BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315069
Length=2343
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63470.1 | Symbols: | AT hook motif DNA-binding family prot... 1762 0.0
AT1G63480.1 | Symbols: | AT hook motif DNA-binding family prot... 935 0.0
> AT1G63470.1 | Symbols: | AT hook motif DNA-binding family protein
| chr1:23536519-23539220 REVERSE LENGTH=1806
Length=1806
Score = 1762 bits (954), Expect = 0.0
Identities = 1100/1167 (94%), Gaps = 23/1167 (2%)
Strand=Plus/Plus
Query 1060 GGTTTTAAATGCATGGATGGGAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTTC 1119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 346 GGTTTTAAATGCATGGATGGGAGAGAAGCTATGGCATTTCCAGGCTCGCATTCTCAGTTC 405
Query 1120 TATCTTCAGAGAGGAGTTTTTACCAATCTTACACCTTCCCAGGTCGCGAGTGGGCTTCAC 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 406 TATCTTCAGAGAGGAGTTTTTACCAATCTTACACCTTCCCAGGTCGCGAGTGGTCTTCAC 465
Query 1180 GCGCCGCCGCCACCTCCGGGAATGAGGCCAATGTCAAACCCTAACATTCATCATCCTCAG 1239
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 466 GCGCCGCCGCCACCTCCGGGAATGAGGCCAATGTCAAACCCTAACATTCACCACCCTCAG 525
Query 1240 GCTAGCAATCCAGGACCTCCTTTCTCCATAGCTGAGCACAGGCATTCGGATTTTGGACAC 1299
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 526 GCTAGCAATCCAGGACCTCCTTTCTCCATGGCTGAGCACAGGCATTCTGATTTCGGACAC 585
Query 1300 AGCATTCACATGGGGATGGCTTCCTCTGCTTCTCCTGCTGCGGTGCAGCCGACTCTACAG 1359
||||||||||||||||| | ||||||||||||||||||||||| ||||| |||
Sbjct 586 AGCATTCACATGGGGAT-G--------GCTTCTCCTGCTGCGGTGCAGCCTACTCTGCAG 636
Query 1360 CTGCCGCCGCCACTGTCGGAGCAACCGATGGTTAAGAAGAAACGTGGACGGCCAAGAAAG 1419
|||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 637 CTGCCGCCTCCACCGTCGGAGCAACCGATGGTTAAGAAGAAACGTGGAAGGCCAAGAAAG 696
Query 1420 TATGCTCCTGATGGACAAGTCTCTTTAGGGCTTTCTCCAATGTCTTGTGTTAGTAAGAAG 1479
|||| ||||||||||||||| || || ||||||||||||||| ||||||||||||| |||
Sbjct 697 TATGTTCCTGATGGACAAGTTTCATTGGGGCTTTCTCCAATGCCTTGTGTTAGTAAAAAG 756
Query 1480 TCGAAGGACTCTTCTTCAATGTCTGATCCTAATGTACCTAAACGAGCCAGAGGTAGACCT 1539
|| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 757 TCTAAGGACTCTTCTTCAATGTCTGATCCTAATGCACCTAAAAGAGCCAGAGGTCGACCT 816
Query 1540 CCAGGAACCGGAAGGAAGCAACGCTTGGCTAATCTTGGTGAGATCTCAAGTGAGTGGATG 1599
|| ||||| ||||||||||||||||||||||||| | | | |||||||||||
Sbjct 817 CCCGGAACTGGAAGGAAGCAACGCTTGGCTAATC-T--T--G-------GTGAGTGGATG 864
Query 1600 AATACATCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGTGTTGGATCAGGAGAAGAC 1659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 AATACATCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGTGTTGGATCAGGAGAAGAT 924
Query 1660 ATTGTTTCGAAAGTGTTGTCATTTTCACAAAAAAGACCTCGGGCTCTTTGTATAATGTCG 1719
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 925 ATTGTTTCGAAAGTTTTGTCTTTTTCACAAAAAAGACCTCGGGCTCTTTGTATAATGTCA 984
Query 1720 GGCACTGGAACGGTTTCTTCGGTCACTCTGCGTGAACCCGCTTCCACAACCCCTTCCTTA 1779
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 985 GGCACTGGAACGGTTTCTTCAGTCACTCTGCGTGAACCCGCTTCAACAACGCCTTCCTTA 1044
Query 1780 ACATTCGAGGGACGTTTTGAGATTCTAAGTTTAGGTGGATCTTATCTGGTGAATGAAGAA 1839
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 ACATTTGAGGGACGTTTTGAGATTCTAAGTTTAGGTGGATCTTATCTGGTGAATGAAGAA 1104
Query 1840 GGTGGATCCAAAAGTCGAACAGGCGGTTTGAGTGTCTCTCTTTCTGGTCCTGAAGGTCAT 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GGTGGATCCAAAAGTCGAACAGGCGGTTTGAGTGTCTCTCTTTCTGGTCCTGAAGGTCAT 1164
Query 1900 GTTATCGGCGGTGGAATTGGAATGCTCATCGCAGCCAGCCTCGTTCAGGTGGTGGCTTGT 1959
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1165 GTTATCGGCGGTGGAATTGGAATGCTTATCGCAGCCAGCCTCGTTCAGGTGGTGGCTTGT 1224
Query 1960 AGTTTCGTGTACGGAGCAAGTGCAAAGTCTAATAATAACAATAACAAGACCATCAAACAA 2019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 AGTTTCGTGTACGGAGCAAGTGCAAAGTCTAATAATAACAATAACAAGACCATCAAACAA 1284
Query 2020 GAAATAAAACCTAAAG-AAGAGCAGAACAATAGCGAAATGGAGACCACACCGGGCACTGC 2078
|||||||||||||| | |||||| || |||||||||||||||||||||||| || | |||
Sbjct 1285 GAAATAAAACCTAA-GCAAGAGCCGACCAATAGCGAAATGGAGACCACACCTGGTAGTGC 1343
Query 2079 CCCAGAAGCTGCAGCATCGACGGGTCAGCAGACGCCACAGAACTTCCCAGCTCAGGGAAT 2138
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1344 ACCAGAAGCTGCAGCATCGACGGGTCAGCATACGCCACAGAACTTCCCAGCTCAGGGAAT 1403
Query 2139 GCGCGGATGGCCCGGTTCAGGCTCAGGCTCAGGGAGATCACTTGACTCTAGCAGGAACCC 2198
| |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1404 GAGCGGATGGCCCGTTTCAGGCTCAGGCTCAGGCAGATCACTTGACTCTAGCAGAAACCC 1463
Query 2199 ACTCACTGATATTGACTTGACTCGCGG 2225
|||||||||||||||||||||||||||
Sbjct 1464 ACTCACTGATATTGACTTGACTCGCGG 1490
Score = 1201 bits (650), Expect = 0.0
Identities = 906/1026 (88%), Gaps = 32/1026 (3%)
Strand=Plus/Plus
Query 1 ATGGACGGAAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTTCTATCTTCAAAGA 60
||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 ATGGATGGGAGAGAAGCTATGGCATTTCCAGGCTCGCATTCTCAGTTCTATCTTCAGAGA 417
Query 61 GGACCCTTTACCAATCTTGCACCTTCCCAACTCGCGAGTGGGCTTCACGCGCCGCCGCAA 120
||| |||||||||||| |||||||||| |||||||||| |||||||||||||||| |
Sbjct 418 GGAGTTTTTACCAATCTTACACCTTCCCAGGTCGCGAGTGGTCTTCACGCGCCGCCGCCA 477
Query 121 ACTCCGGGAACGAGGCCAATGTCAAACCCTAACATTCATCACCCTCAGGCTAACAATCCA 180
||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 478 CCTCCGGGAATGAGGCCAATGTCAAACCCTAACATTCACCACCCTCAGGCTAGCAATCCA 537
Query 181 GGACTTCCTTTCTCGGAT-TTTGGA-CACA-GCATTC--ACAT-GGGGATGGC-TGC-C- 231
|||| ||||||||| || | || |||| |||||| | | || | || | | |
Sbjct 538 GGACCTCCTTTCTC-CATGGCT-GAGCACAGGCATTCTGATTTCGGACACAGCATTCACA 595
Query 232 T---G-T-GCTTCTCCTGCTGCGGTGCAGCCGACTCTGCAGCCGCCACCACCGCCCCCAC 286
| | | ||||||||||||||||||||||| |||||||||| | ||||| ||||
Sbjct 596 TGGGGATGGCTTCTCCTGCTGCGGTGCAGCCTACTCTGCAGCTG------CCGCCTCCAC 649
Query 287 CACCGGAGCAACCGATGGTTAAGAAGAAACGTGGACGGCCAAGAAAGTATGTTGCTGATG 346
| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 650 CGTCGGAGCAACCGATGGTTAAGAAGAAACGTGGAAGGCCAAGAAAGTATGTTCCTGATG 709
Query 347 GACAAGTCTC-TCTAGGGCTTTCTCCAGTGCCTTGTGTTAGTAATAAGTCTAAGGACTCT 405
||||||| || | | |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 710 GACAAGTTTCAT-TGGGGCTTTCTCCAATGCCTTGTGTTAGTAAAAAGTCTAAGGACTCT 768
Query 406 TCTTCAATGTCTGATCCTAATGCACCTAAACGAGCCAGAGGTCGACCTCCTGGAACTGGA 465
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 769 TCTTCAATGTCTGATCCTAATGCACCTAAAAGAGCCAGAGGTCGACCTCCCGGAACTGGA 828
Query 466 AGGAAGCAACGCTTGGCTAATCTTGGTGAGTGGATGAATACTTCAGCTGGACTTGCTTTT 525
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 AGGAAGCAACGCTTGGCTAATCTTGGTGAGTGGATGAATACATCAGCTGGACTTGCTTTT 888
Query 526 GCACCTCATGTGATCAGCGTTGGAGCAGGAGAAGACATTGTTTCGAAAGTTTTGTCATTT 585
||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||
Sbjct 889 GCACCTCATGTGATCAGTGTTGGATCAGGAGAAGATATTGTTTCGAAAGTTTTGTCTTTT 948
Query 586 TCGCAACAAAGACCTCGGGCTCTTTGTATAATGTCAGGCACTGGAACAATTTCTTCAGCC 645
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 949 TCACAAAAAAGACCTCGGGCTCTTTGTATAATGTCAGGCACTGGAACGGTTTCTTCAGTC 1008
Query 646 ACTCTGTGCGAACCTGCTTCAACAGCACCTAGCATAACATTCGAGGGACGTTATGAGATT 705
|||||| | ||||| ||||||||| | ||| | ||||||| |||||||||| |||||||
Sbjct 1009 ACTCTGCGTGAACCCGCTTCAACAACGCCTTCCTTAACATTTGAGGGACGTTTTGAGATT 1068
Query 706 CTAAGTTTTGGTGGATCTTATTTGGTGAATGAAGAAGGTGGATCCAGAAGTCGAACAGGC 765
|||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1069 CTAAGTTTAGGTGGATCTTATCTGGTGAATGAAGAAGGTGGATCCAAAAGTCGAACAGGC 1128
Query 766 GGATTGAGTGTCTCTCTTTCTGGTTCC-GATGGTCGTATTATTGCCGGTGGAGTTGGCAT 824
|| ||||||||||||||||||||| || || |||| | |||| | ||||||| |||| ||
Sbjct 1129 GGTTTGAGTGTCTCTCTTTCTGGT-CCTGAAGGTCATGTTATCGGCGGTGGAATTGGAAT 1187
Query 825 GCTTATCGCAGCCAGCCTTGTTCAGGTGGTGGCATGTAGTTTTGTATACGGAGCAAGTGC 884
|||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct 1188 GCTTATCGCAGCCAGCCTCGTTCAGGTGGTGGCTTGTAGTTTCGTGTACGGAGCAAGTGC 1247
Query 885 AAAGTCTCATAATAACAATTACAAAACCATCAGACAAGAAA-AGGAACCAAAAG-AAGAG 942
||||||| ||||||||||| |||| ||||||| |||||||| | |||| || | |||||
Sbjct 1248 AAAGTCTAATAATAACAATAACAAGACCATCAAACAAGAAATAA-AACCTAA-GCAAGAG 1305
Query 943 GACAAC-AATAGCGAAATGGAGACCACACCCGGTAGTGCACCAGAACCAGCAGCATCGGC 1001
| || ||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct 1306 C-CGACCAATAGCGAAATGGAGACCACACCTGGTAGTGCACCAGAAGCTGCAGCATCGAC 1364
Query 1002 GGCTCA 1007
|| |||
Sbjct 1365 GGGTCA 1370
Score = 113 bits (61), Expect = 7e-24
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 2225 GCAGCAGCATACATTATGTGAGTGCTGTACATATCTTTGTTGTTGTAGATTTATTTCTGG 2284
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1567 GCAGCAGCATACATTATGTGAGTGCTGTACATATCTTTGTTGTTGTAGATTTCTCTCTGG 1626
Query 2285 GAATGTT 2291
|||||||
Sbjct 1627 GAATGTT 1633
Score = 91.6 bits (49), Expect = 3e-17
Identities = 56/59 (95%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 1003 GCTCACAGCTCAAAA-AACCCGACTTTGATTACTGGGTATATAAAAACCGCCATTGTTG 1060
|||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 169 GCTCACAGCTGAAAATAACCCGACTTTGATTACTGGGTATATAAAAGCCGCCATTGTTG 227
> AT1G63480.1 | Symbols: | AT hook motif DNA-binding family protein
| chr1:23539557-23542137 REVERSE LENGTH=1853
Length=1853
Score = 935 bits (506), Expect = 0.0
Identities = 591/632 (94%), Gaps = 5/632 (1%)
Strand=Plus/Plus
Query 382 GTTAGTAATAAGTCTAAGGACTCTTCTTCAATGTCTGATCCTAATGCACCTAAACGAGCC 441
|||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 789 GTTAGTAATAAGTCTAGGGACTCTTCTCCAATGTCTGATCCTAATGAACCTAAACGGGCC 848
Query 442 AGAGGTCGACCTCCTGGAACTGGAAGGAAGCAACGCTTGGCTAATCTTGGTGAGTGGATG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AGAGGTCGACCTCCTGGAACTGGAAGGAAGCAACGCTTGGCTAATCTTGGTGAGTGGATG 908
Query 502 AATACTTCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGCGTTGGAGCAGGAGAAGAC 561
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 909 AATACTTCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGCATTGGAGCAGGAGAAGAC 968
Query 562 ATTGTTTCGAAAGTTTTGTCATTTTCGCAACAAAGACCTCGGGCTCTTTGTATAATGTCA 621
|||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 969 ATTGCTGCGAAAGTTTTGTCATTTTCACAACAAAGACCTCGGGCTCTTTGTATAATGTCA 1028
Query 622 GGCACTGGAACAATTTCTTCAGCCACTCTGTGCGAACCTGCTTCAACAGCACC-T-AGCA 679
||||||||||| |||||||||| |||||||||| |||| | |||||| | | | | | |
Sbjct 1029 GGCACTGGAACCATTTCTTCAGTCACTCTGTGCAAACCCGGTTCAACCG-ATCGTCA-CT 1086
Query 680 TAACATTCGAGGGACGTTATGAGATTCTAAGTTTTGGTGGATCTTATTTGGTGAATGAAG 739
|||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1087 TAACATACGAGGGACCTTTTGAGATTATAAGTTTTGGTGGATCTTATTTGGTGAATGAAG 1146
Query 740 AAGGTGGATCCAGAAGTCGAACAGGCGGATTGAGTGTCTCTCTTTCTGGTTCCGATGGTC 799
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1147 AAGGTGGATCCAGAAGTCGAACAGGCGGATTGAGTGTCTCTCTTTCTCGTCCCGATGGTA 1206
Query 800 GTATTATTGCCGGTGGAGTTGGCATGCTTATCGCAGCCAGCCTTGTTCAGGTGGTGGCAT 859
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1207 GTATTATTGCCGGTGGAGTTGACATGCTTATCGCAGCCAACCTTGTTCAGGTGGTGGCAT 1266
Query 860 GTAGTTTTGTATACGGAGCAAGTGCAAAGTCTCATAATAACAATTACAAAACCATCAGAC 919
|||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||
Sbjct 1267 GTAGTTTTGTATACGGAGCAAGGGCAAAGACTCATAATAACAATAACAAGACCATCAGAC 1326
Query 920 AAGAAAAGGAACCAAAAGAAGAGGACAACAATAGCGAAATGGAGACCACACCCGGTAGTG 979
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1327 AAGAAAAGGAACCAAATGAAGAGGACAACAATAGTGAAATGGAGACCACACCGGGTAGTG 1386
Query 980 CACCAGAACCAGCAGCATCGGCGGCTCA-CAG 1010
|| | |||||||||||||| |||| ||| |||
Sbjct 1387 CAGCTGAACCAGCAGCATCTGCGGGTCAGCAG 1418
Score = 802 bits (434), Expect = 0.0
Identities = 658/763 (86%), Gaps = 28/763 (4%)
Strand=Plus/Plus
Query 1468 GTTAGTAAGAAGTCGAAGGACTCTTCTTCAATGTCTGATCCTAATGTACCTAAACGAGCC 1527
|||||||| ||||| | |||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 789 GTTAGTAATAAGTCTAGGGACTCTTCTCCAATGTCTGATCCTAATGAACCTAAACGGGCC 848
Query 1528 AGAGGTAGACCTCCAGGAACCGGAAGGAAGCAACGCTTGGCTAATCTTGGTGAGATCTCA 1587
|||||| ||||||| ||||| ||||||||||||||||||||||||| | | |
Sbjct 849 AGAGGTCGACCTCCTGGAACTGGAAGGAAGCAACGCTTGGCTAATC-T--T--G------ 897
Query 1588 AGTGAGTGGATGAATACATCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGTGTTGGA 1647
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 -GTGAGTGGATGAATACTTCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGCATTGGA 956
Query 1648 TCAGGAGAAGACATTGTTTCGAAAGTGTTGTCATTTTCACAAAAAAGACCTCGGGCTCTT 1707
||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||
Sbjct 957 GCAGGAGAAGACATTGCTGCGAAAGTTTTGTCATTTTCACAACAAAGACCTCGGGCTCTT 1016
Query 1708 TGTATAATGTCGGGCACTGGAACGGTTTCTTCGGTCACTCTGCGTGAACCCGCTTCCACA 1767
||||||||||| ||||||||||| ||||||| ||||||||| | |||||| ||| ||
Sbjct 1017 TGTATAATGTCAGGCACTGGAACCATTTCTTCAGTCACTCTGTGCAAACCCGGTTCAACC 1076
Query 1768 -ACCCCTTC-CTTAACATTCGAGGGACGTTTTGAGATTCTAAGTTTAGGTGGATCTTATC 1825
| | | | |||||||| |||||||| |||||||||| ||||||| ||||||||||||
Sbjct 1077 GATCG-T-CACTTAACATACGAGGGACCTTTTGAGATTATAAGTTTTGGTGGATCTTATT 1134
Query 1826 TGGTGAATGAAGAAGGTGGATCCAAAAGTCGAACAGGCGGTTTGAGTGTCTCTCTTTCTG 1885
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1135 TGGTGAATGAAGAAGGTGGATCCAGAAGTCGAACAGGCGGATTGAGTGTCTCTCTTTCTC 1194
Query 1886 GTCCTGAAGGTCA-TGTTATCGGCGGTGGAATTGGA-ATGCTCATCGCAGCCAGCCTCGT 1943
|||| || ||| | | |||| | ||||||| ||| | ||||| |||||||||| ||| ||
Sbjct 1195 GTCCCGATGGT-AGTATTATTGCCGGTGGAGTTG-ACATGCTTATCGCAGCCAACCTTGT 1252
Query 1944 TCAGGTGGTGGCTTGTAGTTTCGTGTACGGAGCAAGTGCAAAGTCTAATAATAACAATAA 2003
|||||||||||| |||||||| || ||||||||||| |||||| || |||||||||||||
Sbjct 1253 TCAGGTGGTGGCATGTAGTTTTGTATACGGAGCAAGGGCAAAGACTCATAATAACAATAA 1312
Query 2004 CAAGACCATCAAACAAGAAATAA-AACCTAAA-GAAGAGCAGAACAATAGCGAAATGGAG 2061
||||||||||| |||||||| | |||| ||| |||||| | |||||||| |||||||||
Sbjct 1313 CAAGACCATCAGACAAGAAA-AGGAACC-AAATGAAGAGGACAACAATAGTGAAATGGAG 1370
Query 2062 ACCACACCGGGCACTGCCCCAGAAGCTGCAGCATC-GACGGGTCAGCAGACGCCACAGAA 2120
||||||||||| | ||| | ||| | |||||||| | ||||||||||||||||||||||
Sbjct 1371 ACCACACCGGGTAGTGCAGCTGAACCAGCAGCATCTG-CGGGTCAGCAGACGCCACAGAA 1429
Query 2121 CTTCCCAGCTCAGGGAATGCGCGGATGGCCCGGTTCAGGCTCAGGCTCAGGGAGATCACT 2180
|||| | |||||||||| | || ||||||||||||||||||||||| || ||||||||
Sbjct 1430 CTTCTCTTCTCAGGGAATAAGGGGGTGGCCCGGTTCAGGCTCAGGCTCTGGCAGATCACT 1489
Query 2181 TGAC-TCTAGCAGGAACCCACTCACTGATATTGACTTGACTCG 2222
|||| | | |||| ||||||||||||||| |||| ||||||||
Sbjct 1490 TGACATTT-GCAGAAACCCACTCACTGATTTTGATTTGACTCG 1531
Score = 396 bits (214), Expect = 6e-109
Identities = 301/340 (89%), Gaps = 18/340 (5%)
Strand=Plus/Plus
Query 1 ATGGACGGAAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTTCTATCTTCAAAGA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 453 ATGGACGGAAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTACTATCTTCAAAGA 512
Query 61 GGACCCTTTACCAATCTTGCACCTTCCCAACTCGCGAGTGGGCTTCACGCGCCGCCGCAA 120
||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 513 GGAGCCTTTACTAATCTCGCACCTTCCCAAGTCGCGAGTGGGCTTCACGCGCCGCCGCCA 572
Query 121 -ACTCCGGGAACGAGGCCAATGTCAAACCCTAACATTCATCACCCTCAGGCTAACAATCC 179
| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 573 CA-TACGGGATTGAGGCCAATGTCTAACCCTAACATTCATCACCCTCAGGCTAACAATCC 631
Query 180 AGGACTTCCTTTCTCGGATTTTGGACACAGCATTCACATGGG-GATGG-CTGCCTGTGCT 237
||||| ||||||||||||||||||||||| |||||||||||| | ||| || ||| ||||
Sbjct 632 AGGACCTCCTTTCTCGGATTTTGGACACACCATTCACATGGGAG-TGGTCT-CCTCTGCT 689
Query 238 TCTCCTGCTGCGGTGCAGCCGACTCTGCAGCCGCCACCACCGCCCCCACCACCGGAGCAA 297
||| ||||| ||||| ||| | | | |||||||| ||| |||||| | || ||
Sbjct 690 TCTGATGCTGATGTGCAACCG-C-C---A-CCGCCACC---GCCACCACCA--G-AGGAA 737
Query 298 CCGATGGTTAAGAAGAAACGTGGACGGCCAAGAAAGTATG 337
||||||||||||| ||||||||||||||||||||||||||
Sbjct 738 CCGATGGTTAAGAGGAAACGTGGACGGCCAAGAAAGTATG 777
Score = 307 bits (166), Expect = 3e-82
Identities = 304/365 (83%), Gaps = 31/365 (8%)
Strand=Plus/Plus
Query 1061 GTTTTAAATGCATGGATGGGAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTTCT 1120
||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 442 GTTTTTAATGCATGGACGGAAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTACT 501
Query 1121 ATCTTCAGAGAGGAGTTTTTACCAATCTTACACCTTCCCAGGTCGCGAGTGGGCTTCACG 1180
||||||| ||||||| ||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 502 ATCTTCAAAGAGGAGCCTTTACTAATCTCGCACCTTCCCAAGTCGCGAGTGGGCTTCACG 561
Query 1181 CGCCGCCGCCACCTCCGGGAATGAGGCCAATGTCAAACCCTAACATTCATCATCCTCAGG 1240
|||||||||||| | ||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 562 CGCCGCCGCCACATACGGGATTGAGGCCAATGTCTAACCCTAACATTCATCACCCTCAGG 621
Query 1241 CTAGCAATCCAGGACCTCCTTTCTCCATAGCTGAGCACAGGCATTCGGATTTTGGACACA 1300
||| ||||||||||||||||||||| | || || || |||||||
Sbjct 622 CTAACAATCCAGGACCTCCTTTCTC----G--GA---------TT----TT--GGACACA 660
Query 1301 GCATTCACATGGG-GATGG-CTTCCTCTGCTTCTCCTGCTGCGGTGCAGCCGACTCTACA 1358
|||||||||||| | ||| || ||||||||||| ||||| ||||| ||| | | ||
Sbjct 661 CCATTCACATGGGAG-TGGTCT-CCTCTGCTTCTGATGCTGATGTGCAACCG-C-C-ACC 715
Query 1359 GCTGCCGCCGCCACTGTCGGAGCAACCGATGGTTAAGAAGAAACGTGGACGGCCAAGAAA 1418
|| ||||| |||| | ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 716 GCCACCGCCACCAC---CAGAGGAACCGATGGTTAAGAGGAAACGTGGACGGCCAAGAAA 772
Query 1419 GTATG 1423
|||||
Sbjct 773 GTATG 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116314662765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5