BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315080
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26110.1 | Symbols: | Protein kinase superfamily protein | ... 1048 0.0
AT1G08120.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 641 0.0
> AT5G26110.1 | Symbols: | Protein kinase superfamily protein
| chr5:9117907-9119826 REVERSE LENGTH=1261
Length=1261
Score = 1048 bits (567), Expect = 0.0
Identities = 644/682 (94%), Gaps = 2/682 (0%)
Strand=Plus/Plus
Query 1 ATGGATTGTGAGGAAAACGTT-GGGAATGAATCGCTCGTTCTGATAAAACAAGGAGCGGA 59
||||||||||||||||||||| ||| ||||||| |||||| |||| ||||||||||| ||
Sbjct 249 ATGGATTGTGAGGAAAACGTTAGGG-ATGAATCACTCGTTTTGATTAAACAAGGAGCAGA 307
Query 60 AGCTAGGGTGTTTGAGTCTACATTTGCTGGAAGAAGATCCATTGTGAAAGAACGATTCTC 119
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 308 AGCTAGGGTGTTCGAGTCTACATTTGCTGGAAGAAGATCCATCGTGAAAGAACGTTTCTC 367
Query 120 GAAGAAATATAGACACCCGATTTTGGATGCGAAACTCACACTCAAACGCTTGAATGCGGA 179
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 368 GAAGAAATATAGACATCCGATTTTGGATGCAAAACTCACACTTAAACGCTTGAATGCGGA 427
Query 180 GGCTAGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAATCCTCTATGCTGT 239
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 428 AGCTAGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAGTCCTATATGCTGT 487
Query 240 GGATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACAT 299
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 488 GGATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGGGTCTCTGTTAAGGATAT 547
Query 300 TTTCCTTGACTTTGGGGCCAATGGGATTATTGAGGAACGGTTAGATGATGTTGCTGCTCA 359
||||||||| |||||| |||||||| || |||||||||| ||||||||||||||||||||
Sbjct 548 TTTCCTTGAGTTTGGGACCAATGGGGTTGTTGAGGAACGTTTAGATGATGTTGCTGCTCA 607
Query 360 GATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCCTGGCTCACGGTGATTTGACTAC 419
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 608 GATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCTTGGCTCATGGTGATTTGACCAC 667
Query 420 ATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATCGATTTTGGCTTGAG 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 668 ATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATTGATTTTGGCTTGAG 727
Query 480 TGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTGCTTGAAAGAGCCTT 539
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 728 CGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTT 787
Query 540 ACTCTCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATATTGACAGCGTATAGGAA 599
||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 788 ACTCTCAATGCATTCGTCATGCGGGAATGTGATGGATCGTATACTGACGGCGTATAGGAA 847
Query 600 GTCCTCGAAGCAATGGTCAGCCACGTTTAACAAGCTCGCGCAAGTGAGGCAACGAGGTAG 659
|||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 848 GTCCTCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAGTGAGACAGCGAGGGAG 907
Query 660 AAAACGGACTATGATTGGATGA 681
||| ||||||||||||||||||
Sbjct 908 AAAGCGGACTATGATTGGATGA 929
> AT1G08120.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Protein kinase superfamily protein (TAIR:AT5G26110.1);
Has 235 Blast hits to 235 proteins in 96 species: Archae
- 21; Bacteria - 0; Metazoa - 117; Fungi - 8; Plants - 47;
Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | chr1:2538615-2539661
FORWARD LENGTH=1047
Length=1047
Score = 641 bits (347), Expect = 0.0
Identities = 475/531 (89%), Gaps = 32/531 (6%)
Strand=Plus/Plus
Query 1 ATGGATTGTGAGGAAAACGTTGGGAATGAATCGCTCGTTCTGATAAAACAAGGAGCGGAA 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 76 ATGGATTGTGAGGAAAACGTTGGGAATGAATCGCTAGTTCTGATAAAACAAGGAGCAGAA 135
Query 61 GCTAGGGTGTTTGAGTCTACATTTGCTGGAAGAAGATCCATTGTGAAAGAACGATTCTCG 120
|||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 136 GCTAGGGTATTGGAGTCTACATTTTCTGGAAGAAGATCCATTGTGAAAGAACGTTTCTCG 195
Query 121 AAGAAATATAGACACCCGATTTTGGATGCGAAACTCACACTCAAACGCTTGAATGCGGAG 180
||||||||| | ||||||||||||||||| |||||||||||| | || |
Sbjct 196 AAGAAATATCGCCACCCGATTTTGGATGCCAAACTCACACTC--A------AA--C---- 241
Query 181 GCTAGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAATCCTCTATGCTGTG 240
||| ||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 242 GCT---TGTATGACAAAGGCAAGAAAGCTAGGGGTTTGTACTCCAGTCATCTATGCTGTG 298
Query 241 GATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACATT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACATT 358
Query 301 TTCCTTGACTTT-GGGGCCAATGGGATTATTGAGGAACGGTTAGATGATGTTGCTGCTCA 359
||||||||||| ||||| |||||| || |||||||||||||||||||||||||| ||||
Sbjct 359 CTCCTTGACTTTTGGGGCGAATGGGGTTGTTGAGGAACGGTTAGATGATGTTGCTACTCA 418
Query 360 GATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCCTGGCTCACGGTGATTTGACTAC 419
||||||| | || || ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 419 GATTGGGACGGCCATCGCTAAGCTCCATGATGGTGGCTTGGCTCACGGTGATTTGACCAC 478
Query 420 ATCAAATATGTTAGTCAGAAGTGGAACAAATCAG-CTG---------G-T---ACTAATC 465
|||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct 479 ATCAAATATGTTAGTCAGAAGTGGAACAAATCAGGCTGATTTAATCAGCTGGTACTAATC 538
Query 466 GATTTTGGCTTGAGTGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGAT 516
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 GATTTTGGCTTGAGTGTCACATCGACCTTGCCTGAAGACAGAGCTGTTGAT 589
Score = 230 bits (124), Expect = 2e-59
Identities = 178/202 (88%), Gaps = 11/202 (5%)
Strand=Plus/Plus
Query 490 ACCTTGCCTGAAGACAAAGCTGTTGAT-T---TATAT---GTGCTTG-A-A-AGAGC-CT 538
||||||||||||||||||||||||||| | ||||| ||| || | | | ||| |
Sbjct 600 ACCTTGCCTGAAGACAAAGCTGTTGATCTAAATATATACCTTGCCTGAAGACAAAGCTGT 659
Query 539 TACTCTCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATATTGACAGCGTATAGGA 598
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 TACTCTCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATACTGACAGCGTATAGGA 719
Query 599 AGTCCTCGAAGCAATGGTCAGCCACGTTTAACAAGCTCGCGCAAGTGAGGCAACGAGGTA 658
| ||||| ||||||||||| ||||| |||||||||||||| |||||| |||||||||| |
Sbjct 720 ACTCCTCAAAGCAATGGTCCGCCACATTTAACAAGCTCGCCCAAGTGCGGCAACGAGGGA 779
Query 659 GAAAACGGACTATGATTGGATG 680
|||| |||||||||||||||||
Sbjct 780 GAAAGCGGACTATGATTGGATG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5