BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315208

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61688.1 | Symbols:  | Defensin-like (DEFL) family protein |...   361    3e-99


> AT1G61688.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:22780733-22781388 REVERSE LENGTH=413
Length=413

 Score =  361 bits (195),  Expect = 3e-99
 Identities = 277/314 (88%), Gaps = 16/314 (5%)
 Strand=Plus/Plus

Query  1    ATGGCTAACACCCCAAAAATTCTAATCGCATTTGTTTTCAGTGTTATTTTCATCATATCT  60
            |||||||||||||||||||  |||||||||||||||||||| |||||| |||||||||||
Sbjct  36   ATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCAGCGTTATTGTCATCATATCT  95

Query  61   TATGTTCATTGTCATACAACAATTGCAAGTGTCCC-AGC-G-GGTGGA-C--CAACATAC  114
            ||||||||||||||||||||||||||||||| ||| ||| | |||| | |  ||||||||
Sbjct  96   TATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCAGTGGTGAACCAACAACATAC  155

Query  115  GCAACAGGTCCTGAACTTGCGGATTCGGAGTACCCGCACAAGC-ACGATGGGACTTGCTT  173
            ||||||||||||| || |     |||| || || ||||| | | ||||||||| ||||||
Sbjct  156  GCAACAGGTCCTGCAC-T-----TTCGAAGCACTCGCACGA-CAACGATGGGATTTGCTT  208

Query  174  CGAT-ACACCAGCGTGTTATGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTACTGTC  232
            || | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  209  CG-TAACACCAGCGTGTTTTGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTC  267

Query  233  ACGAAGCCCATTATAATCATTACAAATGTATCAAAAGAACATGTTGTTGTTATAATAGAG  292
            ||||| |||||||||| |||||||||||| | || ||| |||||||||||||||||| ||
Sbjct  268  ACGAATCCCATTATAAACATTACAAATGTGTTAATAGATCATGTTGTTGTTATAATACAG  327

Query  293  ATAAGAATGCGTCC  306
            ||||||||||||||
Sbjct  328  ATAAGAATGCGTCC  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5