BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315144
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62530.1 | Symbols: | Plant protein of unknown function (DU... 747 0.0
> AT1G62530.1 | Symbols: | Plant protein of unknown function (DUF863)
| chr1:23146332-23148367 REVERSE LENGTH=1065
Length=1065
Score = 747 bits (404), Expect = 0.0
Identities = 524/579 (91%), Gaps = 20/579 (3%)
Strand=Plus/Plus
Query 1 ATGTATCTCCACGGTTTGTCCAACGACGATATTTCGTGTAAGAAACGTTTTGAATCGTAT 60
||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||
Sbjct 127 ATGTATCTCCACGGTTTGTCCAAGGACGAAATTTTGTGCAAGAAACGTTTTGAATCGTAT 186
Query 61 GAAGAAAGTTCTAAGAAGAATCAAATCAGAATGGTAACTCTTTTTGGGCAGCAGGTGTAT 120
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 187 GAAGAAAGTTCTAAGAAAAATCAAATTAGAATGGTCACTCTTTTTGGGCAGCAGGTGTAT 246
Query 121 ATC-GCGAA-AGGCGAAAGCTTTGTTTCGGGTAACGAGCAGGTGAATAGAAACTGCCTTA 178
| | || || || ||| |||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 247 A-CAGC-AAGAGACGAGAGCTTTGTGTCGTGTAATGAGCAGGTGAATAGAAACTGCCTTA 304
Query 179 ACCCACTGATGAAAGATTGTGATCTTTTACTT-CTCGAAAATCATGAAAGCGTCGAATGC 237
| ||||||||| |||||||||||||| |||| || |||||||||||||||||||||| |
Sbjct 305 ATCCACTGATGGAAGATTGTGATCTTCAACTTCCT-GAAAATCATGAAAGCGTCGAATAC 363
Query 238 CAAGAATTCCACAGCATTGGTTGTTCCCAAGATACCAT--A--T--GGATTGAAGCATAT 291
| |||||||||||||||||||| ||||||||||| ||| | | ||||||||||||||
Sbjct 364 CGAGAATTCCACAGCATTGGTTCTTCCCAAGATAGCATAGATTTGAGGATTGAAGCATAT 423
Query 292 GGCACAAATTTGTTTGGCAAGAAAAGTGAGAAAGTGAATATCTT-AGATGGATCAGGTTT 350
||||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 424 GGCACAAATTTGTGTGGCAAGAAAAGTGAGAAAGTGAATAT-TTCAGATGGATCATGTTT 482
Query 351 GCTGGATCTTAATAAAACCCCGGCTTATGAGCCGGTTTCCAA-TGACT-ATCAATGCGGT 408
|||||||||||||||| |||||||||| |||||||||| ||| ||| | |||||||||||
Sbjct 483 GCTGGATCTTAATAAACCCCCGGCTTACGAGCCGGTTT-CAATTGA-TCATCAATGCGGT 540
Query 409 TTAAATGGTGTCCATGAAAAAGATTGGGCAGCATCTCCAGCTTCATGTTGCACCGCAGAA 468
||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 TTAGATGGTGTACATGAAAAAGATTGTTCAGCATCTCCAGCTTCATGTTGCACCGCAGAA 600
Query 469 AACAGTTCAAAGATTGAAGGTGAAGATTCGTGTGAAGTAATTCAAATGGCAGCTGAATGT 528
|||| ||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACAATTCAAGGACTGAAGGAGAAGATTCGTGTGAAGTAATTCAAATGGCAGCTGAATGT 660
Query 529 TTAGTCCACATTTCAGCGGTTACTC-TCAATCAAAGTCA 566
||||||||||| ||||| ||| ||| | |||||||||||
Sbjct 661 TTAGTCCACATCTCAGCTGTTTCTCAT-AATCAAAGTCA 698
Score = 523 bits (283), Expect = 1e-147
Identities = 340/367 (93%), Gaps = 5/367 (1%)
Strand=Plus/Plus
Query 598 GGTGTCCAAGAACCGGGTCGATCTTGCGATTCATTCGAGCTACACACTTTAGGAATAAGA 657
|||||||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||
Sbjct 700 GGTGTCCAAGAACCGGGTCGTTCTTGCGATTCATTTGAGCTACATACTTTAGAAATAAGA 759
Query 658 GAAACTATCCCTGAAGAGCTCTGTTGTGTATCATCAAAGGCCATAGATAACTTCAGTAAC 717
|||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 760 GAAACTGTCCCTGAAGAGCTCTGTTGTGTATCATCAAAGGCCATATATGACTTCAGTAAG 819
Query 718 AAGAAAGAGTTTGGAGTCAAGCTGAGAAGAGGGAGGAGAATGAAGAATTTCCAAAAAGAG 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 820 AAGAAAGAGTTTGGAGTCAAGCTGAGAAGAGGGAGGAGAATGAAGAATTTCCAAAAGGAG 879
Query 778 ATACTCCCGGAACTTGTATCGCTCTCTAGACATGAGATCCGAGAAGATATAAACCTCTTA 837
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 880 ATACTCCCGGAGCTTGTATCGCTCTCTAGACATGAGATTCGAGAAGATATTAACCTCTTA 939
Query 838 GAGACTATTTTGAGATCGAAAGATTACAAGAAGATGCAGGGGAAGAATACTAAAGATGGA 897
||||| |||| ||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 940 GAGACGGTTTTTAGATCGAGAGATTACAAGAAAATGCAGGGGAAGA---CTAAAGATGGA 996
Query 898 AAATGTAGACCAAACCGGAGAAACAACAAAGGTTTGACTCAAAGGTATGTAGGTAAAATG 957
||||| | |||||||| |||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 997 AAATGCAAACCAAACCTGAGAAACACCAAAGGTTTGACTCAAACGTATGTAGGTAAAA-G 1055
Query 958 A-GGAGA 963
| |||||
Sbjct 1056 AAGGAGA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5