BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315131
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62710.1 | Symbols: BETA-VPE, BETAVPE | beta vacuolar proces... 1709 0.0
> AT1G62710.1 | Symbols: BETA-VPE, BETAVPE | beta vacuolar processing
enzyme | chr1:23223874-23226916 REVERSE LENGTH=1716
Length=1716
Score = 1709 bits (925), Expect = 0.0
Identities = 1041/1097 (95%), Gaps = 8/1097 (1%)
Strand=Plus/Plus
Query 513 GGACTATACCGGTAGTAACGTTACGGCTGCGAACTTCTATGCGGTGCTTCTAGGCGACCA 572
||||||||| ||||||| |||||||||||| |||||||| || || || |||||||||||
Sbjct 428 GGACTATACTGGTAGTAGCGTTACGGCTGCAAACTTCTACGCTGTACTCCTAGGCGACCA 487
Query 573 GAAGGCTGTTAAAGGTGGAAGTGGTAAGGTCATCGCTAGCAAGCCTAACGATCACATTTT 632
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 488 GAAGGCTGTTAAAGGTGGAAGCGGTAAGGTCATCGCTAGCAAGCCCAACGATCACATTTT 547
Query 633 CGTATATTATGCAGATCATGGTGGTCCCGGAGTTCTTGGGATGCCAAACACGCCTCACAT 692
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 CGTATATTATGCGGATCATGGTGGTCCCGGAGTTCTTGGGATGCCAAATACGCCTCACAT 607
Query 693 ATATGCGA-CTGATTTTATTGAAACACTTAAGAAGAAGCATGCTTCCGGAACATACAAAG 751
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 608 ATATGC-AGCTGATTTTATTGAAACGCTTAAGAAGAAGCATGCTTCCGGAACATACAAAG 666
Query 752 AGATGGTTATATACGTAGAAGCGTGTGAAAGCGGGAGTATTTTCGAAGGGATAATGCCAA 811
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 667 AGATGGTTATATACGTAGAAGCGTGTGAAAGTGGGAGTATTTTCGAAGGGATAATGCCAA 726
Query 812 AGGACTTGAAGATTTACGTAACAACGGCTTCAAATGCGCAAGAGAGTAGTTACGGAACAT 871
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 727 AGGACTTGAACATTTACGTAACAACGGCTTCAAATGCACAAGAGAGTAGTTATGGAACAT 786
Query 872 ATTGTCCCGGCATGAATCCGTCACCCCCATCTGAATATATCACTTGCTTAGGGGATTTAT 931
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ATTGTCCTGGCATGAATCCGTCACCCCCATCTGAATATATCACTTGCTTAGGGGATTTAT 846
Query 932 ATAGTGTTGCTTGGATGGAAGATAGTGAGACTCACAATTTAAAGAAAGAGACCATAAAGC 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ATAGTGTTGCTTGGATGGAAGATAGTGAGACTCACAATTTAAAGAAAGAGACCATAAAGC 906
Query 992 AACAATACCAAACGGTGAAGATGCGGACATCAAACTACAATACCTATTCAGGTGGCTCTC 1051
|||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 907 AACAATACCACACGGTGAAGATGAGGACATCAAACTACAATACCTACTCAGGTGGCTCTC 966
Query 1052 ATGTGATGGAATACGGTAACAATAGTATTAAGTCGGAGAAGCTTTAT-TTCTACCAAGGG 1110
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 967 ATGTGATGGAATACGGTAACAATAGTATTAAGTCGGAGAAGCTTTATCTT-TACCAAGGG 1025
Query 1111 TTTGATCCAGCCACCGTTAATCTCCCTCTaaaaaaaTTACCGATCAAGTCACAAGTGGGA 1170
|||||||||||||||||||||||||| ||||| |||||||| |||||||| || | |||
Sbjct 1026 TTTGATCCAGCCACCGTTAATCTCCCACTAAACGAATTACCGGTCAAGTCAAAAATAGGA 1085
Query 1171 GTCGTTAACCAACGCGACGCGGACCTTCTATTCCTTTGGCACATGTATCGGACATCGGAA 1230
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1086 GTCGTTAACCAACGCGACGCGGACCTTCTCTTCCTTTGGCATATGTATCGGACATCGGAA 1145
Query 1231 GATGGGTCAAGGAAGAAGGATGACACATTGAAGGAATTAACTGAGACAACGAGGCATCGG 1290
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1146 GATGGGTCAAGGAAGAAGGATGACACATTGAAGGAATTAACTGAGACAACAAGGCATAGG 1205
Query 1291 AAGCATTTAGATGCAAGCGTCGAATTGATAGGCACAATTTTGTTTGGTCCGACAATGAAT 1350
|| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1206 AAACATTTAGATGCAAGCGTCGAATTGATAGCCACAATTTTGTTTGGTCCGACGATGAAT 1265
Query 1351 GTTCTTAACTCGGTTAGAGAACCCGGTTTGCCTTTGGTCGACGATTGGGAATGTCTTAAA 1410
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1266 GTTCTTAACTTGGTTAGAGAACCCGGTTTGCCTTTGGTTGACGATTGGGAATGTCTTAAA 1325
Query 1411 TCGATGGTACGCGTATTTGAA-ACACATTGTGGATCACTAACGCAATACGGGATGAAACA 1469
||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 1326 TCGATGGTACGTGTATTTGAAGAG-CATTGTGGATCACTAACGCAATATGGGATGAAACA 1384
Query 1470 TATGCGAGCGTTTGCAAATGTTTGTAACAACGGTGTC-CCGAAAGAGCTGCTGGAGGAAG 1528
|||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||
Sbjct 1385 TATGCGAGCGTTTGCAAACGTTTGTAACAACGGTGTGTCC-AAAGAGCTGATGGAGGAAG 1443
Query 1529 CTTCCGCTGCAGCATGCGGTGGTTATAATGAGGCTCGCTACACGTTGCATCCATCAATCG 1588
|||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1444 CTTCTACTGCGGCATGCGGTGGTTATAGTGAGGCTCGCTACACGGTGCATCCATCAATCT 1503
Query 1589 TAGGCTATAGCGCCTGA 1605
|||||||||||||||||
Sbjct 1504 TAGGCTATAGCGCCTGA 1520
Score = 551 bits (298), Expect = 8e-156
Identities = 352/378 (93%), Gaps = 4/378 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATTCTTGCTATTTCAGACCAGCTCTTCTTCTTCTACTACTTCTCTTGGTTCGG 60
|||||||| |||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 60 ATGGCTAAGTCTTGCTATTTCAGACCAGCTCTTCTTCTTCTGTTAGTTCTTTTGGTTCAT 119
Query 61 GCAGAGTCACGAGGTCAGTTCGAGCCAAAGATTCTTTTGCCGACAGAGAAAACTAAACCG 120
|| |||||||| |||| ||||||||||||||||||| ||||||||||| || || ||||
Sbjct 120 GCCGAGTCACGCGGTCGGTTCGAGCCAAAGATTCTTATGCCGACAGAGGAAGCT-AACC- 177
Query 121 ACAGCTGACCAAGACGAAGATGGTATCGGTACAAGATGGGCGGTTCTCGTCGCCGGTTCT 180
| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 178 -CGGCTGACCAAGACGAAGATGGTGTCGGTACAAGATGGGCGGTTCTCGTCGCTGGTTCT 236
Query 181 TCTGGATATGGAAACTACAGACACCAGGCTGACGTGTGTCACGCATATCAAATACTAAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTGGATATGGAAACTACAGACACCAGGCTGACGTGTGTCACGCATATCAAATACTAAGA 296
Query 241 AAAGGAGGTTTAAAGGAAGAGAACATAGTAGTTTTGATGTATGATGATATCGCAAACCAC 300
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 297 AAAGGAGGTTTAAAGGAAGAAAACATAGTCGTTTTGATGTATGATGATATCGCAAACCAC 356
Query 301 CCACTTAATCCTCGTCCGGGTACTATCATCAATCATCCTGACGGCGACGATGTTTACGCC 360
|||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 357 CCACTTAATCCTCGTCCGGGTACTCTCATCAACCATCCTGACGGTGACGATGTTTACGCC 416
Query 361 AGAGTCCCTAAGGTACTA 378
|||||||||||| ||||
Sbjct 417 GGAGTCCCTAAGG-ACTA 433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5