BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315221
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61560.1 | Symbols: MLO6, ATMLO6 | Seven transmembrane MLO f... 2645 0.0
> AT1G61560.1 | Symbols: MLO6, ATMLO6 | Seven transmembrane MLO
family protein | chr1:22708697-22712044 REVERSE LENGTH=1942
Length=1942
Score = 2645 bits (1432), Expect = 0.0
Identities = 1658/1766 (94%), Gaps = 19/1766 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATCAAGTTAAAGAAAAGACATTAGAGGAAACTTCTACATGGGCCGTTGCGGTG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 13 ATGGCGGATCAAGTTAAAGAAAAGACATTGGAGGAAACTTCTACATGGGCCGTCGCGGTG 72
Query 61 GTTTGCTTCGTCTTGCTTTTGATTTCGATTGTTATTGAGAAACTTATTCATAAACTTGGA 120
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||
Sbjct 73 GTTTGCTTCGTCTTGCTTCTGATTTCGATCGTTATTGAAAAACTTATTCATAAAATTGGA 132
Query 121 TCCTGGTTT-AAGAGTAAGAACAAAAAAGCTCTATATGAAGCACTTGAAAAAGTGAAAGC 179
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 TCCTGGTTTAAAAAG-AAGAACAAAAAAGCTCTATATGAAGCACTTGAAAAAGTGAAAGC 191
Query 180 AGAGCTTATGCTGATGGGATTCATATCACTACTTCTAACAATTGGACAAGGATATATCTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AGAGCTTATGCTGATGGGATTCATATCACTACTTCTAACAATTGGACAAGGATATATCTC 251
Query 240 AAATATTTGCATACCTAAGAACATCGCAGCATCGATGCACCCTTGTAGTGCATCCGAAGA 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AAATATTTGCATCCCTAAGAACATCGCAGCATCGATGCACCCTTGTAGTGCATCCGAAGA 311
Query 300 GGCGAGAAAGTACGGTAAGAAAGATGCTGC-AAAGAAAGACGGAGAAGATGGAGAAAATT 358
|| |||||||| ||||||||||||| | | |||| |||| | |||||| | || ||
Sbjct 312 AGCAAGAAAGTATGGTAAGAAAGATG-TCCCAAAGGAAGATGAAGAAGA---A-AAC-TT 365
Query 359 CGCGTCGAAAGCTTCTACAGTTAGTTGATTCTCTTATTCCTCGAAGGAGTTTGGCTACCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 366 -GCGTCGAAAGCTTCTACAGTTAGTTGATTCTCTTATTCCTCGAAGGAGTTTGGCTACTA 424
Query 419 AAGGTTATGACAAGTGTGCAGAGAAGGGAAACGTAGCTTTTGTATCGGCTTATGGTATGC 478
|||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 425 AAGGTTATGATAAGTGTGCAGAGAAGGGAAAAGTCGCTTTTGTATCGGCTTATGGCATGC 484
Query 479 ATCAGCTGCATATATTCATATTTGTTCTTGCGGTTTGTCATGTGATCTACTGCATTGTCA 538
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 485 ATCAGCTGCATATATTCATCTTTGTTCTTGCGGTTTGTCATGTGATCTACTGCATTGTTA 544
Query 539 CTTATGCTTTAGGCAAGACCAAGATGAGAAGGTGGAAGA-GATGGGAAGAGGAGACGAAG 597
|||||||||| || |||||||| |||||||||||||||| | |||||||||||||| |||
Sbjct 545 CTTATGCTTTGGGAAAGACCAAAATGAGAAGGTGGAAGAAG-TGGGAAGAGGAGACTAAG 603
Query 598 ACAATCGAATATCAGTATTCACACGATCCCGAGAGGTTTAGATTTGCGAGGGATACATCT 657
|| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 604 ACTATCGAATATCAGTATTCACACGATCCCGAGAGGTTTAGGTTTGCGCGGGATACATCT 663
Query 658 TTCGGGCGTAGACATCTAAATTTCTGGAGCAAATCGACTATTACGCTGTGGATTGTATGT 717
||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 664 TTCGGGCGTAGACATCTGAGTTTCTGGAGCAAATCAACTATTACGCTGTGGATTGTATGT 723
Query 718 TTCTTCAGACAGTTCTTTAGATCTGTAACCAAAGTTGATTACTTAACACTGAGACATGGT 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TTCTTCAGGCAGTTCTTTAGATCTGTAACCAAAGTTGATTACTTAACACTGAGACATGGT 783
Query 778 TTCATCATGGCCCATTTGGCTCCCGGGAGCGACGCAAGATTCGATTTCCGAAAGTATATT 837
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 784 TTCATCATGGCCCATTTGGCTCCTGGGAGCGACGCAAGGTTCGATTTCCGAAAGTATATT 843
Query 838 CAGAGATCATTAGAGGAAGACTTCAAAACCATTGTCGAGATCAATCCTGTGATCTGGTTC 897
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 844 CAGAGATCACTAGAGGAAGACTTCAAAACCATTGTCGAGATCAACCCTGTGATCTGGTTC 903
Query 898 ATCGCCGTGTTATTCCTACTGACAAACACACACGGATTGCATTCTTACCTCTGGTTACCG 957
|| || ||| ||||||| |||||||||||| |||||||| |||||||||||||| |||||
Sbjct 904 ATAGCTGTGCTATTCCTCCTGACAAACACAAACGGATTGAATTCTTACCTCTGGCTACCG 963
Query 958 TTCATTCCATTCGTCGTGATTCTTATTGTTGGGACAAAACTTCAAGTGATAATAACAAAA 1017
|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 964 TTCATTCCCTTCATCGTGATTCTTATTGTTGGAACAAAACTTCAAGTGATAATAACAAAA 1023
Query 1018 CTGGGACT-ACGAATCCAAGAGAAAGGTGACGTAGTGAAAGGCACACCGCTAGTTCAGCC 1076
|| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1024 CTAGGACTTA-GAATCCAAGAGAAAGGCGACGTAGTGAAAGGCACACCGCTAGTTCAACC 1082
Query 1077 CGGTGATCATTTCTTCTGGTTCGGTCGCCCACGTTTCATTCTCTTCCTCATTCACTTAGT 1136
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1083 CGGTGATCATTTCTTCTGGTTCGGTCGTCCACGTTTCATTCTCTTCCTCATTCACTTAGT 1142
Query 1137 CCTCTTCACGAACGCGTTTCAACTCGCTTTCTTTGCCTGGAGTACGTATGAATTCGGTCT 1196
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1143 CCTCTTCACGAACGCGTTTCAACTAGCTTTCTTTGTCTGGAGTACGTATGAATTCGGTCT 1202
Query 1197 AAAGAACTGTTTCCATGAAAGCAGAGTAGATGTGATCATCAGAATCTCAATCGGACTTAT 1256
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
Sbjct 1203 AAAGAACTGTTTCCATGAAAGCAGAGTTGACGTGATCATCAGAATCTCAATCGGACTTTT 1262
Query 1257 AGTCCAGATTCTTTGCAGCTACGTTACTCTTCCTCTATATGCTCTCGTTACTCAAATGGG 1316
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1263 AGTTCAGATTCTTTGCAGCTACGTTACTCTTCCTCTATATGCTCTTGTTACTCAAATGGG 1322
Query 1317 TTCAAAGATGAAGCCAACAGTATTCAACGAGAGAGTAGCAACGGCATTAAAGAGTTGGCA 1376
|||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1323 TTCAAAGATGAAACCAACAGTGTTCAACGAGAGAGTAGCAACAGCGTTAAAGAGTTGGCA 1382
Query 1377 TCACACAGCAAAGAAACAGATCAAACATGGAAGAACTTCAGAATCAACAACACCTTTCTC 1436
||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 TCACACAGCTAAGAAAAATATCAAACATGGAAGAACTTCAGAATCAACAACACCTTTCTC 1442
Query 1437 TAGCCGACCAACAACACCAACACATGGTTCTTCTCCGATTCATCTTCTCCGAAATGCCCC 1496
||| |||||||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct 1443 TAGTAGACCAACAACACCAACTCATGGTTCTTCTCCGATTCATCTCCTTCGTAATGCTCC 1502
Query 1497 CCACAAACGAAGCAGAAGCGTCGACGAAAGCTTCGCGAATTCGATGTCTCCTAGAAACTC 1556
|||||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||||||
Sbjct 1503 TCACAAACGAAGCAGAAGCGTTGACGAAAGCTTTGCGAATTCGTTTTCTCCGAGAAACTC 1562
Query 1557 TGATTTCGATTCATGGGATCCTGAATCTCAACACGAAG-TAGCTGAGACTTCGAATTCAA 1615
|||||||||||| ||||||||||| |||||||| ||| | ||||||||||||||||| |
Sbjct 1563 TGATTTCGATTCGTGGGATCCTGAGTCTCAACATGAAACT-GCTGAGACTTCGAATTCGA 1621
Query 1616 ATCATCGTTCTAGGGTTGGAGAAGAAGAGTCGGAGAAAAAGTTTGTTTCTTCATCATCTG 1675
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1622 ATCATCGTTCTAGGTTTGGAGAAGAAGAATCGGAGAAAAAGTTTGTTTCTTCATCA---G 1678
Query 1676 TGGAACTTCCTCCAGGACCTGGACAAATACGAACACAGCATGAGATTAGTACTATTAGCT 1735
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1679 TGGAACTTCCTCCTGGACCTGGACAAATACGAACACAGCATGAGATTAGTACTATAAGCT 1738
Query 1736 TAAGGGATTTTTCGTTTAAACGATGA 1761
||||||||||||||||||| ||||||
Sbjct 1739 TAAGGGATTTTTCGTTTAAGCGATGA 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5