BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg315116 Length=219 Score E Sequences producing significant alignments: (Bits) Value AT1G62886.1 | Symbols: | Nucleotide excision repair, TFIIH, su... 333 4e-91 > AT1G62886.1 | Symbols: | Nucleotide excision repair, TFIIH, subunit TTDA | chr1:23294413-23294710 FORWARD LENGTH=219 Length=219 Score = 333 bits (180), Expect = 4e-91 Identities = 208/221 (94%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 1 ATGGTTAACTCAATCAAAGGAGTCTTCATCTCATGCGATGTTCCCATGGCACAGTTCATT 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGTTAACTCAATCAAAGGAGTCTTCATCTCATGTGATGTTCCCATGGCACAGTTCATT 60 Query 61 GCACATTTGAATAATTCGTTGCCTGCTTCACAGAAGTTCATAATTCGAGTACTGAAACTG 120 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 GCACATTTGAACAATTCGTTGCCTGCTTCACAGAAGTTCATAATTCAAGTACTGAAACTG 120 Query 121 GACACTACTTGTATATTTGTGAAGCCACATGCTGAGGAGATGATCCGT-AGTGCCTTCAT 179 ||||||||| |||| |||||||||||| |||||||||||||||||||| | |||| |||| Sbjct 121 GACACTACTAGTATGTTTGTGAAGCCATATGCTGAGGAGATGATCCGTGA-TGCCGTCAT 179 Query 180 CAATTTCAGGGATC-AAAACTCTTACGCAAAGGCCAATTGA 219 ||| |||||||| | ||||||||||||||||||| |||||| Sbjct 180 CAAGTTCAGGGA-CGAAAACTCTTACGCAAAGGCGAATTGA 219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9802211055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5