BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315116
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62886.1 | Symbols: | Nucleotide excision repair, TFIIH, su... 333 4e-91
> AT1G62886.1 | Symbols: | Nucleotide excision repair, TFIIH,
subunit TTDA | chr1:23294413-23294710 FORWARD LENGTH=219
Length=219
Score = 333 bits (180), Expect = 4e-91
Identities = 208/221 (94%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 1 ATGGTTAACTCAATCAAAGGAGTCTTCATCTCATGCGATGTTCCCATGGCACAGTTCATT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTTAACTCAATCAAAGGAGTCTTCATCTCATGTGATGTTCCCATGGCACAGTTCATT 60
Query 61 GCACATTTGAATAATTCGTTGCCTGCTTCACAGAAGTTCATAATTCGAGTACTGAAACTG 120
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 GCACATTTGAACAATTCGTTGCCTGCTTCACAGAAGTTCATAATTCAAGTACTGAAACTG 120
Query 121 GACACTACTTGTATATTTGTGAAGCCACATGCTGAGGAGATGATCCGT-AGTGCCTTCAT 179
||||||||| |||| |||||||||||| |||||||||||||||||||| | |||| ||||
Sbjct 121 GACACTACTAGTATGTTTGTGAAGCCATATGCTGAGGAGATGATCCGTGA-TGCCGTCAT 179
Query 180 CAATTTCAGGGATC-AAAACTCTTACGCAAAGGCCAATTGA 219
||| |||||||| | ||||||||||||||||||| ||||||
Sbjct 180 CAAGTTCAGGGA-CGAAAACTCTTACGCAAAGGCGAATTGA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5