BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315035
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63970.1 | Symbols: ISPF, MECPS | isoprenoid F | chr1:237386... 1103 0.0
> AT1G63970.1 | Symbols: ISPF, MECPS | isoprenoid F | chr1:23738691-23740364
REVERSE LENGTH=956
Length=956
Score = 1103 bits (597), Expect = 0.0
Identities = 663/696 (95%), Gaps = 0/696 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACTTCTTCTATTCAGCTTCTACTGTCTTCTTCTTCTTTGTTTCACTCTCAAATT 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 ATGGCTACTTCTTCTACTCAGCTTCTACTGTCTTCTTCTTCTTTGTTTCACTCTCAAATT 88
Query 61 ACCAAAACGCCGTTCCTTCTCCCGGCGACGAAGATCTACCTTCGGAGACCGAAGAAGTCT 120
||||||| ||| |||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 89 ACCAAAAAGCCATTCCTTCTCCCGGCGACGAAGATCGGCGTTTGGAGACCGAAGAAGTCT 148
Query 121 CTCTCGTTATCATGTCGTCCTTCAATCTCGGTTTTAGCGGCTTCTTCCGCCGTCGACGTC 180
|||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 149 CTCTCGTTATCATGTCGTCCTTCAGCCTCGGTTTCAGCTGCTTCTTCCGCCGTCGACGTC 208
Query 181 AATGAATCTGTGACTTCAGAGAAACCAACCAAAACGCTTCCGTTTCGAATCGGTCATGGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 AATGAATCTGTGACTTCAGAGAAACCAACCAAAACGCTTCCGTTTCGAATCGGTCATGGT 268
Query 241 TTTGATCTGCATCGGTTAGAGCCAGGGTACCCTCTGATCATCGGCGGGATTGATATTCCT 300
|| ||||| ||||| |||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 269 TTCGATCTACATCGTTTAGAGCCAGGGTATCCTCTGATCATCGGTGGGATTGTTATTCCT 328
Query 301 CATGATAGAGGCTGCGAAGCTCACTCCGATGGCGATGTGTTGCTTCATTGTGTAGTGGAT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 329 CATGATAGAGGCTGCGAAGCTCACTCCGATGGCGATGTGTTACTTCATTGTGTAGTGGAT 388
Query 361 GCAATTTTGGGAGCATTAGGGCTTCCAGATATAGGTCAGATTTTCCCTGATTCTGATCCT 420
||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 389 GCAATTTTGGGAGCACTAGGCCTTCCAGATATAGGTCAGATTTTCCCTGACTCTGATCCT 448
Query 421 AAATGGAAAGGAGCTGCTTCATCTGTCTTCATCAAAGAAGCTGTGAGACTCATGGACGAG 480
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 449 AAATGGAAAGGAGCTGCTTCTTCTGTATTCATCAAAGAAGCTGTGAGACTCATGGACGAG 508
Query 481 GCAGGATACGAGATAGGAAACCTAGACGCGACGTTGATTCTCCAGAGACCAAAGATAAGT 540
||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 509 GCAGGGTATGAGATAGGAAACCTAGACGCGACGTTGATTCTCCAGAGACCAAAAATTAGT 568
Query 541 CCACACAAAGAGACAATCCGATCCAATCTGTCCAAGCTTCTTGGAGCAGATCCTTCTGTT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CCACACAAAGAGACAATCCGATCCAATCTGTCCAAGCTTCTTGGAGCAGATCCTTCTGTA 628
Query 601 GTGAACTTAAAAGCCAAAACCCATGAGAAAGTTGATAGCCTTGGAGAAAACAGAAGCATT 660
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 629 GTGAACTTGAAAGCCAAAACACATGAGAAAGTTGATAGCCTCGGAGAAAACAGAAGCATA 688
Query 661 GCAGCTCACACTGTTATTCTACTCATGAAGAAATAG 696
|||||||||||||||||||| |||||||||||||||
Sbjct 689 GCAGCTCACACTGTTATTCTCCTCATGAAGAAATAG 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5