BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315081
Length=2382
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 2846 0.0
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 2207 0.0
> AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463069-23466451 REVERSE LENGTH=2612
Length=2612
Score = 2846 bits (1541), Expect = 0.0
Identities = 1872/2028 (92%), Gaps = 38/2028 (2%)
Strand=Plus/Plus
Query 1 ATGTACTCGTTAATTCTCCGGGAACGATCTGGATCCTTCACAGGGTCCTTATGGAGCCAA 60
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |
Sbjct 1 ATGTACTCGTTAATTCTCCGGGAAAGATCTGGATCCATCACAGGGTCCTTATGGAACCGA 60
Query 61 ATCTTCTCTCGGAACATGGGTGGTGGTCCGAGAACTTTCCCTGGAGGGCTGAACAAGTGG 120
|| | |||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 61 ATATCCTCTCGGAACATGGGTGGTGGTCCGAGAACCTTCCCTGGAGGACTAAACAAGTGG 120
Query 121 CAATGGAAACGTATGCACGAGAAGAAAGCTAGAGAGAAAGAGAACAAGCTCTTGGATCAA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGTGGAAACGTATGCACGAGAAGAAAGCTAGAGAGAAAGAGAACAAGCTCTTGGATCAA 180
Query 181 GAGAAACAGCTTTACGAAGCTCGAATTAGGACCGAGATCCGAGCTAAAATGTGGGGAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAAACAGCTTTACGAAGCTCGAATTAGGACCGAGATCCGAGCTAAAATGTGGGGAAAT 240
Query 241 CCAGATTCCGGCGAGAAAACGGCGAAATCGAAGCAGAGTCACGGACCAATGAGCCCGAAA 300
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CCAGATTCTGGTGAGAAAACGGCGAAATCGAAGCAGAGTCATGGACCAATGAGCCCGAAA 300
Query 301 GAACATATCAAAACTTTGGCTGATCGGTTTATGAAAGCTGGAGCAGAGGATTTGTGGAAC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GAACATATCAAAACCTTGGCTGATCGGTTTATGAAAGCTGGAGCAGAGGATTTTTGGAAC 360
Query 361 GAGAACGATGGGCCGGTGAAGGAATCAGATGATGGGTCGGGATTAACTCGTAGGGATAAT 420
||||||||||| ||||||||| |||||||| | ||||| || | || | || | |
Sbjct 361 GAGAACGATGGTCCGGTGAAGAAATCAGATCAAGGGTC--GA--GA-TC--A-GG-T--T 409
Query 421 GGACGGTCAGGTTCGAATTCGATTGTTTCTTCTTCTAATTCGTCTATTGATGTGAGGAAG 480
||| | |||| ||| || |||| ||||||||||| |||||||||||||| ||
Sbjct 410 ---CGG--A--TTCG-ATT-GA----TTCTACTTCTAATTCGCCTATTGATGTGAGG-AG 455
Query 481 -TTAGTTAGTGGGACATGTTATTCAATGGGTAATAGTCGGGTTTTCGATCGTAGTAGGAG 539
|||||| || ||||||| |||| |||||||| | ||| ||||||| | ||||||||||
Sbjct 456 ATTAGTTTCTGCGACATGTGATTCTATGGGTAAAAATCGTGTTTTCGGTAGTAGTAGGAG 515
Query 540 AGGTTTTTCGAGTATGAGTAGAGGTAGATTTAAGAGAAATGAGAGTTCTTGTGATGAAGG 599
|||||||||||| | | | || |||||||||||||||||||||||||||||||||||||
Sbjct 516 AGGTTTTTCGAG--T-A-T-GA-GTAGATTTAAGAGAAATGAGAGTTCTTGTGATGAAGG 569
Query 600 AGATGACTTTGATGCTAAAAAGTTAGATACTTTGAGTCCTTTTTCTCTTAAATTTGCGGG 659
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 570 AGATGACTTTGATGCTAAAAAGCTAGATACTTTGAGTCCTTTTTCTCCTAAATTTGCTGG 629
Query 660 TACCAAGGAGAAAGTGAAGAGCTCGAGGAGTGTTGACGGAGTTATAAGGAACAAAGGTTT 719
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 630 TACCAAGGAGAAAGTGAAGAGCTCGAGGAGTGTTGTTGGAGTTATAAGGAACAAAGGTTT 689
Query 720 GTTTGGTCGGAGGAAGTTTAGGAAGAATGATAGTTCAACTGAAGAGGATTCAGAGGAAGA 779
|||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 690 GTTTGGAAGAAGGAAGTTTAGGAAGAACGATAGTTCAACTGAAGAGGATTCAGATGAAGA 749
Query 780 AGGCGAAGAGGGAAAGATGATAGGTTGGATGGATTTGAGGAAAACAGGAAGCAGTGCGTC 839
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 750 AGGCGATGAGGGAAAGATGATAGGTTGGATGGATATGAGGAAAACGGGAAGCAGTGCGTC 809
Query 840 GTTAGGAAACCACGATATCAAACTGACGAAAAGAGTGAATCGTAATGTCACGGACGAAGA 899
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 810 GTTAGGGAACCACGATATCAAGCTGACGAAAAGAGTGAATCGTAATGTCACGGATGAAGA 869
Query 900 GCTATATCCTCCGTTAGATATTAATACAGTCAGAGAAGATCTCAGTAAAAGAAAATCTGT 959
||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 870 GCTTTATCCTCCTTTGGATATTAATACAGTTAGAGAAGATCTCAGTAAAAGAAAATCTGT 929
Query 960 GGATAATGTAATAAAGGAGAACCGAGAGCCTCATGACTCGTTTTACAGTAG-GAAAAGAT 1018
|||||||||||| ||||||| | |||||||||||||||| |||||||| | |||||||
Sbjct 930 GGATAATGTAATGGAGGAGAAGCAAGAGCCTCATGACTCGATTTACAGT-GCAAAAAGAT 988
Query 1019 TTGATGAGTCTAGTATATCTCCTTTGACTCTCAAGGCACTTTCCGCGTCTGGCATTGTTA 1078
||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| |||
Sbjct 989 TTGATGAGTCTTGTATATCTCCTTTGACGCTAAAGGCACTTTCTGCGTCTGGCATTCTTA 1048
Query 1079 ATATGACTAGAGTACAAGATGCCACTCTCTCTGAGTGCCTCGATGGTAAAGATGCGTTAG 1138
| |||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1049 AGATGACTAGAGTACAGGATGCCACTCTCTCTGAGTGCCTAGACGGTAAAGATGCATTAG 1108
Query 1139 TCAAAGCCAAAACCGGGACGGGGAAA-AGCATGGCCTTTTTGCTTCCTGCAATTGAAACA 1197
||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1109 TCAAAGCCAAAACTGGGAC-GGGAAAGAGCATGGCGTTTTTGCTTCCTGCAATTGAAACA 1167
Query 1198 GTTCTGAAAGCTATGAACAACGGTAACAGTGTTCACAAAGTTCCTCCAATATTTGCTCTT 1257
||||||||||||||||||| |||||| | ||| |||||||| |||| || |||||||||
Sbjct 1168 GTTCTGAAAGCTATGAACAGCGGTAAGGGCGTTAACAAAGTTGCTCCGATTTTTGCTCTT 1227
Query 1258 ATCCTCTGTCCCACAAGAGAACTTGCGAGTCAGATTTCTGCAGAGGGCATGGCTCTGCTC 1317
|||||||||||||||||||||||||| || ||||| |||||||||||| |||||| |||
Sbjct 1228 ATCCTCTGTCCCACAAGAGAACTTGCAAGCCAGATCGCTGCAGAGGGCAAGGCTCTACTC 1287
Query 1318 AAATACCACGACGGTATCGGTGTTCAGACTTTAATTGGAGGTACCCGCTTCAAACTTGAT 1377
|||| ||| ||||| || |||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 1288 AAATTCCATGACGGGATTGGTGTTCAGACTCTAATTGGTGGTACACGCTTCAAACTTGAT 1347
Query 1378 CAGCAACGCCTAGAATCCGAGCCATGCCAGATACTAATTGCAACTCCAGGAAGACTCTTG 1437
|| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1348 CAACAACGCCTAGAATCTGAGCCATGTCAGATACTAATAGCAACTCCGGGAAGACTCTTG 1407
Query 1438 GATCATATAGAGAATAAGTCTGGCTTAACATCACGTTTGATGGCGCTTAAATTGTTTATA 1497
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1408 GATCATATAGAGAATAAGTCTGGCTTAACATCGCGTTTGATGGCGCTTAAATTGTTTATA 1467
Query 1498 GTTGATGAGGCTGATCTTTTACTAGACTTAGGATTCAGGAGAGATGTCGAAAAAATCATA 1557
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1468 GTTGACGAGGCTGACCTTTTGCTAGACTTAGGATTCAGGAGAGATGTCGAAAAAATCATA 1527
Query 1558 GATTGTTTGCCTCGTCAAAGACAATCTCTTCTCTTTTCTGCAACCATCCCAAAAGAGGTC 1617
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1528 GATTGTTTGCCTCGTCAGAGACAATCTCTTCTCTTTTCTGCAACCATTCCGAAAGAGGTC 1587
Query 1618 CGTCGAGTCTCGCAGCTTGTTTTGAAAAGGGATCACTCTTATATCGACACAATCGGTCTT 1677
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1588 CGTCGAGTCTCACAGCTTGTTTTGAAAAGGGATCACTCTTATATCGACACAATCGGGCTC 1647
Query 1678 GGTTGTGTAGAGACTCATGATAAGGTGAAGCAATCTTGTATTGTTGCTCCTCACGATTCT 1737
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 1648 GGTTGTGTAGAGACTCATGATAAGGTGAGGCAATCTTGTATTGTTGCTCCACACGAATCT 1707
Query 1738 CATTTCCACTTAGTACCTCATCTACTAAAAGAGCACATCAGCAACACGCTTGATTATAAG 1797
||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 1708 CATTTCCACTTAGTACCTCATCTTCTAAAAGAGCACATCAACAACACGCCTGATTATAAG 1767
Query 1798 ATAATAGTCTTCTGCTCAACTGGTATGGTAACATCACTGATGTATACTCTGCTCCGGGAA 1857
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1768 ATAATAGTCTTTTGCTCAACCGGTATGGTAACATCACTGATGTATACTCTACTCCGGGAA 1827
Query 1858 ATGAAATTGAACGTTAGGGAGATTCATGCTAGAAAACCTCAGCTTCATAGAACACGTGTA 1917
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1828 ATGAAATTGAACGTTAGGGAGATTCATGCTAGAAAACCTCAGCTCCATAGAACACGTGTA 1887
Query 1918 TCAGACGAGTTTAAGGAATCGAAA-AGACTGATTCTTGTCACATCTGATGTATCTGCTCG 1976
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1888 TCAGACGAGTTTAAGGAATC-AAATAGACTGATTCTTGTCACATCTGATGTATCTGCTCG 1946
Query 1977 TGGAATGAACTATCCAGATGTTACTTTGGTTATACAGGTGGGTATACC 2024
||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1947 TGGAATGAACTATCCAGATGTTACTTTGGTTATTCAGGTCGGTATACC 1994
Score = 527 bits (285), Expect = 2e-148
Identities = 314/328 (96%), Gaps = 1/328 (0%)
Strand=Plus/Plus
Query 2056 GATTGC-CCATGGGAGAGATATTTTCTTGATGAGCTTAAAGATTTGCCTCTTGAACCAAT 2114
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2070 GATTGCGCCATGGGAGAGATATTTTCTTGATGAGCTTAAAGATTTGCCACTTGAACCAAT 2129
Query 2115 TCCAGTTCCAGATCTTGATTCAAGAGTTAATCTTCAGGTTGATCAGTCAATGGCTAAGAT 2174
||||| ||| ||||||||||||| |||||| | ||||||||||||||| |||||||||||
Sbjct 2130 TCCAGCTCCGGATCTTGATTCAATAGTTAAACATCAGGTTGATCAGTCGATGGCTAAGAT 2189
Query 2175 TGATACAAGTATTAAAGAAGCAGCGTACCATGCTTGGCTCGGTTATTACAACTCGGTTCG 2234
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2190 TGATACAAGTATCAAAGAAGCAGCGTACCATGCATGGCTCGGTTATTACAACTCGGTTCG 2249
Query 2235 AGAAACAGGTAGAGACAAAACCACGTTGGCCGAGTTAGCCAACCGGTTTTGCCATTCTAT 2294
|||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 2250 AGAAACCGGTAGAGACAAAACCACGTTAGCCGAGTTAGCTAATCGGTTTTGCCATTCTAT 2309
Query 2295 CGGTTTAGAGAAACCTCCTGCTTTGTTTCGAAGAACCGCGGTTAAGATGGGTCTCAAAGG 2354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2310 CGGTTTAGAGAAACCTCCTGCTTTGTTTCGAAGAACCGCGGTTAAGATGGGTCTCAAAGG 2369
Query 2355 TATTTCTGGTATTCCAATCCGAAAATAA 2382
||||||||||||||||||||||||||||
Sbjct 2370 TATTTCTGGTATTCCAATCCGAAAATAA 2397
> AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576465-3580525 FORWARD LENGTH=2685
Length=2685
Score = 2207 bits (1195), Expect = 0.0
Identities = 1447/1568 (92%), Gaps = 20/1568 (1%)
Strand=Plus/Plus
Query 464 CTATTGATGTGAGGAAG-TTAGTTAGTGGGACATGTTATTCAATGGGT-AATAGTCGGGT 521
|||||||||||||| || |||||| || ||||||| ||||||||||| || | ||| ||
Sbjct 599 CTATTGATGTGAGG-AGATTAGTTTCTGCGACATGTGATTCAATGGGTAAACA-TCGTGT 656
Query 522 TTTCGATCGTAGTAGGAGAGGTTTTTCGAGTATGAGTAGAGGTAGATTTAAGAGAAATGA 581
||| ||| |||||||||||||||||||||| | | | || |||||||||||||||||||
Sbjct 657 TTTGGATAGTAGTAGGAGAGGTTTTTCGAG--T-A-T-GA-GTAGATTTAAGAGAAATGA 710
Query 582 GAGTTCTTGTGATGAAGGAGATGACTTTGATGCTAAAAAGTTAGATACTTTGAGTCCTTT 641
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 711 GAGTTCTTGTGATGAAGGAGATGACGTTGATGCTAAAAAGTTAGATACTTTGAGTCCTTT 770
Query 642 TTCTCTTAAATTTGCGGGTACCAAGGAGAAAGTGAAGAGCTCGAGGAGTGTTGACGGAGT 701
||||| ||||||| | |||||||||||||||||||||||||||| |||||||| |||||
Sbjct 771 TTCTCCTAAATTTTCTGGTACCAAGGAGAAAGTGAAGAGCTCGACGAGTGTTGTTGGAGT 830
Query 702 TATAAGGAACAAAGGTTTGTTTGGTCGGAGGAAGTTTAGGAAGAATGATAGTTCAACTGA 761
|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 831 TATAAGGAACAAAGGTTTGTTTGGAAGAAGGAAGTTTAGGAAGAACGATAGTTCAACTGA 890
Query 762 AGAGGATTCAGAGGAAGAAGGCGAA-GAGGGAAAGATGATAGGTTGGATGGATTTGAGGA 820
|||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 891 AGAGGATTCAGATGAAGAAGGC-AATGAGGGAAAGATGATAGGTTGGATGGATTTGAGGA 949
Query 821 AAACAGGAAGCAGTGCGTCGTTAGGAAACCACGATATCAAACTGACGAAAAGAGTGAATC 880
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 950 AAACAGGAAGCAGTGCGTCGTTAGGAAACCACGATATCAAGCTGACGAAAAGAGTGAATC 1009
Query 881 GTAATGTCACGGACGAAGAGCTATATCCTCCGTTAGATATTAATACAGTCAGAGAAGATC 940
|||||||||| ||||||||||| |||||||| || |||||||||| ||| ||||||||||
Sbjct 1010 GTAATGTCACAGACGAAGAGCTTTATCCTCCTTTGGATATTAATAGAGTTAGAGAAGATC 1069
Query 941 TCAGTAAAAGAA-AATCTGTGGATAATGTAATAAAGGAGAACCGAGAGCCTCATGACTCG 999
||||||||| || ||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 1070 TCAGTAAAA-AACAATCTGTGGATAATGTAATGGAGGAGAAGCAAGAGCCTCATGACTCG 1128
Query 1000 TTTTACAGTAGGAAAA-GATTTGATGAGTCTAGTATATCTCCTTTGACTCTCAAGGCACT 1058
|||||||| | |||| |||||||||||||| |||||||||||||||| || ||||| ||
Sbjct 1129 ATTTACAGT-GCAAAAAGATTTGATGAGTCTTGTATATCTCCTTTGACGCTTAAGGCGCT 1187
Query 1059 TTCCGCGTCTGGCATTGTTAATATGACTAGAGTACAAGATGCCACTCTCTCTGAGTGCCT 1118
||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1188 TTCTGCGTCTGGCATTGTTAAGATGACTAGAGTGCAGGATGCCACTCTCTCTGAGTGCCT 1247
Query 1119 CGATGGTAAAGATGCGTTAGTCAAAGCCAAAACCGGGACGGGGAAA-AGCATGGCCTTTT 1177
|| ||||||||||| |||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 1248 AGACGGTAAAGATGCATTAGTCAAAGCCAAAACCGGGACGGG-AAAGAGCATGGCGTTTT 1306
Query 1178 TGCTTCCTGCAATTGAAACAGTTCTGAAAGCTATGAACAACGGTAACAGTGTTCACAAAG 1237
||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 1307 TGCTTCCTGCAATTGAAACAGTTCTGAAAGCTATGAACAGCGGTAAGGGCGTTCACAAAG 1366
Query 1238 TTCCTCCAATATTTGCTCTTATCCTCTGTCCCACAAGAGAACTTGCGAGTCAGATTTCTG 1297
|| |||| || |||| ||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 1367 TTGCTCCGATTTTTGTTCTTATCCTCTGTCCTACAAGAGAACTTGCAAGCCAGATCGCTG 1426
Query 1298 CAGAGGGCATGGCTCTGCTCAAATACCACGACGGTATCGGTGTTCAGACTTTAATTGGAG 1357
||||||||| ||||||||||||| |||| ||||| ||||||||||||||| ||||||| |
Sbjct 1427 CAGAGGGCAAGGCTCTGCTCAAAAACCATGACGGGATCGGTGTTCAGACTCTAATTGGTG 1486
Query 1358 GTACCCGCTTCAAACTTGATCAGCAACGCCTAGAATCCGAGCCATGCCAGATACTAATTG 1417
|||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1487 GTACGCGCTTCAGACTTGATCAACAACGCCTAGAATCTGAGCCATGCCAGATACTAATAG 1546
Query 1418 CAACTCCAGGAAGACTCTTGGATCATATAGAGAATAAGTCTGGCTTAACATCACGTTTGA 1477
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1547 CAACTCCGGGAAGACTCTTGGATCATATAGAGAATAAGTCTGGCTTAACATCGCGTTTGA 1606
Query 1478 TGGCGCTTAAATTGTTTATAGTTGATGAGGCTGATCTTTTACTAGACTTAGGATTCAGGA 1537
|||| |||||||||||||||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 1607 TGGCCCTTAAATTGTTTATAGTTGACGAGGCTGATCTATTGCTAGACTTAGGATTCAAGA 1666
Query 1538 GAGATGTCGAAAAAATCATAGATTGTTTGCCTCGTCAAAGACAATCTCTTCTCTTTTCTG 1597
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1667 GAGATGTTGAAAAGATCATAGATTGTTTGCCTCGTCAGAGACAATCTCTTCTCTTTTCCG 1726
Query 1598 CAACCATCCCAAAAGAGGTCCGTCGAGTCTCGCAGCTTGTTTTGAAAAGGGATCACTCTT 1657
||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1727 CAACCATTCCAAAAGAGGTCCGTCGAGTCTCACAACTTGTTTTAAAAAGGGATCACTCTT 1786
Query 1658 ATATCGACACAATCGGTCTTGGTTGTGTAGAGACTCATGATAAGGTGAAGCAATCTTGTA 1717
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1787 ATATCGACACAATCGGGCTCGGTTGTGTAGAAACTCATGATAAGGTGAAGCAATCTTGTA 1846
Query 1718 TTGTTGCTCCTCACGATTCTCATTTCCACTTAGTACCTCATCTACTAAAAGAGCACATCA 1777
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1847 TTGTTGCTCCACACGAATCTCATTTCCACTTAGTACCTCATCTTCTAAAAGAGCACATCA 1906
Query 1778 GCAACACGCTTGATTATAAGATAATAGTCTTCTGCTCAACTGGTATGGTAACATCACTGA 1837
||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1907 ACAACATGCCTGATTATAAGATAATAGTCTTTTGCTCAACCGGTATGGTAACATCACTGA 1966
Query 1838 TGTATACTCTGCTCCGGGAAATGAAATTGAACGTTAGGGAGATTCATGCTAGAAAACCTC 1897
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 TGTACACTCTGCTCCGGGAAATGAAATTGAACGTTAGGGAGATTCATGCTAGAAAACCTC 2026
Query 1898 AGCTTCATAGAACACGTGTATCAGACGAGTTTAAGGAATCGAAA-AGACTGATTCTTGTC 1956
|||| ||||||||| ||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 2027 AGCTCCATAGAACATGTGTATCAGACGAGTTTAAGGAATC-AAATAGACTTATTCTTGTC 2085
Query 1957 ACATCTGATGTATCTGCTCGTGGAATGAACTATCCAGATGTTACTTTGGTTATACAGGTG 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2086 ACATCTGATGTATCTGCTCGTGGAATGAACTATCCAGATGTTACTTTGGTTATTCAGGTC 2145
Query 2017 GGTATACC 2024
||||||||
Sbjct 2146 GGTATACC 2153
Score = 544 bits (294), Expect = 2e-153
Identities = 317/328 (97%), Gaps = 1/328 (0%)
Strand=Plus/Plus
Query 2056 GATTGC-CCATGGGAGAGATATTTTCTTGATGAGCTTAAAGATTTGCCTCTTGAACCAAT 2114
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2229 GATTGCGCCATGGGAGAGATATTTTCTTGATGAGCTTAAAGATTTACCTCTTGAACCAAT 2288
Query 2115 TCCAGTTCCAGATCTTGATTCAAGAGTTAATCTTCAGGTTGATCAGTCAATGGCTAAGAT 2174
||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2289 TCCAGCTCCAGATCTTGATTCAAGAGTTAAACATCAGGTTGATCAGTCAATGGCTAAGAT 2348
Query 2175 TGATACAAGTATTAAAGAAGCAGCGTACCATGCTTGGCTCGGTTATTACAACTCGGTTCG 2234
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2349 TGATACAAGTATCAAAGAAGCAGCGTACCATGCATGGCTCGGTTATTACAACTCGGTTCG 2408
Query 2235 AGAAACAGGTAGAGACAAAACCACGTTGGCCGAGTTAGCCAACCGGTTTTGCCATTCTAT 2294
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2409 AGAAACCGGTAGAGACAAAACCACGTTGGCCGAGTTAGCTAATCGGTTTTGCCATTCTAT 2468
Query 2295 CGGTTTAGAGAAACCTCCTGCTTTGTTTCGAAGAACCGCGGTTAAGATGGGTCTCAAAGG 2354
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2469 CGGTTTAGAGAAACCTCCTGCTTTGTTTCGAAGAACCGCGGTTAAGATGGGTCTTAAAGG 2528
Query 2355 TATTTCTGGTATTCCAATCCGAAAATAA 2382
||||||||||||||||||||||||||||
Sbjct 2529 TATTTCTGGTATTCCAATCCGAAAATAA 2556
Score = 538 bits (291), Expect = 9e-152
Identities = 337/360 (94%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 44 GGTCCTTATGGAGCCAAATCTTCTCTCGGAACATGGGTGGTGGTCCGAGAACTTTCCCTG 103
|||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 212 GGTCCTTATGGAACCGAATATTCTCTCGGAACATGGGTGGTGGTCCGAGAACTTTCCCTG 271
Query 104 GAGGGCTGAACAAGTGGCAATGGAAACGTATGCACGAGAAGAAAGCTAGAGAGAAAGAGA 163
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 272 GAGGACTAAACAAGTGGCAATGGAAACGTATGCACGAGAAGAAAGCAAGAGAGAAAGAGA 331
Query 164 ACAAGCTCTTGGATCAAGAGAAACAGCTTTACGAAGCTCGAATTAGGACCGAGATCCGAG 223
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 332 ACAAGCTCTTGGATCAAGAGAAACAGCTTTACGAAGCTCGAATTCGGACCGAGATCCGAG 391
Query 224 CTAAAATGTGGGGAAATCCAGATTCCGGCGAGAAAACGGCGAAATCGAAGCAGAGTCACG 283
||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 392 CTAAAATGTGGGGTCATCCAGATTCCGGTGAGAAAACGGCGAAATTGAAGCAGAGTCATG 451
Query 284 GACCAATGAGCCCGAAAGAACATATCAAAACTTTGGCTGATCGGTTTATGAAAGCTGGAG 343
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 452 GACCAATGAGCCCGAAAGAACATATCAAAACCTTGGCTGATCGGTTTATGAAAGCTGGTG 511
Query 344 CAGAGGATTTGTGGAACGAGAACGATGGGCCGGTGAAGGAATCAGATGATGGGTCGGGAT 403
|||| |||||||||||||| |||||||| ||||||||| ||| ||| | |||||| |||
Sbjct 512 CAGATGATTTGTGGAACGATAACGATGGTCCGGTGAAGAAATTTGATCAAGGGTCGAGAT 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118272484020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5