BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315060
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63580.1 | Symbols: | Receptor-like protein kinase-related ... 1170 0.0
> AT1G63580.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:23577333-23578254 FORWARD LENGTH=822
Length=822
Score = 1170 bits (633), Expect = 0.0
Identities = 760/823 (92%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 1 ATGACAAGAACCATTGATGTTGCTCTGTTTTGCTTCTTCTTGTTCTCTCTTGGGGCCATG 60
|||||||||| |||||||||| | ||||||||||||||| | ||||||||||| ||||||
Sbjct 1 ATGACAAGAATCATTGATGTTTCCCTGTTTTGCTTCTTCCTATTCTCTCTTGGAGCCATG 60
Query 61 TCCCAACCTTCTCAAAATCTAACCGATTGCAACCAATTACCCGACACTTATCAATCAAAC 120
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 TCCCAACCTTCTCAAAATCTAACTGATTGCAACCAATTTCCCGACACTTATCAATCAAAC 120
Query 121 CGCAACACCGTCCTCTCAACTCTTCGCAACCGTTCCTCCCTCGGAAGCTATTACTTCAAT 180
||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||
Sbjct 121 CGCAACACCGTCCTCTCCACTCTTCGTAATCATTCCTCCCTCGGAAGCTATTACTTCAAT 180
Query 181 GCCACGGCCGGTCTTAGCCCAAATACAGTCTATGGCATGTTCCTATGCATAGGAAACATA 240
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 GCCACGGCCGGTCTAAGCCCAAACACAGTCTATGGCATGTTCCTGTGCATAGGAAACATA 240
Query 241 AGCAAAACATCTTGTTCAAACTGTGTCCATTCTGCGACTTTAGGAATGGATAAATCATGC 300
|||||||||||||||||||||||||||||||| || || |||| |||||||||||| ||
Sbjct 241 AGCAAAACATCTTGTTCAAACTGTGTCCATTCCGCAACGTTAGAAATGGATAAATCCTGT 300
Query 301 GATTCTCATGACACATCTTTCATGTTCTCTGACGAGTGTATGGTTCGGTACTCGGACGTT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GAATCTCATGACACATCTTTCATGTTCTCTGACGAGTGTATGGTTCGGTACTCGGATAAT 360
Query 361 TCTTTCTTCTCTCTCGTAGAGGATGCACCT-ACATCCTCTAGTTACTATCGGAATGATTC 419
|||||||| || |||||||| ||| ||||| || ||| |||||||| || |||||||||
Sbjct 361 TCTTTCTTTTCACTCGTAGAAGATTCACCTGCCA-CCTTTAGTTACTCTCAGAATGATTC 419
Query 420 TTTGAATTCTCCTCAtttttttAATAAAACACTTCCTGGAAAAATAGACAAGCTTGTCTT 479
||||| || ||| || |||| ||| ||||||||||||||||| ||||| ||||| || |
Sbjct 420 TTTGAGTTATCCGCAATTTTACAATCAAACACTTCCTGGAAAATTAGACGAGCTTATCCT 479
Query 480 CAGAGCATCCTCGTCTTCTTCGTCACCGGTTCCATATTTTGTGGAAGATCAAGAACATGT 539
|| ||| |||| |||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 CAAAGCCCCCTCATCTTTTTCGTCACCGGTTCCATATTTTGTGGAAGATAAAGAACATGT 539
Query 540 GACTCAACTGGAAGGTTCGTATGATTTAGAGGCAATGGCCCAGTGTAGTCCTGATCTTGA 599
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GACTCAAGTGGAAGGTTCGTATGATTTAGAGGCAATGGCTCAGTGTAGTCCTGATCTTGA 599
Query 600 TCCAAGTAACTGCACCGTTTGCTTGGGGCTTGTAGTCGAAAAATTCTCCGAGTGTTGCAG 659
|||||| | ||||||||| |||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 600 TCCAAGCAGCTGCACCGTGTGCTTGGGACTTGTGGTCGAAAAATTCTCCGAATGTTGCAG 659
Query 660 CCAATCTCGTTGGGCTCGGATCTACTTTCCTAAATGTCTTCTGAGGTATGACATCTCTGC 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 CCAATCTCGTTGGGCTCGGATCCACTTTCCTAAATGTCTTCTGAGGTATGACATCTCTGC 719
Query 720 TTTGCAACCAAACCTAACGAGTTTTGGCGTTACAACAAAAGGAGATGATATATTTGGGAG 779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTGCAACCAAACCTAACGAGTCTTGGCGTTACAACAAAAGGAGATGATATATTTGGGAG 779
Query 780 AACCTTTATTGCAATCATGATAGGTTTACTAATGGGTTTATGA 822
||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACGTTTATTGCAATCATGATAGGTTTACTAATGGGTTTATGA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5