BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315187
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 427 4e-119
AT1G62220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 412 1e-114
AT1G62080.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 401 2e-111
AT1G62000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 390 5e-108
AT1G62214.1 | Symbols: | unknown pseudogene | chr1:22987483-22... 108 6e-23
> AT1G62060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62220.1); Has
386 Blast hits to 125 proteins in 33 species: Archae - 6;
Bacteria - 295; Metazoa - 8; Fungi - 17; Plants - 46; Viruses
- 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:22941569-22942300
REVERSE LENGTH=732
Length=732
Score = 427 bits (231), Expect = 4e-119
Identities = 385/455 (85%), Gaps = 28/455 (6%)
Strand=Plus/Plus
Query 1 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTGTGCCATTGTCACC 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 54 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTGTGTGCCATTGTCACC 113
Query 61 GCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAACT 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 114 GCAAGGCAGGTCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAATCT 173
Query 121 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGG-CACAACTTACAGCAACT-CT- 177
|||| |||||||||||||||||||||||||||| ||| | | |||||||| | |
Sbjct 174 ACTAACAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTCTTA-CTTACAGCGGCAGCAG 232
Query 178 TACGTCTCTAGCTATGCTAGAGCTTCTAATGGTCCCAAAGGTCCAGACGCC-GATGCAGC 236
| |||||||||| |||||| |||| ||| |||||||||||||| ||| | |||| |
Sbjct 233 T--GTCTCTAGCTCTGCTAGTGCTTTTAACAATCCCAAAGGTCCAGGGGCCAG-TGCATC 289
Query 237 CGAATA-TGGCT-CAACATA-TACCAAT-GGACAAGTCTAT-GCCAAGGGTCGCAAGGCA 291
|||| | ||||| || || | ||||| | ||||||||| || ||||||||||||||||||
Sbjct 290 CGAA-AGTGGCTACA-CA-AGTACCA-TCGGACAAGTC-ATTGCCAAGGGTCGCAAGGCA 344
Query 292 A-ACATTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCTGCAGCGAATCG 350
| | |||||||| ||||| |||| |||||||| || |||| |||||||| || |||
Sbjct 345 AGAG-TTTCTTCTGCAAGTGCTTCTGCCGCTACAGGTGAGGCTGCAGCTGCAGTGACTCG 403
Query 351 AAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCG-ACTCAAGGGTGAAGGGCA 409
||||||||||||||||||||||| ||| |||| |||| | ||||||||||||||
Sbjct 404 CAAAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCGCA-TCAAGGGTGAAGGG-- 460
Query 410 GTTCCTCTGGGAAGAAGAAG--GG-CTACAAAGGA 441
|||||||| |||||||||| || | ||||||||
Sbjct 461 -TTCCTCTGAGAAGAAGAAGAAGGACCACAAAGGA 494
> AT1G62220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62000.1); Has
131 Blast hits to 122 proteins in 40 species: Archae - 0;
Bacteria - 73; Metazoa - 10; Fungi - 6; Plants - 37; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:22988196-22988844
FORWARD LENGTH=649
Length=649
Score = 412 bits (223), Expect = 1e-114
Identities = 370/439 (84%), Gaps = 17/439 (4%)
Strand=Plus/Plus
Query 1 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTGTGCCATTGTCACC 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 57 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGCGTTTTGTGTGCCATTGTCACC 116
Query 61 GCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAACT 120
|||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 117 GCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAAGT 176
Query 121 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGGCACAACTTACAGCAACTCTT-A 179
||||||||||||||||||||||||||||||||| ||| | |||| ||||| | | |
Sbjct 177 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTATTACTTCCAGCAG-TAGTGA 235
Query 180 CGTCTCTAGCTATGCTAGAGCTT-CTAATGGTCCCAAAGGTCCAGACGCCGATGCAGCCG 238
|||| ||||| ||||| | || | || |||||||||||||||||| ||||| ||
Sbjct 236 TGTCTATAGCTCTGCTACTGGTTTC-AACAATCCCAAAGGTCCAGACGCTAATGCATACG 294
Query 239 AATATGGCT-CAACATA-TACCAATGGACAAGTCTAT-GCCAAGGGTCGCAAGGCAA-AC 294
|| |||||| || || | ||||| ||||||||| || ||||||||||||||||||| |
Sbjct 295 AAAATGGCTACA-CA-AGTACCAGCGGACAAGTC-ATTGCCAAGGGTCGCAAGGCAAGAG 351
Query 295 ATTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCTGCAGCGAATCGAAAA 354
|||||||| ||||| ||||| |||| ||| || ||| ||||||||| || ||| |||
Sbjct 352 -TTTCTTCTGCAAGTGCTTCTACCGCTAAAGGTGATGCTAAAGCTGCAGTGACTCGCAAA 410
Query 355 GCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCG-ACTCAAGGGTGAAGGGCAGTTC 413
|||||||||||||| ||||| ||| |||| || | | |||||||||||||| |||
Sbjct 411 GCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGGCA-TCAAGGGTGAAGGG---TTC 466
Query 414 CTCTGGGAAGAAGAAGGGC 432
||||| |||||||||||||
Sbjct 467 CTCTGAGAAGAAGAAGGGC 485
> AT1G62080.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62000.1);
Has 118 Blast hits to 112 proteins in 34 species: Archae -
0; Bacteria - 43; Metazoa - 10; Fungi - 2; Plants - 36; Viruses
- 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr1:22946242-22946949
REVERSE LENGTH=708
Length=708
Score = 401 bits (217), Expect = 2e-111
Identities = 368/438 (84%), Gaps = 21/438 (5%)
Strand=Plus/Plus
Query 1 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTGTGCCATTGTCACC 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 47 ATGAATGCCACAAAGTTTCTTGTGCTTCTCGTGATTGGCGTTTTGTGTGCCATTGTCACC 106
Query 61 GCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAACT 120
|||||||||| | |||| |||||| ||||||||||||||| ||||||||||||||||
Sbjct 107 GCAAGGCAGGTCAAAGATTTGTCCACAGAGACCAAATTAGGGGCCTCTCTTCCAAAAACG 166
Query 121 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTA-TGGCACAACTTACAGCAACT-CTT 178
|||||||||||||||||||||||||||||||| | |||| |||||| ||||| | |
Sbjct 167 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCA-ACTGGCTCAACTTTCAGCAGCAGC-- 223
Query 179 ACGTCTC-T-AGCTATGCTAGA-GCTTCTAATGGTCCCAAAGGTCCAGACGCCGATGCAG 235
| || || | |||||||||| | | || ||| ||||||||| |||| ||| |||||
Sbjct 224 A-GTGTCGTTAGCTATGCTA-ATGGTTTTAACAATCCCAAAGGCCCAGGGGCCAATGCAT 281
Query 236 CCGAATA-TGGCTCAACATATACCAATGGACAAGTCTA-TGCCAAGGGTCGCAAGGCAA- 292
|||| | |||||| |||| ||||| ||||||||| | ||||||||||||||||||||
Sbjct 282 TCGAA-AGTGGCTCCACATTTACCAGCGGACAAGTC-ACTGCCAAGGGTCGCAAGGCAAG 339
Query 293 ACATTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCTGCAGCGAATCGAA 352
| |||||||| ||||| ||||| |||||||| || |||| |||||||| || ||| |
Sbjct 340 AG-TTTCTTCTGCAAGTGCTTCTACCGCTACAGGTGAGGCTGCAGCTGCAGTGACTCGCA 398
Query 353 AAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCG-ACTCAAGGGTGAAGGGCAGT 411
|||||||||||||||||||||| ||| |||| |||| | |||||||||||||| |
Sbjct 399 AAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCGCA-TCAAGGGTGAAGGG---T 454
Query 412 TCCTCTGGGAAGAAGAAG 429
||||||| ||||||||||
Sbjct 455 TCCTCTGAGAAGAAGAAG 472
> AT1G62000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62080.1); Has
163 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria
- 4; Metazoa - 109; Fungi - 6; Plants - 37; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:22913441-22914146
FORWARD LENGTH=706
Length=706
Score = 390 bits (211), Expect = 5e-108
Identities = 371/444 (84%), Gaps = 27/444 (6%)
Strand=Plus/Plus
Query 1 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTGTGCCATTGTCACC 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 51 ATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTGTGTGCCATTGTCACC 110
Query 61 GCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAAAAACT 120
|||||||||| | |||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 111 GCAAGGCAGGTCAAAGATTTGTCCACGGAGACCAAATTAGGGGCCTCTCTTCCAAAAACT 170
Query 121 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTA-TGGCACAACTTACAGCAACT-CTT 178
|||||||||||||||||||||||||||||||| | ||||||||||||||||| | |
Sbjct 171 ACTACCAAAGGCATTGGAGCTCAGCTTTCTGCA-ACTGGCACAACTTACAGCACCAGC-- 227
Query 179 ACGTCTC-T-AGCTATGCTAGA-GCTTCTAATGGTCCCAAAGGTCCAGACGCCGATGCAG 235
| || || | |||||||||| | | || ||| |||||||||||||| ||| || ||
Sbjct 228 A-GTGTCGTTAGCTATGCTA-ATGGTTTTAACAATCCCAAAGGTCCAGGGGCCAATTCAT 285
Query 236 CCGAATA-TGGCTCAACATAT--ACCAATGGACAAGTCTA-TGCCAAGGGTCGCAAGGCA 291
|||| | || | ||||| || |||| ||||||||| | |||||||||||||||||||
Sbjct 286 TCGAA-AGTG-C-CAACACATTTACCAGCGGACAAGTC-ACTGCCAAGGGTCGCAAGGCA 341
Query 292 A-ACATTTCTTCTAAAAGTGGTTCTAAAGCT-ACAGGAGAAGCTGAAGCTGCAGCGAATC 349
| | ||||||||| ||||| |||| ||| | ||| || |||| |||||||| || ||
Sbjct 342 AGAG-TTTCTTCTACAAGTGCTTCTGCCGCTGA-AGGCGATGCTGCAGCTGCAGTGACTC 399
Query 350 GAAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCG-ACTCAAGGGTGAAGGGC 408
| ||||||||||||||||||||||| ||| |||| |||| | ||||||||||||||
Sbjct 400 GCAAAGCTGCTGCTGCACGTGCAAACGGTAAGGTAGCTTCCGCA-TCAAGGGTGAAGGG- 457
Query 409 AGTTCCTCTGGGAAGAAGAAGGGC 432
|||||||| |||||||||||||
Sbjct 458 --TTCCTCTGAGAAGAAGAAGGGC 479
> AT1G62214.1 | Symbols: | unknown pseudogene | chr1:22987483-22987938
REVERSE LENGTH=363
Length=363
Score = 108 bits (58), Expect = 6e-23
Identities = 70/76 (92%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 56 TCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAA 115
|||||| ||||||| |||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 63 TCACCGTGAGGCAGGTCGAAGATGTGTCCAAGGAGACCAAATTAGGAACCTCTCTTCCAA 122
Query 116 AAACTACTACCAAAGG 131
||||||||||||||||
Sbjct 123 AAACTACTACCAAAGG 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5