BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315087

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63206.1 | Symbols:  | Cystatin/monellin superfamily protein...   649    0.0  


> AT1G63206.1 | Symbols:  | Cystatin/monellin superfamily protein 
| chr1:23439642-23440931 FORWARD LENGTH=833
Length=833

 Score =  649 bits (351),  Expect = 0.0
 Identities = 482/543 (89%), Gaps = 17/543 (3%)
 Strand=Plus/Plus

Query  1    ATGCTGGGACGTGTGTATCTGAGTTACGAGGTTGGTTCTTTTCCTAAGAATCTGATTCCT  60
            |||| |||||||||||||||| |||||||||||||||| ||||||  |||| ||||||||
Sbjct  1    ATGCCGGGACGTGTGTATCTGTGTTACGAGGTTGGTTCGTTTCCTGTGAATTTGATTCCT  60

Query  61   CCGCATATTCGACGGGACGAGAATAAAGAGCCTAAGTACACGACACA-GCAAGAGTGTGT  119
            |||||||| ||| |||||||||| |||||||||| |||||||| ||| | ||||||||||
Sbjct  61   CCGCATATACGATGGGACGAGAAGAAAGAGCCTATGTACACGAGACATG-AAGAGTGTGT  119

Query  120  TATGATGAGAAGACAAGTCAGGAAGAGCAAGGGGTTCGACATCGATTTCACACAGTTCCG  179
            |||||||||||||||||| | |||||||||||| || |||||||||||||||||||| ||
Sbjct  120  TATGATGAGAAGACAAGTGAAGAAGAGCAAGGGTTTTGACATCGATTTCACACAGTTTCG  179

Query  180  CTCTGTTTTCAATTACCGCCCTGTTAATTTTGAC--T---G--TA-AA-GAGTATTCTTT  230
            |||||| |||||||||||||||||| |||| |||  |   |  || || |||||||||||
Sbjct  180  CTCTGTGTTCAATTACCGCCCTGTTGATTTAGACGATTTAGACTATAAAGAGTATTCTTT  239

Query  231  GGCACCAGAAACCACTAGGGGGTTACTCGAGAGGCTGTCTCGAAACTCCCTTAAGAACTA  290
            |||| |||||||||||| || ||||||| |||||||||||| ||||||||||||||||||
Sbjct  240  GGCAACAGAAACCACTACGGAGTTACTCAAGAGGCTGTCTCAAAACTCCCTTAAGAACTA  299

Query  291  CAACAAAGAATGGTTTACAGAATATGAATTTCTCAATGTTGTCAAAGCCAATTCTTACAT  350
            |||   ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  300  CAATTCAGAATTGTTTACAGAATATGAATTTCTCAAGGTTGTCAAAGCCAATACTTACAT  359

Query  351  GTGTTCTGGG------AGAATGTTTTTCATAACCTTTGAGGTTCGAGATCCTTACGACAA  404
            |||| |||||      ||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct  360  GTGTACTGGGCCTGGTAGAATGTATTTCATAACCTTTGAGGTTAGAGATCCTTACGATAA  419

Query  405  CCTGCCAAAGCTCTTCCAAGCTAGGGTCCGCTATTATTATGATGTTACGGATGACTACAT  464
            ||||| ||||||||| ||| ||||||||||| || |||||||||||||||||||||||||
Sbjct  420  CCTGCTAAAGCTCTTTCAAACTAGGGTCCGCCATGATTATGATGTTACGGATGACTACAT  479

Query  465  ATTATGCAGACCAAAACCCAATCAGAAAGTCAAATGCGTTGGAACTTCCAGGAAACATAA  524
            ||||||||||||||| ||| ||||||||||||||||||||||| |||||| || ||||||
Sbjct  480  ATTATGCAGACCAAAGCCCTATCAGAAAGTCAAATGCGTTGGATCTTCCAAGACACATAA  539

Query  525  AAG  527
            |||
Sbjct  540  AAG  542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5