BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315190
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61960.1 | Symbols: | Mitochondrial transcription terminati... 1408 0.0
AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 721 0.0
AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 636 0.0
AT1G62490.1 | Symbols: | Mitochondrial transcription terminati... 396 3e-109
AT1G62120.1 | Symbols: | Mitochondrial transcription terminati... 303 2e-81
AT1G61990.1 | Symbols: | Mitochondrial transcription terminati... 289 6e-77
AT1G62010.1 | Symbols: | Mitochondrial transcription terminati... 283 3e-75
AT1G62085.1 | Symbols: | Mitochondrial transcription terminati... 250 3e-65
AT1G61980.1 | Symbols: | Mitochondrial transcription terminati... 243 5e-63
> AT1G61960.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22902150-22903837 FORWARD
LENGTH=1688
Length=1688
Score = 1408 bits (762), Expect = 0.0
Identities = 918/993 (92%), Gaps = 12/993 (1%)
Strand=Plus/Plus
Query 355 TCCAGAGGAGCTTCAAGCTCTGAGCTTACTGAGATTGTTTCTACAGTTCCTAAGATCTTG 414
|||||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||
Sbjct 474 TCCAGAGGAGCTTCAAGCTCTGAGCTCACTCAGATTGTTTCTACTGTTCCTAAAATCTTG 533
Query 415 GGAAAGAGAGGGCACAAATCTATATCTGTATACTATGATTTCGTCAAAGACATCATAGAA 474
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 534 GGGAAGAGAGGGCACAAATCTATAACTGTATACTATGATTTCGTCAAAGACATTATAGAA 593
Query 475 GCTGATAAGAGTTCTAGTTACGAAAAACTATGCCATTCTTTTCCACAGGGTAACAAGGAA 534
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 594 GCTGATAAGAGTTCTAGTTACGAAAAGTTATGTCATTCTTTTCCACAGGGTAACAA-GAA 652
Query 535 -AACAAGATCAGAAATATCTCTGTTTTGAGAGAATTGGGTGTGGCTCAGCGTTTGTTATT 593
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GAATAAGATCAGAAATATCTCTGTTTTGAGAGAATTGGGTGTGGCTCAGCGTTTGTTATT 712
Query 594 CCCCTTGCTCATCTCTGATAGCCAACCTGTTTGTGGGAAAGAAAGATTTGAAGAATCACT 653
||| ||||||||||| ||| |||||||||| ||||| |||||||||||||||||||| ||
Sbjct 713 CCCTTTGCTCATCTCAGATGGCCAACCTGTCTGTGGTAAAGAAAGATTTGAAGAATCTCT 772
Query 654 CAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAGACCT-CAAAGTTTGTTGAAGCTCTGC 712
|||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 773 CAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAGAC-TACAAAGTTCGTTGAAGCTCTGC 831
Query 713 GCGTTATTTACAGAATGAGCGACAAAACAATAGAAGAAAAAGTCAATGTTTACAAAAGGT 772
| ||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 832 GAGTTATTTACCGTATGAGTGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAAGGT 891
Query 773 TAGGCTTTGGTGTGGCTGATGTATGGGGAATCTTCATGAAGTGGCCTTCTTTTTTGTCAT 832
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 892 TAGGCTTTGGTGTGGCTGATGTATGGGCAATCTTCAAGAAGTGGCCTTCTTTTTTGTCAT 951
Query 833 ACTCAGAGAAGAAGATAACTCATACGTTTGAAACCCTTATGAGTTGCGGTCTTCTCAAAC 892
||||||||||||||||||||||||| ||||||||||||| |||||| ||||| || ||||
Sbjct 952 ACTCAGAGAAGAAGATAACTCATACTTTTGAAACCCTTAAGAGTTGTGGTCTGCTTAAAC 1011
Query 893 ACGAGGTCCTGTCATTGATAAAGAAGCATCCAAAGTGCATTTGTTCTTCAGAGCAGAAGA 952
|||||||||||| |||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 1012 ACGAGGTCCTGTTATTGTTGAAGAAGCATCCAAAATGCATTTGTTCTTCAGAGCAGAAGA 1071
Query 953 TAGTAAACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCAGCAGAGACGAGTTTGCGATG 1011
| || |||||||| |||| ||| || ||||||||||||||||||||| ||||||||||||
Sbjct 1072 TTGTGAACTCCATAGAAACATTCTT-AGGCCTAGGATTCAGCAGAGATGAGTTTGCGATG 1130
Query 1012 ATGATCAAGCGTTATCCTCAATGCATTGACTATACTGCCGAGACAGTGAAGAAGAAAACT 1071
||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1131 ATGGTCAAGCGATATCCTCAGTGCATTGACTATACTGCTGAGACAGTGAAGAAGAAAACT 1190
Query 1072 GATTTTATTGTGAGGAAGATGAATTGGCCACTAGAGGGTTTGGTTTTGATCCCTCAGATA 1131
|| |||||||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 1191 GAGTTTATTGTGAAGAATATGAATTGGCCACTAGAGGCTTTGGTTTCGATCCCTCAGGTA 1250
Query 1132 TTTGGATACAGCCTGGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAACTCTCATG 1191
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1251 TTTGGATACAGCCTGGAGAAGAGAACTGTCCCAAGGTGTAATGTAATCAAAACTCTCATC 1310
Query 1192 TCAAAAGGATTGCTT---GA---AAGTGAAACCCCTCCAATGTCATCTATTTTGACAAGT 1245
||||||||| || | || ||||||| ||||||||||||||||| |||| ||||||
Sbjct 1311 TCAAAAGGACTGATGAAAGACGGAAGTGAAGCCCCTCCAATGTCATCTGTTTTAACAAGT 1370
Query 1246 ACCGATCAGGCATTTTTGAGGAGGTATGTGATGAAGTACGACAAGCTGGTGCCTGAGTTG 1305
||||||||||| ||||| |||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1371 ACCGATCAGGCGTTTTTAAGGAGGTATGTGATGAAGCACGACAAGTTGGCACCTGAGTTG 1430
Query 1306 ATGGCTATCTTCACTGGAGAAAATGGGAAGTGA 1338
|||||||||||||||||||||||||||||||||
Sbjct 1431 ATGGCTATCTTCACTGGAGAAAATGGGAAGTGA 1463
Score = 468 bits (253), Expect = 7e-131
Identities = 326/361 (90%), Gaps = 6/361 (2%)
Strand=Plus/Plus
Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTGCCTAATTTC 60
|||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 90 ATGTATGCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTACAGAAATTGTCTAATTTC 149
Query 61 AGAGTTTCAGTGCAAACCGCATCTTCTTTGTCAAATTCGTTCTCTTTTACTAGTGTTGCT 120
||||||||||| |||| || |||| ||||||| ||||| ||||||||| |||||||||||
Sbjct 150 AGAGTTTCAGTTCAAAACGGATCTGCTTTGTCCAATTCCTTCTCTTTTGCTAGTGTTGCT 209
Query 121 GATGCGAGCCTTAGAGATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTTGA 179
||||||| ||||| |||| | |||||||| ||||||||||| | |||||||||| |||||
Sbjct 210 GATGCGACCCTTATAGATAGCCTTAAAGGTAACAACTTTAC-AGTCTCTTACCTAGTTGA 268
Query 180 TTCATTGGGTTTAACCACAAAACTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAGGA 239
||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||
Sbjct 269 TTCATTGGGTTTAACCACAAAGCTCGCAGAATCGATCTCCAAGAAAGTAAGCTTCGAGGA 328
Query 240 CAAGGA-AAATCCGGATTCTGTTGTGAGTCTTCTTACAAGTTATGGCTTCACAAAGTCTC 298
| ||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 329 GA-GGAGAAATCCGGATTCTGTTCTGAGTCTTCTTACAAGTTATGGGTTCACAAAGTCTC 387
Query 299 AGATTTCAAGTATCATTACGGATC-ACCCACGATTGCTTATATTACATGCTGACAAATCC 357
||||||||||||||||||| ||| |||||||||||||| |||| ||||||| ||||||
Sbjct 388 AGATTTCAAGTATCATTACT-ATCTACCCACGATTGCTTGCATTAGATGCTGAGAAATCC 446
Query 358 A 358
|
Sbjct 447 A 447
> AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970029-22971764 REVERSE
LENGTH=1736
Length=1736
Score = 721 bits (390), Expect = 0.0
Identities = 1011/1298 (78%), Gaps = 93/1298 (7%)
Strand=Plus/Plus
Query 87 TTTGTCAAATTCGTTCTC-T-T-TTACTAGTGTTGCTGATGCGAGCCTTAGAGATGGTCT 143
||| || ||||| ||||| | | || ||| || |||||||| |||| |||||||| |||
Sbjct 277 TTTTTCCAATTCATTCTCTTCTGTTGCTACTGCTGCTGATGTGAGCTTTAGAGATAGTCG 336
Query 144 TAAAGGGAACAACTTTACCATCTCTTACCTCGTTGATTCATTGGGTTTAACCACAAAACT 203
||||| ||||||||||| ||||||||||||||||||||||||||||| | |||| ||
Sbjct 337 AAAAGGTAACAACTTTACTGTCTCTTACCTCGTTGATTCATTGGGTTTAGCTTCAAAGCT 396
Query 204 CGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAGGACAAGGAAAATCCGGATTCTGTTGT 263
||||||||||||||| | ||||||||| ||||| |||||| ||||| ||| | ||| |
Sbjct 397 CGCAGAATCGATCTCGATGAAAGTCAGTTTCGAGAACAAGGGCAATCCTGATACAGTTCT 456
Query 264 GAGTCTTCTTACAAGTTATG-GCTTCACAAAGTCTCAGATTTCAAGTATCATTACGGATC 322
|| |||||||| |||| ||| | |||||| | |||||||| || || |||||| |||||
Sbjct 457 GAATCTTCTTAGAAGTCATGAG-TTCACAGATTCTCAGATCTCCAGCATCATTTCGGATT 515
Query 323 ACCCA-CGATTGCTTATATTACATGCTGACAAATCCAGA-GG----A-GCTTCA----A- 370
| ||| | ||||||| || | ||||||| |||| || || | ||||| |
Sbjct 516 ATCCAAC-ATTGCTTGTAGCAGATGCTGA-AAATTCACTTGGTCCCAAGCTTCTGTTGAT 573
Query 371 GC--TCT-GAG---CTT-A--CT--GAGAT---TG---TT-T--CTACAGTTCCTAAGAT 410
|| ||| ||| ||| | || ||| | || || | ||| ||||||||| ||
Sbjct 574 GCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTTCTAAAGTTCCTAAAAT 633
Query 411 CTTGGGAAAGAGAGGGCACAAATCTATAT-CTGTATACTATGATTTCGTCAAAGACATCA 469
||| |||| || |||| ||||| ||| | | |||||||||| |||||||||| || |
Sbjct 634 CTTAGGAATGAAAGGGGACAAAAGTATCGGCAG-ATACTATGATATCGTCAAAGAGATTA 692
Query 470 TAGAAGCTGATAAGAGTTCTA-GTTACGAAAAACTATGCCATTCTTTTCCACAGGGTAAC 528
||||||| |||||||| || | ||| |||||| || || |||||||| || ||||||
Sbjct 693 TAGAAGCGGATAAGAGCTCCAAGTT-CGAAAAGCTGTGTCATTCTTTGCCTGAGGGTAGT 751
Query 529 AAGGA--A-AACAAGATCAGAAATATCTCTG-TTTTGAGAGAATTGGGTGTGGCTCAGCG 584
||| | | || || ||||| ||| | | || |||||||||| ||||||||| |||| |
Sbjct 752 AAGCAGGAGAATAAAATCAGGAATGTAT-TGGTTTTGAGAGATTTGGGTGTGCCTCAAAG 810
Query 585 TTTGTTATTCCCCTTGCTCATCTCTGAT-AGCCAAC-CTGTTTGTGGGAAAGAAA-GATT 641
||||||||| | |||||| ||||| || | ||| ||| | |||| ||||||| | ||
Sbjct 811 GTTGTTATTCTCATTGCTCTTCTCTAATCA-CCATGTCTGCT-GTGGAAAAGAAAAG-TT 867
Query 642 TGAAGAATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAG-ACCTC-AAAGTTT 699
||||||||||||||| |||||||||| ||||||||||||||| | || || |||||||
Sbjct 868 TGAAGAATCACTCAACAAGGTTGTTGGGATGGGTTTTGATCCC-ACCAC-TCCAAAGTTT 925
Query 700 GTTGAAGCTCTGCGCGTTATTTACAGAATGAGCGACAAAACAATAGAAGAAAAAGTCAAT 759
|| |||||| | || || ||||| || |||||||||||| | |||||||||| |||||
Sbjct 926 GTGGAAGCTTTATGCATTGTTTACGGATTGAGCGACAAAAGACTAGAAGAAAACTTCAAT 985
Query 760 GTTTACAAAAGGTTAGGCTTTGGTGTGG-CTGATGTATGGGGAA-TCTTCATGAAGTGGC 817
|| ||||| || || ||||| ||| | |||||||||| || | |||| |||||| |
Sbjct 986 GTCTACAAGAGATTTGGCTTAACTGTAAAC-GATGTATGGG-AACTTTTCAAGAAGTGCC 1043
Query 818 CTTCTTTT-TTGTCATACTCAGAGAAGAAGATAACTCATACGTTTGAAACCCTTAT-GAG 875
|| | ||| ||| |||||| ||||| | ||||| ||| || |||||| || ||| |||
Sbjct 1044 CTGCCTTTCTTGG-ATACTCTGAGAATAGGATAATTCAGACATTTGAAGCC-TTAAAGAG 1101
Query 876 TTGCGGTCT-TCTCAAACACGAGGTCCTGTCATTGATAAAGAAGCATCCAA-AGTGCATT 933
|| ||||| | | || | ||||| ||||| || | |||||| ||||| | ||| ||
Sbjct 1102 GTGTGGTCTGTG-CGAAGATGAGGTATTGTCAGTGTTCAAGAAGAATCCACTA-TGC-TT 1158
Query 934 T-GTTCTTCAGAGCAGAAGATAGTAAACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCA 991
|| ||||||||||| ||||| | |||||||| |||| |||| | |||| |||||||||
Sbjct 1159 ACGTGCTTCAGAGCAGCAGATATTGAACTCCATGGAAACATTTAT-AGGCTTAGGATTCA 1217
Query 992 GCAGAGACGAGTTTG-CGATGATGATCAAGCGT-TATCCTCAATGCATTG-ACTATACTG 1048
||||||| ||||||| | |||||| ||||| | | |||||| ||||||| | ||| |||
Sbjct 1218 GCAGAGATGAGTTTGTC-ATGATGGTCAAGTGCCT-TCCTCAGTGCATTGGA-TATTCTG 1274
Query 1049 CCGAGACAGTGAAGAAGAAAACTGATTTTATTGTGAGGAAGATGAATTGGCCACT-AGAG 1107
| |||| ||||||||||| ||||| ||| | |||| |||||||||||||||||| | ||
Sbjct 1275 CAGAGATGGTGAAGAAGAAGACTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTTA-AG 1333
Query 1108 GGT--TTGGTTTTGATCCCTCAGATATTTGGATACAGCCTGGAGAAGAGGACTGTCCCAA 1165
| | || ||| | |||||||| || ||||||| ||| |||||||||||||||||||||
Sbjct 1334 G-TCATTACTTT-GTTCCCTCAGGTACTTGGATATAGCATGGAGAAGAGGACTGTCCCAA 1391
Query 1166 GGTGTAATGTAATCAAAACTCTCATGTCAAAAGGATTGCTTGAAAGTGAAAC-CCCTCCA 1224
||||||||||||||||| |||||||||| ||||||||||||| ||| ||| | |||||||
Sbjct 1392 GGTGTAATGTAATCAAAGCTCTCATGTCCAAAGGATTGCTTGGAAGCGAA-CTCCCTCCA 1450
Query 1225 ATGTCATCTATTTTGACAAGTACCGATCAGGCATTTTTGAGGAGGTATGTGAT-GA--A- 1280
||| | ||| ||||| || ||||||||||| | || || | ||||||||| | || |
Sbjct 1451 ATGGCGTCTGTTTTGGCATGTACCGATCAGACCTTCTTAAAAAGGTATGTGGTTGAGCAT 1510
Query 1281 GTACGACAAGCTGGTGCCTGAGTTGATGGCTATCTTCA 1318
| | || |||||||||| |||||||||| |||||||||
Sbjct 1511 G-ATGAAAAGCTGGTGCTTGAGTTGATGTCTATCTTCA 1547
> AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22957876-22959711 REVERSE
LENGTH=1836
Length=1836
Score = 636 bits (344), Expect = 0.0
Identities = 789/996 (79%), Gaps = 62/996 (6%)
Strand=Plus/Plus
Query 358 AGAGGAGCTTCAAGCTCTGAGCTTACTGAGATTGTTTCTACAGTTCCTAAGATCTTGGGA 417
||||||||||||||| ||||||| ||| |||||||||||||||||||||| || ||||||
Sbjct 617 AGAGGAGCTTCAAGCCCTGAGCTCACTCAGATTGTTTCTACAGTTCCTAAAATATTGGGA 676
Query 418 A--AGAGAGGGCACAAATCTATA-TCTGTATACTATGATTTCGTCAAAGACATCATAGAA 474
| | |||||| | || ||| || | | ||||||||||||||||||||| || ||||||
Sbjct 677 ATGAAAGAGGG-A-AAGTCTCTAGGCAG-ATACTATGATTTCGTCAAAGAGATTATAGAA 733
Query 475 GCTGATAAGAGTT-CTAGTTACGAAAAACTATGCCATTCTTTTCCACAGGGTAACA---A 530
|| |||||||||| | || ||||||| | || || |||| ||| ||| ||| | |
Sbjct 734 GCAGATAAGAGTTCCAAG-TACGAAACTTTGTGTCAACCTTTGCCAGAGGCTAATAGGCA 792
Query 531 GGAAAACAAGATCAGAAATATCTCTGTT-TTGAGAGAATTGGGTGTGGCTCAG-CGTTTG 588
|| || || ||||||||| | || ||| || ||||| ||||||||| ||||| | |||
Sbjct 793 GGGTAATAAAATCAGAAATGTTTCGGTTCTT-AGAGACTTGGGTGTGCCTCAGAAG-TTG 850
Query 589 TTATTCCCCTTGCTCATCTCTGATAG-CCAACCTGTTTGTGGGAAAGAAAGA-TTTGAAG 646
|||||| ||||||||||||||||| | ||||||||||||||| ||||||| | |||||||
Sbjct 851 TTATTCTCCTTGCTCATCTCTGAT-GCCCAACCTGTTTGTGGAAAAGAAA-ATTTTGAAG 908
Query 647 AATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAG-ACCTCAAAGTTTGTTGAA 705
||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 909 AATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCA-ACCACCTCAAAGTTTGTCCAA 967
Query 706 GCTCTGCGCGTTATTTACAGAATGAGCGACAAAACAATAGAAGAAAAAGTCAATGTTTAC 765
||||| | | | |||||||| | | |||||||||||||||||||| ||| ||||| ||
Sbjct 968 GCTCTTAGGGCTGTTTACAGATTCACCGACAAAACAATAGAAGAAAGAGTTAATGTGTAT 1027
Query 766 AAAAGGTTAGGCTTTGGTGTGGCTGATGTATGGGGAATCTTCATGAAGTGGCCTT-CTTT 824
||| |||| ||||||| ||||| |||||||||| ||| |||| ||| || |||| ||||
Sbjct 1028 AAAGGGTTCGGCTTTGCTGTGGAAGATGTATGGGCAATGTTCAAGAAATGTCCTTACTTT 1087
Query 825 TTTGTCATACT-CAGAGAAGAAGATAACTCATACGTTTGAAACCCTTATGA-GTTGCGGT 882
|| | ||| | | ||||||||||| ||| || |||||||||| | || || | ||
Sbjct 1088 TT-GA-ATAGTTCGGAGAAGAAGATTGGTCAGACAATTGAAACCCTGAAGAAGT-GTGGA 1144
Query 883 CTTCTCAAACACGAGGTCCTGTCATTGAT-AAAGAAGCATCCAAAGTGCATTTGTTCTTC 941
|| ||| || |||||||| | ||| || | ||| ||| |||| |||||||| || ||||
Sbjct 1145 CTACTCGAAGACGAGGTCATCTCAGTGTTGAAA-AAGTATCCGCAGTGCATTGGTACTTC 1203
Query 942 AGAGCAGAAGATAGTAAACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCAGCAGAGACG 1000
||||||||||||| | ||||||||||||| |||| | ||||||||| ||||||||||| |
Sbjct 1204 AGAGCAGAAGATATTGAACTCCATTGAAATATTTCT-AGGCCTAGGCTTCAGCAGAGATG 1262
Query 1001 AGTTTGCGATGATGATCAAGCG-TTATCCTCAATG-CATTGACTATA-CTGCCGAGACAG 1057
|||| | ||| | ||||| || |||||| || | || | | || |||| ||||| |
Sbjct 1263 AGTTCATAACAATGGTTAAGCGCTT-TCCTCAGTGTC-TT-ATTTTATCTGCAGAGACGG 1319
Query 1058 TGAAGAAGAAAACTGATTTTATTGTGAGGAAGATGAATTGGCCACTAGAGGGTT-TGGTT 1116
|||||||||| | ||| ||| | |||| |||||||||||||||||| || || | |||||
Sbjct 1320 TGAAGAAGAAGATTGAGTTTGTGGTGAAGAAGATGAATTGGCCACT-GAAGGATGTGGTT 1378
Query 1117 TTGA-TCCCT-CAGATATTTGGATACAGCCTGGAGAAGAGGACTGTCCCAAGGTGTAATG 1174
| | ||| | | | || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1379 TCAAATCC-TACGG-TACTTGGATACAACCTGGAGAAGAGGACTGTCCCAAGGTGTAATG 1436
Query 1175 TAATCAAAACTCTCATGTCAAAAGGA-TTGCTTG-A-A-A--G----TGAAAC-CCCTCC 1223
| || || |||||||||||||| || || || | | | | | |||| | ||||||
Sbjct 1437 TTATTGAAGCTCTCATGTCAAAAAGACTT-CTCGGAGACACAGGAAGTGAA-CTCCCTCC 1494
Query 1224 AATGTCATCTATTTTGACAAGTACCGATCAGGCATTTTTGAGGAGGTATGTGATGAAGTA 1283
|||||| ||| ||||| | |||| ||| || || || | |||||||||| ||| |
Sbjct 1495 AATGTCGTCTGTTTTGGTATGTACTGATGAGTTGTTCTTAAAAAGGTATGTGAGGAACCA 1554
Query 1284 CG---ACAAG---CTGGTGCCTGAGTTGATGGCTAT 1313
| ||||| ||||||| |||||||||| ||||
Sbjct 1555 TGGTGACAAGGAGCTGGTGCTTGAGTTGATGACTAT 1590
Score = 292 bits (158), Expect = 4e-78
Identities = 295/361 (82%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTGCCTAATTTC 60
||||||||| |||||| |||||||||||||||||| |||||| |||||| || | ||||
Sbjct 230 ATGTATTCTGTGATACTCCATGGAAGAAGGTTGGTACAGTTGCAGAAATGGCGTCATTTG 289
Query 61 AGAGTT-TCAGTGCAAACCGCATCTTCTTTGTCAAATTCGT-TCTCTTTTACTAGTGTTG 118
||| || | ||||||| | ||| |||| || ||||| | | |||| | |||||| |
Sbjct 290 AGATTTGTT-GTGCAAAATGGATCAGCTTTTTCTAATTCCTAT-TCTTCTGCTAGTGCTA 347
Query 119 CTGATGCGAGCCTTA-GAGATGGTCTTAAAGGGAACAACTTTACCATCTCTTACCTCGTT 177
||||| |||| | | ||||||||| |||| ||| |||||||| ||||||||||||||
Sbjct 348 CTGATTTGAGC-TCAAGAGATGGTCGAAAAGTGAAGAACTTTACTGTCTCTTACCTCGTT 406
Query 178 GATTCATTGGGTTTAACCACAAAACTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAG 237
||||||||||||||| | ||||||||||| ||||| ||||||||||||||||| ||| |
Sbjct 407 GATTCATTGGGTTTAGCTACAAAACTCGCTGAATCAATCTCAAAGAAAGTCAGTTTCGTG 466
Query 238 GACAAGGAAAATCCGGATTCT-GTTGTGAGTCTTCTTACAAGTTATGGCTTCACAAAGTC 296
|||||| ||||| |||| | ||| |||||||| ||| ||||||||| |||||||| ||
Sbjct 467 AACAAGGGCAATCCTGATT-TAGTTCTGAGTCTTTTTAGAAGTTATGGGTTCACAAATTC 525
Query 297 TCAGATTTCAAGTATCATTACGGATCACCC-ACGATTGCTTATATTACATGCTGACAAAT 355
|||||| || || |||||||||||| | || | |||||||| || || ||||||| ||||
Sbjct 526 TCAGATCTCCAGCATCATTACGGATTATCCTA-GATTGCTTCTAATAGATGCTGAGAAAT 584
Query 356 C 356
|
Sbjct 585 C 585
> AT1G62490.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:23130405-23131533 REVERSE
LENGTH=1005
Length=1005
Score = 396 bits (214), Expect = 3e-109
Identities = 414/506 (82%), Gaps = 31/506 (6%)
Strand=Plus/Plus
Query 394 TCTACAGTTCCTAAGA-TCTTGGGAAAGAGAGGGCACAAATCTAT-ATCTGTATACTATG 451
||| || ||||||| | |||||||||| |||||||||||| || | | || |||||||||
Sbjct 440 TCT-CAATTCCTAA-ACTCTTGGGAAAAAGAGGGCACAAAACTCTCAGCT-TATACTATG 496
Query 452 ATTTCGTCAAAGACA-TCATAGAAGCTGATAAGAGTTCT-AGTTACGAAAAACTATGCCA 509
||||||| ||||| | | ||||||| |||||||||||| || || |||| |||| ||
Sbjct 497 ATTTCGTTAAAGAGAGT-TTAGAAGCAGATAAGAGTTCTAAG-TATGAAACTTTATGTCA 554
Query 510 TTCTTTTCCACAGGGTAA-CAAGGAAAACAAGATCAGAAATATCTCTGTTTTGAGAGAAT 568
||||||||||||||||| | ||| ||||||| |||||| | || ||||| |||||||
Sbjct 555 GTCTTTTCCACAGGGTAATC-TGGAGAACAAGAAGAGAAATGTATCGGTTTTAAGAGAAT 613
Query 569 TGGGTGTGGCTCAGC--GTTTGTTATTCCCCTTGCTCATCTCTGATAGCCAACCTGTTTG 626
|||| || |||| | | ||||||||||||||||| || || | | | |||||||| ||
Sbjct 614 TGGGAATGCCTCA-CAAG-TTGTTATTCCCCTTGCTTATATCCGTTGGTCAACCTGTATG 671
Query 627 TGGGAAAGAAAGATTTGAAGA-ATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCGG 685
||| ||||| |||||| || | || ||||||||||| |||||||||||||||||||| |
Sbjct 672 TGGAAAAGATAGATTT-AATACGTCTCTCAAGAAGGTAGTTGAGATGGGTTTTGATCC-G 729
Query 686 A-GACCTCAAAGTTTGTTGAAGCTCTGCGCGTTAT-TTACAG-AATGAGCGACAAAACAA 742
| ||| |||||||||| ||||||| | || ||| |||| | ||||| |||||||||||
Sbjct 730 ACCACCGCAAAGTTTGTCAAAGCTCTCCACG-TATCTTAC-GAAATGAACGACAAAACAA 787
Query 743 TAGAAGAAAAAGTCAATGTTTACAAAAGGTTAGGCTTTGGTGTGGCTGATGTATGGGGAA 802
||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||| ||
Sbjct 788 TAGAAGAAAAAGTCAATGTCTACAAAATGTTAGGCTTTGCTGTGGAAGATGTATGGGTAA 847
Query 803 TCTTCATGAAGTGGCCTT-CTTTTTTGTCATACTCAGAG-AAGAAGATAACTCATACGTT 860
|||||| ||||||||| | || ||| | |||||||||| || ||||| ||||| ||| |
Sbjct 848 TCTTCAAGAAGTGGCCATACTCTTT-GAAATACTCAGAGGAA-AAGATTACTCAGACGAT 905
Query 861 TGAAACCCTT-ATGA-GTTGCGGTCT 884
||||||| || | || || |||||||
Sbjct 906 TGAAACC-TTGAAGATGT-GCGGTCT 929
Score = 180 bits (97), Expect = 4e-44
Identities = 192/236 (81%), Gaps = 14/236 (6%)
Strand=Plus/Plus
Query 82 TCTTCTTTGTCAAATTCGTTCT---CTTTTACTAGTG-T--TGCTGATGCGAGCCTTAGA 135
||| |||| || ||||| |||| || || |||||| | |||||||| |||||||| |
Sbjct 214 TCTGCTTTTTCCAATTCCTTCTCCACTGTTGCTAGTGCTGCTGCTGATGTGAGCCTTATA 273
Query 136 GATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTTGATTCATTGGGTTTAAC 194
||| ||| ||||| || ||||||| || ||||||||||||||||||||||||||||| |
Sbjct 274 GATAGTCAAAAAGGTAAGAACTTTA-CAGTCTCTTACCTCGTTGATTCATTGGGTTTA-C 331
Query 195 C-ACAAAA-CTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAGGACAAGGAAAATCCG 252
| | |||| ||||| |||||||| ||||||||| | || |||||||||||| |||||
Sbjct 332 CTA-AAAAGCTCGCTGAATCGATTTCAAAGAAATTTAGATTCGAGGACAAGGCCAATCCT 390
Query 253 GATTCTGTTGTGAGTCTTCTT-ACAAGTTATGGCTTCACAAAGTCTCAGATTTCAA 307
||||||||| |||||||| || | |||| |||| |||||| |||||||| ||||
Sbjct 391 GATTCTGTTCTGAGTCTT-TTGAGAAGTCATGGGTTCACAGTTTCTCAGATCTCAA 445
> AT1G62120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22960191-22961779 REVERSE
LENGTH=1589
Length=1589
Score = 303 bits (164), Expect = 2e-81
Identities = 324/398 (81%), Gaps = 24/398 (6%)
Strand=Plus/Plus
Query 943 GAGCAGAAGATAGTA-AACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCAGCAGAGACG 1000
||| ||||||||| | |||||| |||||| | ||| |||||||||||||||||||||| |
Sbjct 1023 GAGAAGAAGATAG-AGAACTCCGTTGAAACA-TTTCTAGGCCTAGGATTCAGCAGAGATG 1080
Query 1001 AGTTTGCGATGATGATCAAGCG-TTATCCTCAATGCATT-GACTATACTGCCGAGACAG- 1057
||||| ||||||| ||||||| || ||||| |||||| || ||| || | ||| |
Sbjct 1081 AGTTTTTGATGATGGTCAAGCGATT-CCCTCAGTGCATTGGA-TATTCTACAGAG-TTGA 1137
Query 1058 TGAAGAAGAAAACTGATTTTATTGTGA-GGAAGATGAATTGGCCACTAGAGGGTTTGGTT 1116
|||||| ||| ||||| ||| | |||| || ||||||||||||||||| ||| | ||| |
Sbjct 1138 TGAAGACGAAGACTGAGTTTCTGGTGACGG-AGATGAATTGGCCACTAAAGGCTGTGGCT 1196
Query 1117 TTGATCCCTCAGATATTTGGATACAGCCTGGAGAAGAGGACTGTCCCAAGGTGTAATGTA 1176
| ||||||||| || | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 TCAATCCCTCAGGTACTCGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTT 1256
Query 1177 ATCAAAACTCTCATGTCAAAAGGATTGCTTGAAAGTGAAAC-CCCTCCAATGTCATCTAT 1235
|||||| |||||| |||||||||||||| ||||||||| | ||||||||| || ||| |
Sbjct 1257 ATCAAAGTTCTCATCTCAAAAGGATTGCTCGAAAGTGAA-CTCCCTCCAATATCCTCTGT 1315
Query 1236 TTTGACAAGTACC-GATCAGGCATTTTTG-AGGAGGTATGTGATGAAG--T-ACGACAAG 1290
||||||||||||| | | ||| ||||| | | |||||| | ||| | | ||||||
Sbjct 1316 TTTGACAAGTACCAG-TGAGGTGTTTTTATAT-ATGTATGTTAGGAAACATGATGACAAG 1373
Query 1291 CTG---GTGCCTGAGTTGATGGCTATCTTCACTGGAGA 1325
| | ||| |||||||||||||||||||||| |||||
Sbjct 1374 CAGCTTGTGGCTGAGTTGATGGCTATCTTCACCGGAGA 1411
> AT1G61990.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22911205-22912935 FORWARD
LENGTH=1731
Length=1731
Score = 289 bits (156), Expect = 6e-77
Identities = 271/326 (83%), Gaps = 10/326 (3%)
Strand=Plus/Plus
Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTGCCT-AATTT 59
|||||||||||||| | ||||||||||||||||||||| | | ||||| ||| | | |||
Sbjct 249 ATGTATTCTCTGATTCTCCATGGAAGAAGGTTGGTCCAATCGCAGAAA-TGCTTGAGTTT 307
Query 60 CAGAGTTTCAGTGCAAACCGCATCTT-CTTTGTCAAATTCGTTCTCTTTTACTAGTGTTG 118
|| ||||||||||||| |||| || |||||| ||||| ||||||| | |||| | ||
Sbjct 308 GAGTGTTTCAGTGCAAAATGCAT-TTGTTTTGTCCAATTCCTTCTCTTCTGCTAGAGCTG 366
Query 119 CTGATGCGAGCCTTAGAGATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTT 177
|||||| |||| |||||||||||| |||||||| ||||||| || ||||||||||||||
Sbjct 367 CTGATGTGAGCATTAGAGATGGTCGAAAAGGGAAGAACTTTA-CAGTCTCTTACCTCGTT 425
Query 178 GATTCATTGGGTTTAACCACAAAA-CTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGA 236
||||||||||||||| | | |||| ||||| ||||| ||||||| |||||| ||| | ||
Sbjct 426 GATTCATTGGGTTTATCTA-AAAAGCTCGCTGAATCCATCTCAAGGAAAGTTAGCTTTGA 484
Query 237 GGACAAGGAAAATCCGGATTCTGTTGTGAGTCT-TCTTACAAGTTATGGCTTCACAAAGT 295
|||||||| ||||| ||||||||| | ||||| | ||| |||||| || |||||| | |
Sbjct 485 GGACAAGGTCAATCCTGATTCTGTTCTAAGTCTGT-TTAGAAGTTACGGGTTCACAGATT 543
Query 296 CTCAGATTTCAAGTATCATTACGGAT 321
||||||| || | ||||||||||||
Sbjct 544 CTCAGATCTCTACCATCATTACGGAT 569
> AT1G62010.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22915745-22917330 FORWARD
LENGTH=1586
Length=1586
Score = 283 bits (153), Expect = 3e-75
Identities = 263/315 (83%), Gaps = 12/315 (4%)
Strand=Plus/Plus
Query 939 TTCAGAGCAGAAGATAGTAAACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCAGCAGAG 997
||| ||| ||||| ||| ||||| || |||| | ||| |||| ||||||||||||||||
Sbjct 954 TTCGGAGAAGAAGGTAGCCAACTCTATAGAAACA-TTTCTAGGTCTAGGATTCAGCAGAG 1012
Query 998 ACGAGTTTGCGATGATGATCAAGC-GTTATCCTCAATGCATT-GACTATACTGCCGAGAC 1055
| | |||| ||||||| |||||| ||| ||||| || ||| || ||| || | ||| |
Sbjct 1013 ATGTGTTTATGATGATGTTCAAGCGGTT-TCCTCCGTGTATTGGA-TATTCTACAGAGGC 1070
Query 1056 AGTGAAGAAGAAAACTGA-TTTTATTGT-GAGGAAGATGAATTGGCCACTAGAGGGTTTG 1113
||||||||||| ||||| |||| | || ||| |||||||||||||| || ||| | ||
Sbjct 1071 GGTGAAGAAGAAGACTGAGTTTT-TGGTCAAGG-AGATGAATTGGCCAGTAAAGGCTGTG 1128
Query 1114 GTTTTGATCCCTCAGATATTTGGATACAGCCTGGAGAAGAGGACTGTCCCAAGGTGTAAT 1173
| || ||||||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1129 GCTTCAATCCCTCAGGTACTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAAT 1188
Query 1174 GTAATCAAAACTCTCATGTCAAAAGGATTGCTTGAAAGTGAAAC-CCCTCCAATGTCATC 1232
|| |||||| ||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 1189 GTTATCAAAGTTCTCATGTCAAAAGGATTGCTTGAAAGTGAA-CTCCCTCCAATGTCTTC 1247
Query 1233 TATTTTGACAAGTAC 1247
| |||||||||||||
Sbjct 1248 TGTTTTGACAAGTAC 1262
> AT1G62085.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22948757-22950142 REVERSE
LENGTH=1386
Length=1386
Score = 250 bits (135), Expect = 3e-65
Identities = 281/349 (81%), Gaps = 19/349 (5%)
Strand=Plus/Plus
Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTG-CCTAATTT 59
|||||||||||||||| |||||||| |||||||||||||||| ||||| || | | ||||
Sbjct 1 ATGTATTCTCTGATACTCCATGGAAAAAGGTTGGTCCAGTTGAAGAAA-TGTCGTCATTT 59
Query 60 CAGAGTTTCAGTG--------C-AAACCGCATCTTCTTTGTCAAATTCGTTCTCTTTTAC 110
|| ||| ||||| | ||| |||||| |||| || ||||| ||||| | | |
Sbjct 60 AAGCGTTCCAGTGAACCTCCTCGAAAAGGCATCTCCTTTTTCCAATTCCTTCTCCTATGC 119
Query 111 TAGTGTTGCTGATGCGAGCCTTAGAGATGGTCTTAAAGGGAACAACTTTACCATCTCTTA 170
|| || | | |||||||||||||||| ||||| |||||| | ||| | |||||||
Sbjct 120 TAATGCTACAGATGCGAGCCTTAGAGCTGGTCGAAAAGGGTTGAGTTTTTCTGTCTCTTA 179
Query 171 CCTCGTTGATTCATTGGGTTTAACC-ACAAAAC-TCGCAGAATCGATCTCAAAGAAAGTC 228
|||||||||||||||||||||| || | |||| ||||||||||||||||||||||||||
Sbjct 180 CCTCGTTGATTCATTGGGTTTA-CCTA-AAAAGGTCGCAGAATCGATCTCAAAGAAAGTC 237
Query 229 AGCCTCGAGGACAA-GGAAAATCCGGATTCTGTTGTGAGTCTTCTT-ACAAGTTATGGCT 286
||| |||||||||| || || ||| ||||||||| ||||||| || | |||| |||| |
Sbjct 238 AGCTTCGAGGACAAAGGCAA-TCCTGATTCTGTTCTGAGTCTA-TTGAGAAGTCATGGGT 295
Query 287 TCACAAAGTCTCAGATTTCAAGTATCATTACGGATCACCCACGATTGCT 335
|||| | |||||||| ||||| |||||||||||| | |||| ||||||
Sbjct 296 TCACTGATTCTCAGATCTCAAGCATCATTACGGATTATCCACAATTGCT 344
> AT1G61980.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22908045-22909588 FORWARD
LENGTH=1544
Length=1544
Score = 243 bits (131), Expect = 5e-63
Identities = 287/362 (79%), Gaps = 12/362 (3%)
Strand=Plus/Plus
Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTGCCTAATTTC 60
|||||||||||||| | |||||||||||| |||||| |||| |||||| || | ||||
Sbjct 118 ATGTATTCTCTGATTCGCCATGGAAGAAGTTTGGTCGAGTTACAGAAATGGCGTCATTTG 177
Query 61 AGAGTTTCAGTGCAAACCGCATCTTCTTTGTCAAATTCGTTCTCTTTTACTAGTGTTGCT 120
||||||| |||||||| || ||| ||||||| ||||| ||||| | | || || |||
Sbjct 178 AGAGTTTTAGTGCAAAAGGCGTCTCCTTTGTCCAATTCCTTCTCCTCTGCTTCTGCTGC- 236
Query 121 G-ATGCGAG-CCTTAGAGATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTT 177
| | ||| || ||||| ||||| ||||| || | ||||| || ||||||||||||||
Sbjct 237 GCGTTTGAGTCC-TAGAGTTGGTCGAAAAGGTAAGAGCTTTA-CAGTCTCTTACCTCGTT 294
Query 178 GATTCATTGGGTTTAACCACAAAA-CTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGA 236
||||||||||||||| ||| |||| ||||| |||||| |||||| ||| || ||| ||||
Sbjct 295 GATTCATTGGGTTTACCCA-AAAAGCTCGCTGAATCGGTCTCAAGGAAGGTTAGCTTCGA 353
Query 237 GGACAAGGAAAATCCGGATTCTGTTGTGAGTCTTCTT-ACAAGTTATGGCTTCACAAAGT 295
||||||||| || || || |||||| ||| |||| || | |||| |||| ||||| | |
Sbjct 354 GGACAAGGACAACCCTGACTCTGTTCTGAATCTT-TTGAGAAGTCATGGGTTCACTGATT 412
Query 296 CTCAGATTTCAAGTATCATTACGGATCACCCACGATTGCTTATAT-TACATGCTGACAAA 354
||||||| || | ||| |||||||| | |||| ||||||| || | ||||||| |||
Sbjct 413 CTCAGATCTCCACCATCGTTACGGATTATCCACAATTGCTTGTAGCTG-ATGCTGAGAAA 471
Query 355 TC 356
||
Sbjct 472 TC 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5