BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315039
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63910.1 | Symbols: AtMYB103, MYB103 | myb domain protein 10... 1447 0.0
AT3G13890.1 | Symbols: MYB26, ATMYB26, MS35 | myb domain protei... 126 4e-28
> AT1G63910.1 | Symbols: AtMYB103, MYB103 | myb domain protein
103 | chr1:23719783-23721774 REVERSE LENGTH=1447
Length=1447
Score = 1447 bits (783), Expect = 0.0
Identities = 1018/1129 (90%), Gaps = 26/1129 (2%)
Strand=Plus/Plus
Query 1 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCAGAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 150 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCGGAA 209
Query 61 GAAGATGAGAAGCTTATTAGATATATCACAACTCATGGCTATGGATGTTGGAGTGAAGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GAAGATGAGAAGCTTATTAGATATATCACAACTCATGGCTATGGATGTTGGAGTGAAGTC 269
Query 121 CCTGAAAAAGCAGGGCTTCAAAGATGTGGAAAAAGTTGTAGATTGCGATGGATAAACTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 CCTGAAAAAGCAGGGCTTCAAAGATGTGGAAAAAGTTGTAGATTGCGATGGATAAACTAT 329
Query 181 CTTCGACCTGATATCAGAAGAGGAAGGTTCTCTCCAGAAGAAGAGAAATTGATCATAAGT 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CTTCGACCTGATATCAGGAGAGGAAGGTTCTCTCCAGAAGAAGAGAAATTGATCATAAGC 389
Query 241 CTTCATGGAGTTGTGGGAAACAGGTGGGCTCATATAGCTAGTCATTTACCCGGACGAACG 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 390 CTTCATGGAGTTGTGGGAAACAGGTGGGCTCATATAGCTAGTCATTTACCGGGAAGAACA 449
Query 301 GATAACGAGATAAAAAACTATTGGAATTCATGGATTAAGAAAAAGATACGAAAACCGCAC 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GATAACGAGATTAAAAACTATTGGAATTCATGGATTAAGAAAAAGATACGAAAACCGCAC 509
Query 361 CACCATTACAATCGTCATCAACCGTCAATAACTACTGTGACAATGAACGTGGACGA-TGC 419
|| ||||||| |||||||||||||||| |||||||||||||| |||| | |||| | | |
Sbjct 510 CATCATTACAGTCGTCATCAACCGTCAGTAACTACTGTGACATTGAATGCGGAC-ACTAC 568
Query 420 ACCTATTGCCACTACCGTT-A--CCTCTACCACTA-ATCCATCCACTATTGATAACCTAC 475
| | |||||||||||| | | |||||||||| | | | ||| ||||| |||||| |||
Sbjct 569 ATCGATTGCCACTACCATCGAGGCCTCTACCACCACAAC-ATCGACTATCGATAACTTAC 627
Query 476 ATTTTGATGGTTTCA-TGGATTCTG-TAAACCAGTTAAATTTCGCCAACGATCAAGAAAC 533
||||||| ||||||| || ||||| ||| ||| ||||||||| |||| |||||||||||
Sbjct 628 ATTTTGACGGTTTCACTG-ATTCTCCTAA-CCAATTAAATTTCACCAATGATCAAGAAAC 685
Query 534 TAATATAAAGATTCAAGAAACCCTTTTCTCCCATAAACCTCCTCTCTTCATGGTGGACAC 593
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 686 TAATATAAAGATTCAAGAAACTTTTTTCTCCCATAAACCTCCTCTCTTCATGGTAGACAC 745
Query 594 AGCGCTTCCTATCCTAGAAGGAATGTTCTCTcaaaacatcatcacaaacaataacaacaa 653
| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 746 AACACTTCCTATCCTAGAAGGAATGTTCTCTGAAAACATCATCACAAACAATAACAAGAA 805
Query 654 aaacaa-caaTCATGACACGCAAAGAGGAGGAAGAGGAAACATTTGCGAACAAGCATTTC 712
|| | || | |||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 806 CAATGATCA-TGATGACACGCAAAGAGGAGGAAGAGAAAATGTTTGTGAACAAGCATTTC 864
Query 713 TAACAACTAGCACAGAAGAATGGGATATGAATCTTCCTCAACAAGAACAACGAGAACCGT 772
||||||||| ||| |||||||||||||||||||||| ||| | ||| ||| ||||
Sbjct 865 TAACAACTAACACGGAAGAATGGGATATGAATCTTCGTCA----G--CAA-GAG--CCGT 915
Query 773 TTCAAGTTCCTACAATGGCGTCCCATTTGTTCAATAACTCTACCAATTCAAATATCGAGA 832
|||||||||||||| ||||||| ||| ||||||| |||||| ||||||||||||| || |
Sbjct 916 TTCAAGTTCCTACACTGGCGTCACATGTGTTCAACAACTCTTCCAATTCAAATATTGACA 975
Query 833 CAACTATAAGTTATAATCCACCGGCGATACTAGAGGAAAATGTGGATAACATTGTCCC-A 891
| |||||||||||||| ||||||| || |||||| |||||| |||||||| |||| |
Sbjct 976 CGGTTATAAGTTATAATCTACCGGCGCTAATAGAGGGAAATGTCGATAACATCGTCCATA 1035
Query 892 ATTGAAAATAGCAATGTCCAAGATGGATATATGGCATCAAGTTTCGAATGTTTAAAGAGG 951
|| ||||| |||||||||||||||||| | ||||| || | ||||||||||||||||||
Sbjct 1036 AT-GAAAACAGCAATGTCCAAGATGGAGAAATGGCGTCCACATTCGAATGTTTAAAGAGG 1094
Query 952 CAAGACCTAAGCTATGATCAATGGGTA-GATTCACAACAATGCTCTAACTTTTTCTTCTG 1010
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 1095 CAAGAACTAAGCTATGATCAATGGG-ACGATTCACAACAATGCTCTAACTTTTTCTTTTG 1153
Query 1011 GGACAACCTTAACATAAACATGGACGGTTCATCTCTTCTTGGAAACCAAGATTCATCAAT 1070
|||||||||||| |||||| |||| |||||||||||| ||||||||||||| |||||||
Sbjct 1154 GGACAACCTTAATATAAACGTGGAAGGTTCATCTCTTGTTGGAAACCAAGACCCATCAAT 1213
Query 1071 GACCTTGGGATCATCTGCCTTATCTTCATCTTTTCCGTCTCCATTTTAA 1119
|| ||||||||||||||||||||||| ||||| || ||| | ||||||
Sbjct 1214 GAATTTGGGATCATCTGCCTTATCTTCTTCTTTCCCTTCTTCGTTTTAA 1262
> AT3G13890.1 | Symbols: MYB26, ATMYB26, MS35 | myb domain protein
26 | chr3:4576744-4578027 REVERSE LENGTH=1104
Length=1104
Score = 126 bits (68), Expect = 4e-28
Identities = 101/116 (87%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 1 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCAGAA 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAA 60
Query 61 GAAGATGAGAAGCTTATTAGA-TATATCACAACTCAT--GGCTATGGATGTTGGAG 113
||||| || ||||| || | | || |||| | |||| ||| |||||||||||||
Sbjct 61 GAAGACGAAAAGCTCATCA-ACTACATCA-AT-TCATATGGCCATGGATGTTGGAG 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5