BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg315190 Length=1338 Score E Sequences producing significant alignments: (Bits) Value AT1G61960.1 | Symbols: | Mitochondrial transcription terminati... 1408 0.0 AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 721 0.0 AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 636 0.0 AT1G62490.1 | Symbols: | Mitochondrial transcription terminati... 396 3e-109 AT1G62120.1 | Symbols: | Mitochondrial transcription terminati... 303 2e-81 AT1G61990.1 | Symbols: | Mitochondrial transcription terminati... 289 6e-77 AT1G62010.1 | Symbols: | Mitochondrial transcription terminati... 283 3e-75 AT1G62085.1 | Symbols: | Mitochondrial transcription terminati... 250 3e-65 AT1G61980.1 | Symbols: | Mitochondrial transcription terminati... 243 5e-63 > AT1G61960.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:22902150-22903837 FORWARD LENGTH=1688 Length=1688 Score = 1408 bits (762), Expect = 0.0 Identities = 918/993 (92%), Gaps = 12/993 (1%) Strand=Plus/Plus Query 355 TCCAGAGGAGCTTCAAGCTCTGAGCTTACTGAGATTGTTTCTACAGTTCCTAAGATCTTG 414 |||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||| Sbjct 474 TCCAGAGGAGCTTCAAGCTCTGAGCTCACTCAGATTGTTTCTACTGTTCCTAAAATCTTG 533 Query 415 GGAAAGAGAGGGCACAAATCTATATCTGTATACTATGATTTCGTCAAAGACATCATAGAA 474 || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 534 GGGAAGAGAGGGCACAAATCTATAACTGTATACTATGATTTCGTCAAAGACATTATAGAA 593 Query 475 GCTGATAAGAGTTCTAGTTACGAAAAACTATGCCATTCTTTTCCACAGGGTAACAAGGAA 534 |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| Sbjct 594 GCTGATAAGAGTTCTAGTTACGAAAAGTTATGTCATTCTTTTCCACAGGGTAACAA-GAA 652 Query 535 -AACAAGATCAGAAATATCTCTGTTTTGAGAGAATTGGGTGTGGCTCAGCGTTTGTTATT 593 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GAATAAGATCAGAAATATCTCTGTTTTGAGAGAATTGGGTGTGGCTCAGCGTTTGTTATT 712 Query 594 CCCCTTGCTCATCTCTGATAGCCAACCTGTTTGTGGGAAAGAAAGATTTGAAGAATCACT 653 ||| ||||||||||| ||| |||||||||| ||||| |||||||||||||||||||| || Sbjct 713 CCCTTTGCTCATCTCAGATGGCCAACCTGTCTGTGGTAAAGAAAGATTTGAAGAATCTCT 772 Query 654 CAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAGACCT-CAAAGTTTGTTGAAGCTCTGC 712 |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 773 CAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAGAC-TACAAAGTTCGTTGAAGCTCTGC 831 Query 713 GCGTTATTTACAGAATGAGCGACAAAACAATAGAAGAAAAAGTCAATGTTTACAAAAGGT 772 | ||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 832 GAGTTATTTACCGTATGAGTGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAAGGT 891 Query 773 TAGGCTTTGGTGTGGCTGATGTATGGGGAATCTTCATGAAGTGGCCTTCTTTTTTGTCAT 832 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 892 TAGGCTTTGGTGTGGCTGATGTATGGGCAATCTTCAAGAAGTGGCCTTCTTTTTTGTCAT 951 Query 833 ACTCAGAGAAGAAGATAACTCATACGTTTGAAACCCTTATGAGTTGCGGTCTTCTCAAAC 892 ||||||||||||||||||||||||| ||||||||||||| |||||| ||||| || |||| Sbjct 952 ACTCAGAGAAGAAGATAACTCATACTTTTGAAACCCTTAAGAGTTGTGGTCTGCTTAAAC 1011 Query 893 ACGAGGTCCTGTCATTGATAAAGAAGCATCCAAAGTGCATTTGTTCTTCAGAGCAGAAGA 952 |||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||||| Sbjct 1012 ACGAGGTCCTGTTATTGTTGAAGAAGCATCCAAAATGCATTTGTTCTTCAGAGCAGAAGA 1071 Query 953 TAGTAAACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCAGCAGAGACGAGTTTGCGATG 1011 | || |||||||| |||| ||| || ||||||||||||||||||||| |||||||||||| Sbjct 1072 TTGTGAACTCCATAGAAACATTCTT-AGGCCTAGGATTCAGCAGAGATGAGTTTGCGATG 1130 Query 1012 ATGATCAAGCGTTATCCTCAATGCATTGACTATACTGCCGAGACAGTGAAGAAGAAAACT 1071 ||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1131 ATGGTCAAGCGATATCCTCAGTGCATTGACTATACTGCTGAGACAGTGAAGAAGAAAACT 1190 Query 1072 GATTTTATTGTGAGGAAGATGAATTGGCCACTAGAGGGTTTGGTTTTGATCCCTCAGATA 1131 || |||||||||| ||| ||||||||||||||||||| |||||||| |||||||||| || Sbjct 1191 GAGTTTATTGTGAAGAATATGAATTGGCCACTAGAGGCTTTGGTTTCGATCCCTCAGGTA 1250 Query 1132 TTTGGATACAGCCTGGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAACTCTCATG 1191 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1251 TTTGGATACAGCCTGGAGAAGAGAACTGTCCCAAGGTGTAATGTAATCAAAACTCTCATC 1310 Query 1192 TCAAAAGGATTGCTT---GA---AAGTGAAACCCCTCCAATGTCATCTATTTTGACAAGT 1245 ||||||||| || | || ||||||| ||||||||||||||||| |||| |||||| Sbjct 1311 TCAAAAGGACTGATGAAAGACGGAAGTGAAGCCCCTCCAATGTCATCTGTTTTAACAAGT 1370 Query 1246 ACCGATCAGGCATTTTTGAGGAGGTATGTGATGAAGTACGACAAGCTGGTGCCTGAGTTG 1305 ||||||||||| ||||| |||||||||||||||||| |||||||| ||| ||||||||| Sbjct 1371 ACCGATCAGGCGTTTTTAAGGAGGTATGTGATGAAGCACGACAAGTTGGCACCTGAGTTG 1430 Query 1306 ATGGCTATCTTCACTGGAGAAAATGGGAAGTGA 1338 ||||||||||||||||||||||||||||||||| Sbjct 1431 ATGGCTATCTTCACTGGAGAAAATGGGAAGTGA 1463 Score = 468 bits (253), Expect = 7e-131 Identities = 326/361 (90%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTGCCTAATTTC 60 |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 90 ATGTATGCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTACAGAAATTGTCTAATTTC 149 Query 61 AGAGTTTCAGTGCAAACCGCATCTTCTTTGTCAAATTCGTTCTCTTTTACTAGTGTTGCT 120 ||||||||||| |||| || |||| ||||||| ||||| ||||||||| ||||||||||| Sbjct 150 AGAGTTTCAGTTCAAAACGGATCTGCTTTGTCCAATTCCTTCTCTTTTGCTAGTGTTGCT 209 Query 121 GATGCGAGCCTTAGAGATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTTGA 179 ||||||| ||||| |||| | |||||||| ||||||||||| | |||||||||| ||||| Sbjct 210 GATGCGACCCTTATAGATAGCCTTAAAGGTAACAACTTTAC-AGTCTCTTACCTAGTTGA 268 Query 180 TTCATTGGGTTTAACCACAAAACTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAGGA 239 ||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||| Sbjct 269 TTCATTGGGTTTAACCACAAAGCTCGCAGAATCGATCTCCAAGAAAGTAAGCTTCGAGGA 328 Query 240 CAAGGA-AAATCCGGATTCTGTTGTGAGTCTTCTTACAAGTTATGGCTTCACAAAGTCTC 298 | ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 329 GA-GGAGAAATCCGGATTCTGTTCTGAGTCTTCTTACAAGTTATGGGTTCACAAAGTCTC 387 Query 299 AGATTTCAAGTATCATTACGGATC-ACCCACGATTGCTTATATTACATGCTGACAAATCC 357 ||||||||||||||||||| ||| |||||||||||||| |||| ||||||| |||||| Sbjct 388 AGATTTCAAGTATCATTACT-ATCTACCCACGATTGCTTGCATTAGATGCTGAGAAATCC 446 Query 358 A 358 | Sbjct 447 A 447 > AT1G62150.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:22970029-22971764 REVERSE LENGTH=1736 Length=1736 Score = 721 bits (390), Expect = 0.0 Identities = 1011/1298 (78%), Gaps = 93/1298 (7%) Strand=Plus/Plus Query 87 TTTGTCAAATTCGTTCTC-T-T-TTACTAGTGTTGCTGATGCGAGCCTTAGAGATGGTCT 143 ||| || ||||| ||||| | | || ||| || |||||||| |||| |||||||| ||| Sbjct 277 TTTTTCCAATTCATTCTCTTCTGTTGCTACTGCTGCTGATGTGAGCTTTAGAGATAGTCG 336 Query 144 TAAAGGGAACAACTTTACCATCTCTTACCTCGTTGATTCATTGGGTTTAACCACAAAACT 203 ||||| ||||||||||| ||||||||||||||||||||||||||||| | |||| || Sbjct 337 AAAAGGTAACAACTTTACTGTCTCTTACCTCGTTGATTCATTGGGTTTAGCTTCAAAGCT 396 Query 204 CGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAGGACAAGGAAAATCCGGATTCTGTTGT 263 ||||||||||||||| | ||||||||| ||||| |||||| ||||| ||| | ||| | Sbjct 397 CGCAGAATCGATCTCGATGAAAGTCAGTTTCGAGAACAAGGGCAATCCTGATACAGTTCT 456 Query 264 GAGTCTTCTTACAAGTTATG-GCTTCACAAAGTCTCAGATTTCAAGTATCATTACGGATC 322 || |||||||| |||| ||| | |||||| | |||||||| || || |||||| ||||| Sbjct 457 GAATCTTCTTAGAAGTCATGAG-TTCACAGATTCTCAGATCTCCAGCATCATTTCGGATT 515 Query 323 ACCCA-CGATTGCTTATATTACATGCTGACAAATCCAGA-GG----A-GCTTCA----A- 370 | ||| | ||||||| || | ||||||| |||| || || | ||||| | Sbjct 516 ATCCAAC-ATTGCTTGTAGCAGATGCTGA-AAATTCACTTGGTCCCAAGCTTCTGTTGAT 573 Query 371 GC--TCT-GAG---CTT-A--CT--GAGAT---TG---TT-T--CTACAGTTCCTAAGAT 410 || ||| ||| ||| | || ||| | || || | ||| ||||||||| || Sbjct 574 GCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTTCTAAAGTTCCTAAAAT 633 Query 411 CTTGGGAAAGAGAGGGCACAAATCTATAT-CTGTATACTATGATTTCGTCAAAGACATCA 469 ||| |||| || |||| ||||| ||| | | |||||||||| |||||||||| || | Sbjct 634 CTTAGGAATGAAAGGGGACAAAAGTATCGGCAG-ATACTATGATATCGTCAAAGAGATTA 692 Query 470 TAGAAGCTGATAAGAGTTCTA-GTTACGAAAAACTATGCCATTCTTTTCCACAGGGTAAC 528 ||||||| |||||||| || | ||| |||||| || || |||||||| || |||||| Sbjct 693 TAGAAGCGGATAAGAGCTCCAAGTT-CGAAAAGCTGTGTCATTCTTTGCCTGAGGGTAGT 751 Query 529 AAGGA--A-AACAAGATCAGAAATATCTCTG-TTTTGAGAGAATTGGGTGTGGCTCAGCG 584 ||| | | || || ||||| ||| | | || |||||||||| ||||||||| |||| | Sbjct 752 AAGCAGGAGAATAAAATCAGGAATGTAT-TGGTTTTGAGAGATTTGGGTGTGCCTCAAAG 810 Query 585 TTTGTTATTCCCCTTGCTCATCTCTGAT-AGCCAAC-CTGTTTGTGGGAAAGAAA-GATT 641 ||||||||| | |||||| ||||| || | ||| ||| | |||| ||||||| | || Sbjct 811 GTTGTTATTCTCATTGCTCTTCTCTAATCA-CCATGTCTGCT-GTGGAAAAGAAAAG-TT 867 Query 642 TGAAGAATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAG-ACCTC-AAAGTTT 699 ||||||||||||||| |||||||||| ||||||||||||||| | || || ||||||| Sbjct 868 TGAAGAATCACTCAACAAGGTTGTTGGGATGGGTTTTGATCCC-ACCAC-TCCAAAGTTT 925 Query 700 GTTGAAGCTCTGCGCGTTATTTACAGAATGAGCGACAAAACAATAGAAGAAAAAGTCAAT 759 || |||||| | || || ||||| || |||||||||||| | |||||||||| ||||| Sbjct 926 GTGGAAGCTTTATGCATTGTTTACGGATTGAGCGACAAAAGACTAGAAGAAAACTTCAAT 985 Query 760 GTTTACAAAAGGTTAGGCTTTGGTGTGG-CTGATGTATGGGGAA-TCTTCATGAAGTGGC 817 || ||||| || || ||||| ||| | |||||||||| || | |||| |||||| | Sbjct 986 GTCTACAAGAGATTTGGCTTAACTGTAAAC-GATGTATGGG-AACTTTTCAAGAAGTGCC 1043 Query 818 CTTCTTTT-TTGTCATACTCAGAGAAGAAGATAACTCATACGTTTGAAACCCTTAT-GAG 875 || | ||| ||| |||||| ||||| | ||||| ||| || |||||| || ||| ||| Sbjct 1044 CTGCCTTTCTTGG-ATACTCTGAGAATAGGATAATTCAGACATTTGAAGCC-TTAAAGAG 1101 Query 876 TTGCGGTCT-TCTCAAACACGAGGTCCTGTCATTGATAAAGAAGCATCCAA-AGTGCATT 933 || ||||| | | || | ||||| ||||| || | |||||| ||||| | ||| || Sbjct 1102 GTGTGGTCTGTG-CGAAGATGAGGTATTGTCAGTGTTCAAGAAGAATCCACTA-TGC-TT 1158 Query 934 T-GTTCTTCAGAGCAGAAGATAGTAAACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCA 991 || ||||||||||| ||||| | |||||||| |||| |||| | |||| ||||||||| Sbjct 1159 ACGTGCTTCAGAGCAGCAGATATTGAACTCCATGGAAACATTTAT-AGGCTTAGGATTCA 1217 Query 992 GCAGAGACGAGTTTG-CGATGATGATCAAGCGT-TATCCTCAATGCATTG-ACTATACTG 1048 ||||||| ||||||| | |||||| ||||| | | |||||| ||||||| | ||| ||| Sbjct 1218 GCAGAGATGAGTTTGTC-ATGATGGTCAAGTGCCT-TCCTCAGTGCATTGGA-TATTCTG 1274 Query 1049 CCGAGACAGTGAAGAAGAAAACTGATTTTATTGTGAGGAAGATGAATTGGCCACT-AGAG 1107 | |||| ||||||||||| ||||| ||| | |||| |||||||||||||||||| | || Sbjct 1275 CAGAGATGGTGAAGAAGAAGACTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTTA-AG 1333 Query 1108 GGT--TTGGTTTTGATCCCTCAGATATTTGGATACAGCCTGGAGAAGAGGACTGTCCCAA 1165 | | || ||| | |||||||| || ||||||| ||| ||||||||||||||||||||| Sbjct 1334 G-TCATTACTTT-GTTCCCTCAGGTACTTGGATATAGCATGGAGAAGAGGACTGTCCCAA 1391 Query 1166 GGTGTAATGTAATCAAAACTCTCATGTCAAAAGGATTGCTTGAAAGTGAAAC-CCCTCCA 1224 ||||||||||||||||| |||||||||| ||||||||||||| ||| ||| | ||||||| Sbjct 1392 GGTGTAATGTAATCAAAGCTCTCATGTCCAAAGGATTGCTTGGAAGCGAA-CTCCCTCCA 1450 Query 1225 ATGTCATCTATTTTGACAAGTACCGATCAGGCATTTTTGAGGAGGTATGTGAT-GA--A- 1280 ||| | ||| ||||| || ||||||||||| | || || | ||||||||| | || | Sbjct 1451 ATGGCGTCTGTTTTGGCATGTACCGATCAGACCTTCTTAAAAAGGTATGTGGTTGAGCAT 1510 Query 1281 GTACGACAAGCTGGTGCCTGAGTTGATGGCTATCTTCA 1318 | | || |||||||||| |||||||||| ||||||||| Sbjct 1511 G-ATGAAAAGCTGGTGCTTGAGTTGATGTCTATCTTCA 1547 > AT1G62110.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:22957876-22959711 REVERSE LENGTH=1836 Length=1836 Score = 636 bits (344), Expect = 0.0 Identities = 789/996 (79%), Gaps = 62/996 (6%) Strand=Plus/Plus Query 358 AGAGGAGCTTCAAGCTCTGAGCTTACTGAGATTGTTTCTACAGTTCCTAAGATCTTGGGA 417 ||||||||||||||| ||||||| ||| |||||||||||||||||||||| || |||||| Sbjct 617 AGAGGAGCTTCAAGCCCTGAGCTCACTCAGATTGTTTCTACAGTTCCTAAAATATTGGGA 676 Query 418 A--AGAGAGGGCACAAATCTATA-TCTGTATACTATGATTTCGTCAAAGACATCATAGAA 474 | | |||||| | || ||| || | | ||||||||||||||||||||| || |||||| Sbjct 677 ATGAAAGAGGG-A-AAGTCTCTAGGCAG-ATACTATGATTTCGTCAAAGAGATTATAGAA 733 Query 475 GCTGATAAGAGTT-CTAGTTACGAAAAACTATGCCATTCTTTTCCACAGGGTAACA---A 530 || |||||||||| | || ||||||| | || || |||| ||| ||| ||| | | Sbjct 734 GCAGATAAGAGTTCCAAG-TACGAAACTTTGTGTCAACCTTTGCCAGAGGCTAATAGGCA 792 Query 531 GGAAAACAAGATCAGAAATATCTCTGTT-TTGAGAGAATTGGGTGTGGCTCAG-CGTTTG 588 || || || ||||||||| | || ||| || ||||| ||||||||| ||||| | ||| Sbjct 793 GGGTAATAAAATCAGAAATGTTTCGGTTCTT-AGAGACTTGGGTGTGCCTCAGAAG-TTG 850 Query 589 TTATTCCCCTTGCTCATCTCTGATAG-CCAACCTGTTTGTGGGAAAGAAAGA-TTTGAAG 646 |||||| ||||||||||||||||| | ||||||||||||||| ||||||| | ||||||| Sbjct 851 TTATTCTCCTTGCTCATCTCTGAT-GCCCAACCTGTTTGTGGAAAAGAAA-ATTTTGAAG 908 Query 647 AATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCGGAG-ACCTCAAAGTTTGTTGAA 705 ||||||||||||||||||||||||||||||||||||| | |||||||||||||| || Sbjct 909 AATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCA-ACCACCTCAAAGTTTGTCCAA 967 Query 706 GCTCTGCGCGTTATTTACAGAATGAGCGACAAAACAATAGAAGAAAAAGTCAATGTTTAC 765 ||||| | | | |||||||| | | |||||||||||||||||||| ||| ||||| || Sbjct 968 GCTCTTAGGGCTGTTTACAGATTCACCGACAAAACAATAGAAGAAAGAGTTAATGTGTAT 1027 Query 766 AAAAGGTTAGGCTTTGGTGTGGCTGATGTATGGGGAATCTTCATGAAGTGGCCTT-CTTT 824 ||| |||| ||||||| ||||| |||||||||| ||| |||| ||| || |||| |||| Sbjct 1028 AAAGGGTTCGGCTTTGCTGTGGAAGATGTATGGGCAATGTTCAAGAAATGTCCTTACTTT 1087 Query 825 TTTGTCATACT-CAGAGAAGAAGATAACTCATACGTTTGAAACCCTTATGA-GTTGCGGT 882 || | ||| | | ||||||||||| ||| || |||||||||| | || || | || Sbjct 1088 TT-GA-ATAGTTCGGAGAAGAAGATTGGTCAGACAATTGAAACCCTGAAGAAGT-GTGGA 1144 Query 883 CTTCTCAAACACGAGGTCCTGTCATTGAT-AAAGAAGCATCCAAAGTGCATTTGTTCTTC 941 || ||| || |||||||| | ||| || | ||| ||| |||| |||||||| || |||| Sbjct 1145 CTACTCGAAGACGAGGTCATCTCAGTGTTGAAA-AAGTATCCGCAGTGCATTGGTACTTC 1203 Query 942 AGAGCAGAAGATAGTAAACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCAGCAGAGACG 1000 ||||||||||||| | ||||||||||||| |||| | ||||||||| ||||||||||| | Sbjct 1204 AGAGCAGAAGATATTGAACTCCATTGAAATATTTCT-AGGCCTAGGCTTCAGCAGAGATG 1262 Query 1001 AGTTTGCGATGATGATCAAGCG-TTATCCTCAATG-CATTGACTATA-CTGCCGAGACAG 1057 |||| | ||| | ||||| || |||||| || | || | | || |||| ||||| | Sbjct 1263 AGTTCATAACAATGGTTAAGCGCTT-TCCTCAGTGTC-TT-ATTTTATCTGCAGAGACGG 1319 Query 1058 TGAAGAAGAAAACTGATTTTATTGTGAGGAAGATGAATTGGCCACTAGAGGGTT-TGGTT 1116 |||||||||| | ||| ||| | |||| |||||||||||||||||| || || | ||||| Sbjct 1320 TGAAGAAGAAGATTGAGTTTGTGGTGAAGAAGATGAATTGGCCACT-GAAGGATGTGGTT 1378 Query 1117 TTGA-TCCCT-CAGATATTTGGATACAGCCTGGAGAAGAGGACTGTCCCAAGGTGTAATG 1174 | | ||| | | | || ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1379 TCAAATCC-TACGG-TACTTGGATACAACCTGGAGAAGAGGACTGTCCCAAGGTGTAATG 1436 Query 1175 TAATCAAAACTCTCATGTCAAAAGGA-TTGCTTG-A-A-A--G----TGAAAC-CCCTCC 1223 | || || |||||||||||||| || || || | | | | | |||| | |||||| Sbjct 1437 TTATTGAAGCTCTCATGTCAAAAAGACTT-CTCGGAGACACAGGAAGTGAA-CTCCCTCC 1494 Query 1224 AATGTCATCTATTTTGACAAGTACCGATCAGGCATTTTTGAGGAGGTATGTGATGAAGTA 1283 |||||| ||| ||||| | |||| ||| || || || | |||||||||| ||| | Sbjct 1495 AATGTCGTCTGTTTTGGTATGTACTGATGAGTTGTTCTTAAAAAGGTATGTGAGGAACCA 1554 Query 1284 CG---ACAAG---CTGGTGCCTGAGTTGATGGCTAT 1313 | ||||| ||||||| |||||||||| |||| Sbjct 1555 TGGTGACAAGGAGCTGGTGCTTGAGTTGATGACTAT 1590 Score = 292 bits (158), Expect = 4e-78 Identities = 295/361 (82%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTGCCTAATTTC 60 ||||||||| |||||| |||||||||||||||||| |||||| |||||| || | |||| Sbjct 230 ATGTATTCTGTGATACTCCATGGAAGAAGGTTGGTACAGTTGCAGAAATGGCGTCATTTG 289 Query 61 AGAGTT-TCAGTGCAAACCGCATCTTCTTTGTCAAATTCGT-TCTCTTTTACTAGTGTTG 118 ||| || | ||||||| | ||| |||| || ||||| | | |||| | |||||| | Sbjct 290 AGATTTGTT-GTGCAAAATGGATCAGCTTTTTCTAATTCCTAT-TCTTCTGCTAGTGCTA 347 Query 119 CTGATGCGAGCCTTA-GAGATGGTCTTAAAGGGAACAACTTTACCATCTCTTACCTCGTT 177 ||||| |||| | | ||||||||| |||| ||| |||||||| |||||||||||||| Sbjct 348 CTGATTTGAGC-TCAAGAGATGGTCGAAAAGTGAAGAACTTTACTGTCTCTTACCTCGTT 406 Query 178 GATTCATTGGGTTTAACCACAAAACTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAG 237 ||||||||||||||| | ||||||||||| ||||| ||||||||||||||||| ||| | Sbjct 407 GATTCATTGGGTTTAGCTACAAAACTCGCTGAATCAATCTCAAAGAAAGTCAGTTTCGTG 466 Query 238 GACAAGGAAAATCCGGATTCT-GTTGTGAGTCTTCTTACAAGTTATGGCTTCACAAAGTC 296 |||||| ||||| |||| | ||| |||||||| ||| ||||||||| |||||||| || Sbjct 467 AACAAGGGCAATCCTGATT-TAGTTCTGAGTCTTTTTAGAAGTTATGGGTTCACAAATTC 525 Query 297 TCAGATTTCAAGTATCATTACGGATCACCC-ACGATTGCTTATATTACATGCTGACAAAT 355 |||||| || || |||||||||||| | || | |||||||| || || ||||||| |||| Sbjct 526 TCAGATCTCCAGCATCATTACGGATTATCCTA-GATTGCTTCTAATAGATGCTGAGAAAT 584 Query 356 C 356 | Sbjct 585 C 585 > AT1G62490.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:23130405-23131533 REVERSE LENGTH=1005 Length=1005 Score = 396 bits (214), Expect = 3e-109 Identities = 414/506 (82%), Gaps = 31/506 (6%) Strand=Plus/Plus Query 394 TCTACAGTTCCTAAGA-TCTTGGGAAAGAGAGGGCACAAATCTAT-ATCTGTATACTATG 451 ||| || ||||||| | |||||||||| |||||||||||| || | | || ||||||||| Sbjct 440 TCT-CAATTCCTAA-ACTCTTGGGAAAAAGAGGGCACAAAACTCTCAGCT-TATACTATG 496 Query 452 ATTTCGTCAAAGACA-TCATAGAAGCTGATAAGAGTTCT-AGTTACGAAAAACTATGCCA 509 ||||||| ||||| | | ||||||| |||||||||||| || || |||| |||| || Sbjct 497 ATTTCGTTAAAGAGAGT-TTAGAAGCAGATAAGAGTTCTAAG-TATGAAACTTTATGTCA 554 Query 510 TTCTTTTCCACAGGGTAA-CAAGGAAAACAAGATCAGAAATATCTCTGTTTTGAGAGAAT 568 ||||||||||||||||| | ||| ||||||| |||||| | || ||||| ||||||| Sbjct 555 GTCTTTTCCACAGGGTAATC-TGGAGAACAAGAAGAGAAATGTATCGGTTTTAAGAGAAT 613 Query 569 TGGGTGTGGCTCAGC--GTTTGTTATTCCCCTTGCTCATCTCTGATAGCCAACCTGTTTG 626 |||| || |||| | | ||||||||||||||||| || || | | | |||||||| || Sbjct 614 TGGGAATGCCTCA-CAAG-TTGTTATTCCCCTTGCTTATATCCGTTGGTCAACCTGTATG 671 Query 627 TGGGAAAGAAAGATTTGAAGA-ATCACTCAAGAAGGTTGTTGAGATGGGTTTTGATCCGG 685 ||| ||||| |||||| || | || ||||||||||| |||||||||||||||||||| | Sbjct 672 TGGAAAAGATAGATTT-AATACGTCTCTCAAGAAGGTAGTTGAGATGGGTTTTGATCC-G 729 Query 686 A-GACCTCAAAGTTTGTTGAAGCTCTGCGCGTTAT-TTACAG-AATGAGCGACAAAACAA 742 | ||| |||||||||| ||||||| | || ||| |||| | ||||| ||||||||||| Sbjct 730 ACCACCGCAAAGTTTGTCAAAGCTCTCCACG-TATCTTAC-GAAATGAACGACAAAACAA 787 Query 743 TAGAAGAAAAAGTCAATGTTTACAAAAGGTTAGGCTTTGGTGTGGCTGATGTATGGGGAA 802 ||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||| || Sbjct 788 TAGAAGAAAAAGTCAATGTCTACAAAATGTTAGGCTTTGCTGTGGAAGATGTATGGGTAA 847 Query 803 TCTTCATGAAGTGGCCTT-CTTTTTTGTCATACTCAGAG-AAGAAGATAACTCATACGTT 860 |||||| ||||||||| | || ||| | |||||||||| || ||||| ||||| ||| | Sbjct 848 TCTTCAAGAAGTGGCCATACTCTTT-GAAATACTCAGAGGAA-AAGATTACTCAGACGAT 905 Query 861 TGAAACCCTT-ATGA-GTTGCGGTCT 884 ||||||| || | || || ||||||| Sbjct 906 TGAAACC-TTGAAGATGT-GCGGTCT 929 Score = 180 bits (97), Expect = 4e-44 Identities = 192/236 (81%), Gaps = 14/236 (6%) Strand=Plus/Plus Query 82 TCTTCTTTGTCAAATTCGTTCT---CTTTTACTAGTG-T--TGCTGATGCGAGCCTTAGA 135 ||| |||| || ||||| |||| || || |||||| | |||||||| |||||||| | Sbjct 214 TCTGCTTTTTCCAATTCCTTCTCCACTGTTGCTAGTGCTGCTGCTGATGTGAGCCTTATA 273 Query 136 GATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTTGATTCATTGGGTTTAAC 194 ||| ||| ||||| || ||||||| || ||||||||||||||||||||||||||||| | Sbjct 274 GATAGTCAAAAAGGTAAGAACTTTA-CAGTCTCTTACCTCGTTGATTCATTGGGTTTA-C 331 Query 195 C-ACAAAA-CTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGAGGACAAGGAAAATCCG 252 | | |||| ||||| |||||||| ||||||||| | || |||||||||||| ||||| Sbjct 332 CTA-AAAAGCTCGCTGAATCGATTTCAAAGAAATTTAGATTCGAGGACAAGGCCAATCCT 390 Query 253 GATTCTGTTGTGAGTCTTCTT-ACAAGTTATGGCTTCACAAAGTCTCAGATTTCAA 307 ||||||||| |||||||| || | |||| |||| |||||| |||||||| |||| Sbjct 391 GATTCTGTTCTGAGTCTT-TTGAGAAGTCATGGGTTCACAGTTTCTCAGATCTCAA 445 > AT1G62120.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:22960191-22961779 REVERSE LENGTH=1589 Length=1589 Score = 303 bits (164), Expect = 2e-81 Identities = 324/398 (81%), Gaps = 24/398 (6%) Strand=Plus/Plus Query 943 GAGCAGAAGATAGTA-AACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCAGCAGAGACG 1000 ||| ||||||||| | |||||| |||||| | ||| |||||||||||||||||||||| | Sbjct 1023 GAGAAGAAGATAG-AGAACTCCGTTGAAACA-TTTCTAGGCCTAGGATTCAGCAGAGATG 1080 Query 1001 AGTTTGCGATGATGATCAAGCG-TTATCCTCAATGCATT-GACTATACTGCCGAGACAG- 1057 ||||| ||||||| ||||||| || ||||| |||||| || ||| || | ||| | Sbjct 1081 AGTTTTTGATGATGGTCAAGCGATT-CCCTCAGTGCATTGGA-TATTCTACAGAG-TTGA 1137 Query 1058 TGAAGAAGAAAACTGATTTTATTGTGA-GGAAGATGAATTGGCCACTAGAGGGTTTGGTT 1116 |||||| ||| ||||| ||| | |||| || ||||||||||||||||| ||| | ||| | Sbjct 1138 TGAAGACGAAGACTGAGTTTCTGGTGACGG-AGATGAATTGGCCACTAAAGGCTGTGGCT 1196 Query 1117 TTGATCCCTCAGATATTTGGATACAGCCTGGAGAAGAGGACTGTCCCAAGGTGTAATGTA 1176 | ||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1197 TCAATCCCTCAGGTACTCGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTT 1256 Query 1177 ATCAAAACTCTCATGTCAAAAGGATTGCTTGAAAGTGAAAC-CCCTCCAATGTCATCTAT 1235 |||||| |||||| |||||||||||||| ||||||||| | ||||||||| || ||| | Sbjct 1257 ATCAAAGTTCTCATCTCAAAAGGATTGCTCGAAAGTGAA-CTCCCTCCAATATCCTCTGT 1315 Query 1236 TTTGACAAGTACC-GATCAGGCATTTTTG-AGGAGGTATGTGATGAAG--T-ACGACAAG 1290 ||||||||||||| | | ||| ||||| | | |||||| | ||| | | |||||| Sbjct 1316 TTTGACAAGTACCAG-TGAGGTGTTTTTATAT-ATGTATGTTAGGAAACATGATGACAAG 1373 Query 1291 CTG---GTGCCTGAGTTGATGGCTATCTTCACTGGAGA 1325 | | ||| |||||||||||||||||||||| ||||| Sbjct 1374 CAGCTTGTGGCTGAGTTGATGGCTATCTTCACCGGAGA 1411 > AT1G61990.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:22911205-22912935 FORWARD LENGTH=1731 Length=1731 Score = 289 bits (156), Expect = 6e-77 Identities = 271/326 (83%), Gaps = 10/326 (3%) Strand=Plus/Plus Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTGCCT-AATTT 59 |||||||||||||| | ||||||||||||||||||||| | | ||||| ||| | | ||| Sbjct 249 ATGTATTCTCTGATTCTCCATGGAAGAAGGTTGGTCCAATCGCAGAAA-TGCTTGAGTTT 307 Query 60 CAGAGTTTCAGTGCAAACCGCATCTT-CTTTGTCAAATTCGTTCTCTTTTACTAGTGTTG 118 || ||||||||||||| |||| || |||||| ||||| ||||||| | |||| | || Sbjct 308 GAGTGTTTCAGTGCAAAATGCAT-TTGTTTTGTCCAATTCCTTCTCTTCTGCTAGAGCTG 366 Query 119 CTGATGCGAGCCTTAGAGATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTT 177 |||||| |||| |||||||||||| |||||||| ||||||| || |||||||||||||| Sbjct 367 CTGATGTGAGCATTAGAGATGGTCGAAAAGGGAAGAACTTTA-CAGTCTCTTACCTCGTT 425 Query 178 GATTCATTGGGTTTAACCACAAAA-CTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGA 236 ||||||||||||||| | | |||| ||||| ||||| ||||||| |||||| ||| | || Sbjct 426 GATTCATTGGGTTTATCTA-AAAAGCTCGCTGAATCCATCTCAAGGAAAGTTAGCTTTGA 484 Query 237 GGACAAGGAAAATCCGGATTCTGTTGTGAGTCT-TCTTACAAGTTATGGCTTCACAAAGT 295 |||||||| ||||| ||||||||| | ||||| | ||| |||||| || |||||| | | Sbjct 485 GGACAAGGTCAATCCTGATTCTGTTCTAAGTCTGT-TTAGAAGTTACGGGTTCACAGATT 543 Query 296 CTCAGATTTCAAGTATCATTACGGAT 321 ||||||| || | |||||||||||| Sbjct 544 CTCAGATCTCTACCATCATTACGGAT 569 > AT1G62010.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:22915745-22917330 FORWARD LENGTH=1586 Length=1586 Score = 283 bits (153), Expect = 3e-75 Identities = 263/315 (83%), Gaps = 12/315 (4%) Strand=Plus/Plus Query 939 TTCAGAGCAGAAGATAGTAAACTCCATTGAAA-ATTTTTTAGGCCTAGGATTCAGCAGAG 997 ||| ||| ||||| ||| ||||| || |||| | ||| |||| |||||||||||||||| Sbjct 954 TTCGGAGAAGAAGGTAGCCAACTCTATAGAAACA-TTTCTAGGTCTAGGATTCAGCAGAG 1012 Query 998 ACGAGTTTGCGATGATGATCAAGC-GTTATCCTCAATGCATT-GACTATACTGCCGAGAC 1055 | | |||| ||||||| |||||| ||| ||||| || ||| || ||| || | ||| | Sbjct 1013 ATGTGTTTATGATGATGTTCAAGCGGTT-TCCTCCGTGTATTGGA-TATTCTACAGAGGC 1070 Query 1056 AGTGAAGAAGAAAACTGA-TTTTATTGT-GAGGAAGATGAATTGGCCACTAGAGGGTTTG 1113 ||||||||||| ||||| |||| | || ||| |||||||||||||| || ||| | || Sbjct 1071 GGTGAAGAAGAAGACTGAGTTTT-TGGTCAAGG-AGATGAATTGGCCAGTAAAGGCTGTG 1128 Query 1114 GTTTTGATCCCTCAGATATTTGGATACAGCCTGGAGAAGAGGACTGTCCCAAGGTGTAAT 1173 | || ||||||||| || ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1129 GCTTCAATCCCTCAGGTACTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAAT 1188 Query 1174 GTAATCAAAACTCTCATGTCAAAAGGATTGCTTGAAAGTGAAAC-CCCTCCAATGTCATC 1232 || |||||| ||||||||||||||||||||||||||||||| | |||||||||||| || Sbjct 1189 GTTATCAAAGTTCTCATGTCAAAAGGATTGCTTGAAAGTGAA-CTCCCTCCAATGTCTTC 1247 Query 1233 TATTTTGACAAGTAC 1247 | ||||||||||||| Sbjct 1248 TGTTTTGACAAGTAC 1262 > AT1G62085.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:22948757-22950142 REVERSE LENGTH=1386 Length=1386 Score = 250 bits (135), Expect = 3e-65 Identities = 281/349 (81%), Gaps = 19/349 (5%) Strand=Plus/Plus Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTG-CCTAATTT 59 |||||||||||||||| |||||||| |||||||||||||||| ||||| || | | |||| Sbjct 1 ATGTATTCTCTGATACTCCATGGAAAAAGGTTGGTCCAGTTGAAGAAA-TGTCGTCATTT 59 Query 60 CAGAGTTTCAGTG--------C-AAACCGCATCTTCTTTGTCAAATTCGTTCTCTTTTAC 110 || ||| ||||| | ||| |||||| |||| || ||||| ||||| | | | Sbjct 60 AAGCGTTCCAGTGAACCTCCTCGAAAAGGCATCTCCTTTTTCCAATTCCTTCTCCTATGC 119 Query 111 TAGTGTTGCTGATGCGAGCCTTAGAGATGGTCTTAAAGGGAACAACTTTACCATCTCTTA 170 || || | | |||||||||||||||| ||||| |||||| | ||| | ||||||| Sbjct 120 TAATGCTACAGATGCGAGCCTTAGAGCTGGTCGAAAAGGGTTGAGTTTTTCTGTCTCTTA 179 Query 171 CCTCGTTGATTCATTGGGTTTAACC-ACAAAAC-TCGCAGAATCGATCTCAAAGAAAGTC 228 |||||||||||||||||||||| || | |||| |||||||||||||||||||||||||| Sbjct 180 CCTCGTTGATTCATTGGGTTTA-CCTA-AAAAGGTCGCAGAATCGATCTCAAAGAAAGTC 237 Query 229 AGCCTCGAGGACAA-GGAAAATCCGGATTCTGTTGTGAGTCTTCTT-ACAAGTTATGGCT 286 ||| |||||||||| || || ||| ||||||||| ||||||| || | |||| |||| | Sbjct 238 AGCTTCGAGGACAAAGGCAA-TCCTGATTCTGTTCTGAGTCTA-TTGAGAAGTCATGGGT 295 Query 287 TCACAAAGTCTCAGATTTCAAGTATCATTACGGATCACCCACGATTGCT 335 |||| | |||||||| ||||| |||||||||||| | |||| |||||| Sbjct 296 TCACTGATTCTCAGATCTCAAGCATCATTACGGATTATCCACAATTGCT 344 > AT1G61980.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr1:22908045-22909588 FORWARD LENGTH=1544 Length=1544 Score = 243 bits (131), Expect = 5e-63 Identities = 287/362 (79%), Gaps = 12/362 (3%) Strand=Plus/Plus Query 1 ATGTATTCTCTGATACACCATGGAAGAAGGTTGGTCCAGTTGGAGAAATTGCCTAATTTC 60 |||||||||||||| | |||||||||||| |||||| |||| |||||| || | |||| Sbjct 118 ATGTATTCTCTGATTCGCCATGGAAGAAGTTTGGTCGAGTTACAGAAATGGCGTCATTTG 177 Query 61 AGAGTTTCAGTGCAAACCGCATCTTCTTTGTCAAATTCGTTCTCTTTTACTAGTGTTGCT 120 ||||||| |||||||| || ||| ||||||| ||||| ||||| | | || || ||| Sbjct 178 AGAGTTTTAGTGCAAAAGGCGTCTCCTTTGTCCAATTCCTTCTCCTCTGCTTCTGCTGC- 236 Query 121 G-ATGCGAG-CCTTAGAGATGGTCTTAAAGGGAACAACTTTACCA-TCTCTTACCTCGTT 177 | | ||| || ||||| ||||| ||||| || | ||||| || |||||||||||||| Sbjct 237 GCGTTTGAGTCC-TAGAGTTGGTCGAAAAGGTAAGAGCTTTA-CAGTCTCTTACCTCGTT 294 Query 178 GATTCATTGGGTTTAACCACAAAA-CTCGCAGAATCGATCTCAAAGAAAGTCAGCCTCGA 236 ||||||||||||||| ||| |||| ||||| |||||| |||||| ||| || ||| |||| Sbjct 295 GATTCATTGGGTTTACCCA-AAAAGCTCGCTGAATCGGTCTCAAGGAAGGTTAGCTTCGA 353 Query 237 GGACAAGGAAAATCCGGATTCTGTTGTGAGTCTTCTT-ACAAGTTATGGCTTCACAAAGT 295 ||||||||| || || || |||||| ||| |||| || | |||| |||| ||||| | | Sbjct 354 GGACAAGGACAACCCTGACTCTGTTCTGAATCTT-TTGAGAAGTCATGGGTTCACTGATT 412 Query 296 CTCAGATTTCAAGTATCATTACGGATCACCCACGATTGCTTATAT-TACATGCTGACAAA 354 ||||||| || | ||| |||||||| | |||| ||||||| || | ||||||| ||| Sbjct 413 CTCAGATCTCCACCATCGTTACGGATTATCCACAATTGCTTGTAGCTG-ATGCTGAGAAA 471 Query 355 TC 356 || Sbjct 472 TC 473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65863115040 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5