 REVERSE
LENGTH=84
Length=84
Score = 67.6 bits (36), Expect = 7e-11
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
||||||||||||||||||||||||||||||||||||
Sbjct 8 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT5G25585.1 | Symbols: | pre-tRNA | chr5:8906416-8906499 FORWARD
LENGTH=84
Length=84
Score = 67.6 bits (36), Expect = 7e-11
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
||||||||||||||||||||||||||||||||||||
Sbjct 8 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT4G23635.1 | Symbols: | pre-tRNA | chr4:12320110-12320193 FORWARD
LENGTH=84
Length=84
Score = 67.6 bits (36), Expect = 7e-11
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
||||||||||||||||||||||||||||||||||||
Sbjct 8 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43
> AT4G11213.1 | Symbols: | pre-tRNA | chr4:6837560-6837643 REVERSE
LENGTH=84
Length=84
Score = 63.9 bits (34), Expect = 9e-10
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
|||||||||||||||||||||||||||| ||||||||
Sbjct 7 ATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTG 43
> AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-2414711
FORWARD LENGTH=2024
Length=2024
Score = 56.5 bits (30), Expect = 1e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 2 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 31
||||||||||||||||||||||||||||||
Sbjct 164 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15080324700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5