BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315184
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gat... 2689 0.0
AT2G46440.1 | Symbols: ATCNGC11, CNGC11 | cyclic nucleotide-gat... 1736 0.0
> AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gated
channel 12 | chr2:19065716-19069569 FORWARD LENGTH=3199
Length=3199
Score = 2689 bits (1456), Expect = 0.0
Identities = 1812/1976 (92%), Gaps = 55/1976 (3%)
Strand=Plus/Plus
Query 1 ATGAATCATCAGAGGAGTAAATTTGCTAGGAATTTGGGGAGT-T--CTGTTGATGGAAAA 57
|||||||||| ||||||||||||||| ||| | | | ||| | ||||||||||||
Sbjct 130 ATGAATCATCGGAGGAGTAAATTTGCCAGG-A--TAGATAGTATGGGAGTTGATGGAAAA 186
Query 58 ATCAAAAGTGTTAGAGGAGGCTTGAAGAAGTTTTATC-AGAAGATGAAAACACT-GAAAA 115
| ||||||||||||||| ||||||||||| |||| | ||||||||||||||| | |||
Sbjct 187 TTGAAAAGTGTTAGAGGACGCTTGAAGAAGGTTTA-CGGGAAGATGAAAACACTCG-AAA 244
Query 116 ACTGGAGGAAGACTGTCTTGTTAGCTTGCGTGGTTGATTTGGCTATTGATCCTTTGTTTC 175
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 245 ACTGGAGGAAGACCGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGATCCTTTGTTTC 304
Query 176 TCTTTATCCCTTTGATTGATTCTAATAAATATTGCTTCACTTTCGACAAGAAACTTGCAG 235
| ||||||||||||||||||||| | | || |||||||||||||||||||| ||||| ||
Sbjct 305 TGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTTTCGACAAGACACTTGTAG 364
Query 236 TAGTAGTTTGTGTCATTCGTACTTTTAGTGACACATTCTATGTGATTCACATCATTT-TT 294
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 365 CAGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCACATCATTTATT 424
Query 295 CATCTTATAACCGAGATCATGGCTCCTCGTCCTGAAGCATCTTTTAGAGGCGAGATT-TC 353
||||||||||||||| ||| ||||||||| || |||||||||| |||||||||||| |
Sbjct 425 -ATCTTATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGCGAGATTGT- 482
Query 354 CGTGCATTCTAAGGCTACACGGAAAACACGTCACCTCTTTCAATTCATTGTTAACATTTT 413
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||| |
Sbjct 483 CGTGCATTCTAAGGCTACACTGAAAACACGTCTCCTCTTTCACTTCATTGTTGACATTAT 542
Query 414 CTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATTCCACGGTCTGCCTCGCT 473
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct 543 CTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCT 602
Query 474 AGTGTCAGAGAAAATACTGAAATGGATTATACTTTCTCAAT-TGTTACCAAGAATCATTC 532
|||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 603 GGTGTCAGAGAGAATACTGAAATGGATTATACTTAGTCAATATG-TACCAAGAATCATTC 661
Query 533 GTATGTATCCGCTTTACAAAGATGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGT 592
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 662 GTATGTATCCGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGT 721
Query 593 GGATTGGAGCTGCTTTAAACCTT-TTCCTTTACATGCTGCACAGTTATGTGTTTGGGGCT 651
|| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 722 GGGCTGGAGCTGCTTTAAA-CTTATTCCTTTACATGCTGCACAGTTATGTGTTTGGGGCT 780
Query 652 TTTTGGTACGTGAGTGCAGTAGAAAAGAAAAGCAAATGTTGGCGTGACGCGTGCGCTAGG 711
||||||||| ||||| || |||||| |||||||||||||||||||| |||||| ||||||
Sbjct 781 TTTTGGTACTTGAGTTCAATAGAAAGGAAAAGCAAATGTTGGCGTGCCGCGTGTGCTAGG 840
Query 712 ACATCCGACTGCGATCTCAC-G--A---ATCTGCTTTGTGGACGAGGTGGCAGAGACAAC 765
|||||||||||| ||||||| | | ||||||||||| ||||| |||||| ||||||
Sbjct 841 ACATCCGACTGCAATCTCACGGTCACGGATCTGCTTTGTAAACGAGCTGGCAGTGACAAC 900
Query 766 AGTCGTTTCCTTAACACTTCATGCCCCTTAATCGACCCTGCCCAAATCACAAACTCCACA 825
| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 ATTCGATTCCTCAACACTTCATGCCCATTAATCGACCCTGCCCAAATCACAAACTCCACA 960
Query 826 GACTTCAACTTTGGTATGT-TCATTGATGCATTGAAGTCAGGGGTGGTAGAGGTGAAACC 884
|||||| |||||||||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 961 GACTTCGACTTTGGTATGTAT-ATTGATGCATTGAAGTCAGGGGTGCTAGAGGTGAAACC 1019
Query 885 -AAGAGATTTTCCGAGGAAATTCCTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAGTG 943
||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAAG-GATTTTCCCAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAGTG 1078
Query 944 CTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATTTGT-TTTGCTATCATC 1002
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1079 CTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATTT-TCTTTGCTATCATC 1137
Query 1003 ATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTG 1197
Query 1063 CAATCATCAACGACTAGAGTAGATGAAATGGAGGAGAAAAAGAGAGACACAGAAAAATGG 1122
|||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1198 CAATCATCTACTACTAGAGTAGATGAAATGGAGGAGAAAAGGAGAGACACAGAAAAATGG 1257
Query 1123 ATGTCCTATCGGGTGATACCACAGTATTTGAAGGAACGCATTAGGAGATTCGAAGATTAC 1182
|||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1258 ATGTCCTACCGGGTGATACCAGAGTATTTGAAGGAACGCATTAGGAGATTTGAAGATTAC 1317
Query 1183 AAATGGCGAGAAACCAAAGGCACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGAC 1242
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAATGGCGAGAAACCAAGGGAACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGAC 1377
Query 1243 CTCAGACTCGAAACCAAACGCTATCTTTACTTGGATATGTTAAAGCGTGTTCCATGGCTT 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTCAGACTCGAAACCAAACGCTATCTTTACTTGGATATGTTAAAGCGTGTTCCATGGCTT 1437
Query 1303 GACTTCATGGATGATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTGAAGTCTGTGTTC 1362
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AACATCATGGATGATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTGAAGTCTGTGTTC 1497
Query 1363 TACTCAGCGAACAGCTACATAGTGAGAGAGGGGCACCCAGTTGAGGAAATGCTGATTGTA 1422
|| | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1498 TATTTAGCGAACAGCTTCATAGTGAGAGAGGGGCACCCAGTTGAGGAGATGCTGATTGTA 1557
Query 1423 ACTAGAGGCAATCTGAAAAGTACAACCGGATCTCATGAAATAGGTGGCCGCTACAATTGT 1482
|| |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 1558 ACGAGAGGCAAGCTGAAAAGTACAACCGGATCTCATGAAATGGGTGTCCGCAACAATTGT 1617
Query 1483 TGTTACCTCCAAGCTGGTGACATATGTGGAGAACTTCTCTTCAATGGTTCTCGCCTTCCC 1542
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TGTGACCTCCAAGATGGTGACATATGTGGAGAACTTCTCTTCAATGGTTCTCGCCTTCCT 1677
Query 1543 ACCTCAACTAGAACCATAATGACTCTGACTGAAGTTGAAGGCTTCATTCTCTTGCCTGAT 1602
|||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1678 ACCTCAACCAGAACCGTAATGACTTTGACTGAAGTTGAAGGTTTCATTCTCTTGCCTGAT 1737
Query 1603 GATGTCAATTTTATAGCGTCTCATTTAAATGCCTTTCAACGACAGAAACTCAAACAAACA 1662
||| |||| |||||||| ||||||||||||| ||||||| |||| |||||| ||| ||||
Sbjct 1738 GATATCAAGTTTATAGCTTCTCATTTAAATGTCTTTCAAAGACAAAAACTCCAACGAACA 1797
Query 1663 TTCAGGC-A-A---A-A--A-TGGCGCTCATGGGCGGCATTCTTCATTCAAAG-GGCATG 1712
|||||| | | | | | |||||||||||||| ||||||||||||||| | ||||||
Sbjct 1798 TTCAGGTTATACTCACAGCAATGGCGCTCATGGGCAGCATTCTTCATTCAA-GCGGCATG 1856
Query 1713 GAGGGAATATTGCAAAAGGAAGCTTTCTAAGATCTTACGCGCCAAAAGAGACAACGAGAA 1772
|||| || |||||||||||||||||||||||| | | | |||||||||||||
Sbjct 1857 GAGGAAACATTGCAAAAGGAAGCTTTCTAAGA-C--A------A---GAGACAACGAGAA 1904
Query 1773 CATTCCACAAGGCAAGCAACTCAATCTTGAATCAACGCTCTACGTGTCGAGATTTGTGTC 1832
||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1905 TATTCCACAAGGCACGCAACTCAATCTTGCATCAACGCTCTACGTGTCCAGATTTGTGTC 1964
Query 1833 CAAAGCTTTGCAAAATCGACGGAAAGATACAGCAGATTGTTCCA-CTTCTCTTGATATGT 1891
||||||||||||||||||||| |||||||||||||||||||||| || ||| ||||||||
Sbjct 1965 CAAAGCTTTGCAAAATCGACGAAAAGATACAGCAGATTGTTCCAGCT-CTCCTGATATGT 2023
Query 1892 CACCTCCGGTACCTCATAAACCAGCCGATCTCGAGTTTGCAAAGGATGAAGCATAG 1947
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2024 CACCTCCGGTACCTCATAAACCAGCCGATCTCGAGTTTGCAAAGGCTGAAGCATAG 2079
> AT2G46440.1 | Symbols: ATCNGC11, CNGC11 | cyclic nucleotide-gated
channels | chr2:19061861-19064881 FORWARD LENGTH=2340
Length=2340
Score = 1736 bits (940), Expect = 0.0
Identities = 1178/1289 (91%), Gaps = 32/1289 (2%)
Strand=Plus/Plus
Query 1 ATGAATCATCAGAGGAGTAAATTTGCTAGGAATTTGGGGAGTTC---TGTTGATGGAAAA 57
||||||| ||||||||| ||||||| |||| || | ||| | ||||||||||||
Sbjct 222 ATGAATCTTCAGAGGAGAAAATTTGTTAGG--CTT-GATAGTACGGGAGTTGATGGAAAA 278
Query 58 ATCAAAAGTGTTAGAGGAGGCTTGAAGAAGTTTTATC-AGAAGATGAAAACACT-GAAAA 115
| ||||||||||||||| ||||||||||| |||| | ||||||||||||||| | |||
Sbjct 279 TTGAAAAGTGTTAGAGGACGCTTGAAGAAGGTTTA-CGGGAAGATGAAAACACTCG-AAA 336
Query 116 ACTGGAGGAAGACTGTCTTGTTAGCTTGCGTGGTTGATTTGGCTATTGATCCTTTGTTTC 175
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 337 ACTGGAGGAAGACCGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGATCCTTTGTTTC 396
Query 176 TCTTTATCCCTTTGATTGATTCTAATAAATATTGCTTCACTTTCGACAAGAAACTTGCAG 235
| ||||||||||||||||||||| | | || |||||||||||||||||||| ||||| ||
Sbjct 397 TGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTTTCGACAAGACACTTGTAG 456
Query 236 TAGTAGTTTGTGTCATTCGTACTTTTAGTGACACATTCTATGTGATTCACATCATTT-TT 294
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 457 CAGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCACATCATTTATT 516
Query 295 CATCTTATAACCGAGATCATGGCTCCTCGTCCTGAAGCATCTTTTAGAGGCGAGATT-TC 353
||||||||||||||| ||| ||||||||| || |||||||||| |||||||||||| |
Sbjct 517 -ATCTTATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGCGAGATTGT- 574
Query 354 CGTGCATTCTAAGGCTACACGGAAAACACGTCACCTCTTTCAATTCATTGTTAACATTTT 413
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||| |
Sbjct 575 CGTGCATTCTAAGGCTACACTGAAAACACGTCTCCTCTTTCACTTCATTGTTGACATTAT 634
Query 414 CTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATTCCACGGTCTGCCTCGCT 473
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct 635 CTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCT 694
Query 474 AGTGTCAGAGAAAATACTGAAATGGATTATACTTTCTCAAT-TGTTACCAAGAATCATTC 532
|||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 695 GGTGTCAGAGAGAATACTGAAATGGATTATACTTAGTCAATATGT-ACCAAGAATCATTC 753
Query 533 GTATGTATCCGCTTTACAAAGATGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGT 592
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 754 GTATGTATCCGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGC 813
Query 593 GGATTGGAGCTGCTTTAAACCTT-TTCCTTTACATGCTGCACAGTTATGTGTTTGGGGCT 651
|| | ||||||||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 814 GGGTCGGAGCTGCTTTAAAC-TTCTTCCTTTACATGCTGCACAGTTATGTGTGTGGGGCT 872
Query 652 TTTTGGTACGTGAGTGCAGTAGAAAAGAAAAGCAAATGTTGGCGTGACGCGTGCGCTAGG 711
|||||||| ||||| || |||||| |||||||| ||||||||||| |||||| ||||||
Sbjct 873 TTTTGGTATTTGAGTTCAATAGAAAGGAAAAGCACATGTTGGCGTGCCGCGTGTGCTAGG 932
Query 712 ACATCCGACTGCGATCTCACG---A---ATCTGCTTTGTGGACGAGGTGGCAGAGACAAC 765
|||||||||||| |||||||| | ||||||||||| ||||| ||| || ||||||
Sbjct 933 ACATCCGACTGCAATCTCACGGTCACGGATCTGCTTTGTAAACGAGCTGGTAGTGACAAC 992
Query 766 AGTCGTTTCCTTAACACTTCATGCCCCTTAATCGACCCTGCCCAAATCACAAACTCCACA 825
| |||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 993 ATTCGTTTTCTCAACACCTCATGCCCATTAATCGACCCTGCCCAAATCACAAACTCCACA 1052
Query 826 GACTTCAACTTTGGTATGT-TCATTGATGCATTGAAGTCAGGGGTGGTAGAGGTGAAACC 884
|||||| |||||||||||| | |||||||| |||||||||||||| |||||||||||||
Sbjct 1053 GACTTCGACTTTGGTATGTAT-ATTGATGCGTTGAAGTCAGGGGTCCTAGAGGTGAAACC 1111
Query 885 AAGAG-ATTTTCCGAGGAAATTCCTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAGTG 943
|| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1112 AA-AGGATTTTCCCAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAGTG 1170
Query 944 CTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATTTGT-TTTGCTATCATC 1002
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1171 CTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATTT-TCTTTGCTATCATC 1229
Query 1003 ATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 ATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTG 1289
Query 1063 CAATCATCAACGACTAGAGTAGATGAAATGGAGGAGAAAAAGAGAGACACAGAAAAATGG 1122
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1290 CAATCATCTACGACTAGAGTAGATGAAATGGAAGAGAAAAAGAGAGACACAGAAAAATGG 1349
Query 1123 ATGTCCTATCGGGTGATACCACAGTATTTGAAGGAACGCATTAGGAGATTCGAAGATTAC 1182
||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1350 ATGTCCTATCGGGAGATACCAGAGTATTTGAAGGAACGCATTAGGAGATTTGAAGATTAC 1409
Query 1183 AAATGGCGA-GAAACCAAAGGCACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGA 1241
|||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 AAATGGAGAAGAA-CCAAAGGCACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGA 1468
Query 1242 CCTCAGACTCGAAACCAAACGCTATCTTT 1270
|||||||||||||||||||||||||||||
Sbjct 1469 CCTCAGACTCGAAACCAAACGCTATCTTT 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96435246945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5