BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315031
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50870.1 | Symbols: | F-box and associated interaction doma... 385 6e-106
AT1G47790.1 | Symbols: | F-box and associated interaction doma... 202 7e-51
> AT1G50870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:18855147-18856337 FORWARD LENGTH=1191
Length=1191
Score = 385 bits (208), Expect = 6e-106
Identities = 593/772 (77%), Gaps = 54/772 (7%)
Strand=Plus/Plus
Query 38 AAAGAAGAAGAGGACAATCTTCATCAATGTC-AAAAC--C-ATATT-CTTCATTTCCTCT 92
||||| ||| | |||||||||| || || | ||||| | | ||| | || | ||||||
Sbjct 41 AAAGACGAAAAAGACAATCTTCTTCGATACCAAAAACAACAACATTGC-TC-TGTCCTCT 98
Query 93 TGATCTAGCCTCGGAGATACTCTTAAAGCTGCCTGCAAAATCTATCGTGAGATCTCGTTG 152
||||||| || |||||||||||||| ||| |||| |||||| | |||| | ||||||
Sbjct 99 TGATCTAATCTTGGAGATACTCTTAAGGCTACCTGTTAAATCTGTTTTGAGGTTTCGTTG 158
Query 153 CATATCAAAGCTCTGGTCATCAATCACCACAGATCCATATTTCATCAAGTCATTCGAAAC 212
| || |||||||||| ||||| |||||| ||||||||||| | ||| |||| |||| |
Sbjct 159 TGTTTCGAAGCTCTGGTTATCAACCACCACCGATCCATATTTTACCAACTCATACGAAGC 218
Query 213 TCGGTCCTTGTCAAAGCCAAGTCTTCTACTATTCTTC-AAAAGAATGGACAAGTTGTGTG 271
||| |||| || ||||||||||||| | |||||| |||| || ||||||||||| ||
Sbjct 219 TCGATCCTCAACACGGCCAAGTCTTCTAATGTTCTTCAAAAACAA-GGACAAGTTGTTTG 277
Query 272 TTTTCTCATTTCCACAACACCATCAGAACTCGAACGAGCGGTATGGTAATGATTCTTCTC 331
||||| | ||||| || ||| ||||||| || | | || | | | | |||||| |
Sbjct 278 TTTTCACGTTTCCTCACCACAATCAGAATTC---C-A-AGG-A--G-ACTCATTCTTATT 328
Query 332 CTCAGCCTTTGGATATTTACCAAATGAAATGCCCTAAATATTTTTGCTTCTCATTCATGG 391
|||||| | |||||| |||||| || |||| ||||||||||| ||||||| | |||| ||
Sbjct 329 CTCAGCATGTGGATAGTTACCATATCAAATACCCTAAATATTGTTGCTTCCCCTTCACGG 388
Query 392 AATCTGTCCACGGCTTGATCTGCTTTAGAAAAT-TAGCAACACCCATAATTTGGAACCCT 450
||||||||||||| || ||| ||||| ||| || || ||| |||||||||||||||||||
Sbjct 389 AATCTGTCCACGGGTTAATCAGCTTTCGAATATCTA-CAAAACCCATAATTTGGAACCCT 447
Query 451 ACCATGAGACAGTTTTTAA-CATTGACC-AAACCCGACAAGACCTGGA-G--A--A---G 500
||||||||||||||||||| | ||| || ||||| || || | ||||| | | | |
Sbjct 448 ACCATGAGACAGTTTTTAATC-TTG-CCTAAACCGGAAAAAAGCTGGAAGGGATTATCAG 505
Query 501 TAT----AGGATACGATCCAATCGAGGGTAAACACAAAGTTGTATGCTTGCCTGGTGATA 556
| | ||||||||||||| |||| |||||||||||| | | ||| || | ||||||
Sbjct 506 TCTTTTTAGGATACGATCCAGTCGAAGGTAAACACAAACTAATGTGCATGAATCGTGATA 565
Query 557 AAATCTGG-GAAGACTGTCGGGTTTTAACATTGGGATCAGGTCAAGAACAATGGAGAAGC 615
| | | | || || ||| ||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 566 ACA-CAAGCGATGAGTGTAGGGTTTTAACACTGGGATCAGCTCAAGAAAAATGGAGAAGG 624
Query 616 ATCAAAACCAGCCTTGACCATCATCCTTATACT--GATAGTTATGGG-AGATGTATCAAT 672
||||||| | |||| | |||| | || || || | || | ||||| | ||| || ||
Sbjct 625 ATCAAAAGTAACCTTAAGCATCGTTCT-ATCCTTCGTTACT-ATGGGCA-ATGCATTAAC 681
Query 673 GGGGTTCTGTATTATAAAGCCGGTATTGAT-A-ATCTG-TC-AGGA-CAGTCACAAGCGG 727
|| ||| | ||||| ||||| ||||||| | || | | | | || || ||| |
Sbjct 682 GGTGTTATATATTACCAAGCCTATATTGATCAGATGGGGTTTATTAGCAATC-CAA-C-- 737
Query 728 TTATAATGAGTTTTGATGTCAGATCTGAAAAGTTCCATGCAATAACATTACC 779
| |||||||||||||| |||||||||||||||||| || | |||||||||||
Sbjct 738 T-ATAATGAGTTTTGAGGTCAGATCTGAAAAGTTCGATACGATAACATTACC 788
> AT1G47790.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17600004-17601173 REVERSE LENGTH=1170
Length=1170
Score = 202 bits (109), Expect = 7e-51
Identities = 437/583 (75%), Gaps = 72/583 (12%)
Strand=Plus/Plus
Query 67 TCAAAACCATA-TTCTTCATTTCCTCTTGATCTAGCCTCGGAGATACTCTTAAAGCTGCC 125
||||||||| | ||| || |||||||| ||||||||||| ||||||||||||| ||| ||
Sbjct 55 TCAAAACCA-ACTTCGTCCTTTCCTCTCGATCTAGCCTCAGAGATACTCTTAAGGCTACC 113
Query 126 TGCAAAATCTATCGTGAGATCTCGTTGCATATCAAAGCTCTGGTCATCAATCACCACAGA 185
|| ||||||| | ||||| | |||||| | |||||||| ||||||||||||| ||| ||
Sbjct 114 TGTAAAATCTGTTGTGAGGTTTCGTTGTGTGTCAAAGCTATGGTCATCAATCATCACCGA 173
Query 186 TCCATATTTCATCAAGTCATTCGAAACTCGGTCCTTGTCAA-A-GCCA-AGTCTTCTACT 242
|||||||||||||||| | | |||||||| || | | |||| | | || |||||| || |
Sbjct 174 TCCATATTTCATCAAGACGTACGAAACTCAGT-C-T-TCAACACGGCAGAGTCTTTTATT 230
Query 243 ATTCTTCAAAAGAATG-GACAAGTTGTGTGTTTTCTC-ATTTCCACAACACCATCAGAAC 300
| |||| ||| || | |||||||||| |||||| || | ||||| || | |||| |
Sbjct 231 CTGCTTC-AAACAAAGTGACAAGTTGTTTGTTTTTTCGA-TTCCA-AA-A-CATC---A- 281
Query 301 TCGAACGAGCGGTATGGTAATGATTCTTCTCCTCA-G-C-CT-TTGGAT-ATTTACCAAA 355
| |||| | | || | |||||| |||| | | || || ||| ||| ||
Sbjct 282 T--TACGA----T-T--CAA--ACTCTTCTTCTCAGGCCGCTATT-GATCGTTT-TCAGG 328
Query 356 TGAAA-TGCCCTA-AA-TATTT--TTGCTTCT-CATTCATGGAATCTGTCCACGGCTTGA 409
||||| | ||| | || |||| || | || | | | ||||||||||||||||||||
Sbjct 329 TGAAACT-CCC-ACAAGAATTTAGTTACCCCTCCCCT-ACGGAATCTGTCCACGGCTTGA 385
Query 410 TCTGCTTT-A-GAAAATTAGCAACACCCATAATTTGGAACCCTACCATGAGACAGTTTTT 467
|||||||| | | |||||||| || |||||||||||| |||||||||||| ||
Sbjct 386 TCTGCTTTCATGTG--TTAGCAACGGTTATTGTTTGGAACCCTAGCATGAGACAGTTCTT 443
Query 468 AACATTGACC-AAACCC-GACAAGACCTGGA-G-AAGTA----T------AGGATACGAT 513
||| || ||| ||||| || || | ||||| | || || | ||||||||||
Sbjct 444 AACCTT-ACCCAAACCAAGAAAA-AGCTGGAAGGAACTAACAGTCTTTTTAGGATACGAT 501
Query 514 CCAATCGAGGGTAAACACAAAGTTGTATG-CTTGCCTGGTGATAAAATCTGG-GAAGACT 571
||||| || |||||||||||||| || || || |||| || ||| || || | || || |
Sbjct 502 CCAATAGAAGGTAAACACAAAGTAGTGTGTCT-GCCTCGTAATAGAA-CTTGCGACGAGT 559
Query 572 GTCGGGTTTTAACATTGGGATCAGGTCAAGAA-CAATGGAGAA 613
||| ||||||||| |||||||||| |||| || || |||||||
Sbjct 560 GTCAGGTTTTAACGTTGGGATCAGCTCAAAAATCA-TGGAGAA 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5