BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315222
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61540.1 | Symbols: | Galactose oxidase/kelch repeat superf... 889 0.0
AT1G61542.1 | Symbols: | pseudogenen of kelch repeat-containin... 315 8e-85
AT1G61550.1 | Symbols: | S-locus lectin protein kinase family ... 263 3e-69
AT4G39580.1 | Symbols: | Galactose oxidase/kelch repeat superf... 97.1 3e-19
AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 71.3 2e-11
> AT1G61540.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:22702498-22703706 FORWARD LENGTH=1209
Length=1209
Score = 889 bits (481), Expect = 0.0
Identities = 647/725 (89%), Gaps = 19/725 (3%)
Strand=Plus/Plus
Query 10 CCGTCTCCGTCTCCGGTGACAGAAGAACC-ATCATCGATCATGTCACTTCCTTATGACTT 68
|||| ||| |||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 43 CCGTATCCTTCTCCGGTGACAGAAGAACCAATC-TCTATCATGTCACTTCCTTATGACTT 101
Query 69 GTTGTTCAACTGCTT-TGCACGCGTCTCTAGATTGTACTATCCAACTCTCTCCCTCGTTT 127
||| || |||||||| | ||| |||||| || ||||| ||||||||||||||||||||||
Sbjct 102 GTTATTGAACTGCTTCT-CACTCGTCTCAAGGTTGTATTATCCAACTCTCTCCCTCGTTT 160
Query 128 CCAAAACTTTCCGATCCATTGTTTA-TTCATCG-GAGCTTTACGAGACCCGATCACGCTC 185
|||||||||| ||||| | | ||| |||| || || |||||||||| |||||||||||
Sbjct 161 CCAAAACTTTTCGATCTA-TCATTACTTCA-CGCGAACTTTACGAGATCCGATCACGCTT 218
Query 186 AAGCCGTACGGAGGAGTGTCTCTATCTTTGCTTACACTACCCTTCCGACACT-AACACTT 244
|| ||||||||| ||||||||||||||||| | | ||||| ||||| | |||||
Sbjct 219 AAACCGTACGGATAAGTGTCTCTATCTTTGC-T----T-CCCTTACGACA-TGAACACGC 271
Query 245 ATTGGGTCACTCTGTACCGGAAACCTAATGGAAACGTAGCTGACAAGTCAAGTGGCTATC 304
||||| ||||||| | |||| |||||||| ||||||| || || || |||||||||||||
Sbjct 272 ATTGGTTCACTCTCTGCCGGGAACCTAATCGAAACGTTGCCGAGAATTCAAGTGGCTATC 331
Query 305 TTCTGGTCCAAGTTCCATCTCCCAATTGTTTGCTTCCTGCACAGTCGTCGAGTGTCATAG 364
|||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||
Sbjct 332 TTCTGGTCCAAGTTCCATCTCCCAATGGTTTACTTCCTGTGCATTCGTCGAGTGTCATAG 391
Query 365 CCGTTGGTTCTAATATCTACAAAATCGGCGGCGCTAAATCTTATAGATACAAATTCTGGA 424
|||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||
Sbjct 392 CCGTTGGTTCTAATATCTACAAAATCGGCGGCACTAAGTCTTATAGACACAAACTCTGGA 451
Query 425 A--G-ACGCGCTATTCTTCTTCTGTCTCAGTCCTGGATTGTCGGAGTCACAGGTGGCGTC 481
| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 452 AAAGGACGCGCTATTCTTCTTCTGTCTCTGTCCTGGATTGTCGGAGTCACAGGTGGCGTC 511
Query 482 ATGCTCCAGGTATGCGAGTGGCCCGGAGCTCTTCCTCCACAGTATGCGAAGTTGATGGGA 541
| |||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 512 AGGCTCCAGGAATGCGAGTGGCCCGGGGCTGTTCCTCCACAGTATGTGAAGTTGATGGGA 571
Query 542 AGATATATGTAGCAGGAGGCTGTAAAGACGACATCTGTTCCTTGTACTGGATGGAAGTGT 601
|||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 572 AGATATATATAGCAGGAGGCTGTAAAGAAGACATCGGTTCCTTGTACTGGATTGAAGTGT 631
Query 602 TTGATCCAAAGACTCAAACTTGGGGCACTTTGAAGAACCCAAGCATCGAGTATCAAAATG 661
|||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||| |||
Sbjct 632 TTGATCCAAAAACTCAAACTTGGGGCACTCTGAAGAACCCATGCATTGAGTATCAACATG 691
Query 662 ATATTGGATATACAAGTGTAGTCAAAAGCTTAGGTCTTGATGGAAAATTATACATGTTTG 721
|||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 692 ATATTGGATATAGATGTGAAGTCAAAAGCTTAGGTCTTGATGGAAAAATATACATGTTTG 751
Query 722 GAAGT 726
|||||
Sbjct 752 GAAGT 756
Score = 130 bits (70), Expect = 3e-29
Identities = 200/258 (78%), Gaps = 27/258 (10%)
Strand=Plus/Plus
Query 823 GTGTTTAAATGGTATGA-TTCTAAGGCAAGGTTATGGAAGAAACTGAATGGTGTTGAAGG 881
||||| ||||||||||| || ||||| ||| || |||||| || ||||||||||||||||
Sbjct 910 GTGTTCAAATGGTATGACTT-TAAGGTAAGTTTGTGGAAGGAATTGAATGGTGTTGAAGG 968
Query 882 ATTGCCTGATTTTTGTCAT--TG--T-T-T-AA--TGGTGGATGTTGGTGGGAAGAT-GA 931
|||||||||||| || | || | | | || |||||||| ||||||| ||||| |
Sbjct 969 ATTGCCTGATTTAAGTGACCGTGGGTATGTTAAAATGGTGGATCTTGGTGGAAAGATAGC 1028
Query 932 TGGTTTTGTGGGATGAGTTTGTGTATTATTCCACTAGATTTCAGGAGAATGTGATTTGGT 991
|||||||||| | |||| | || | || | | | ||| | | || | ||||||||
Sbjct 1029 -GGTTTTGTGGCAAGAGTGTCTG-ACTAATA-AGAAAATT--A--A-AA-G-GATTTGGT 1078
Query 992 GTGCGGAGATTTCGC-TTGAAAGAAGAGGTGATGGAGATGAGATTTGGGGGAAAGTTGAG 1050
|||| |||||| || |||||||| | | | | | |||||||||||||||||| ||||||
Sbjct 1079 GTGCTGAGATTA-GCCTTGAAAGACGCGAT-A-G-AGATGAGATTTGGGGGAAGGTTGAG 1134
Query 1051 TGGTTTGATGCTGTGCTT 1068
||||||||| |||||||
Sbjct 1135 TGGTTTGATATTGTGCTT 1152
> AT1G61542.1 | Symbols: | pseudogenen of kelch repeat-containing
F-box family protein | chr1:22704010-22704396 FORWARD LENGTH=264
Length=264
Score = 315 bits (170), Expect = 8e-85
Identities = 208/227 (92%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 899 ATTGTTTAATGGTGGATGTTGGTGGGAAGATGATGGTTTTGTGGGATGAGTTTGTGTATT 958
||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 38 ATTGTTTAATGGTGGATGTTGGTGGGAAGATGATGGTGTTGTGGGATGCGTCTGTGTATT 97
Query 959 ATTCCACTAGATTTCAGGAGAATGTGATTTGGTGTGCGGAGATTTCGCTTGAAAGAAGAG 1018
|||| | |||| | | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 98 ATTCAAGTAGACGTAAAGAGAATGTGATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGTG 157
Query 1019 GTGATGGAGATGAGATTTGGGGGAAAGTTGAGTGGTTTGATGCTGTGCTTCCAGTCCATA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 158 GTGATGGAGATGAGATTTGGGGGAAAGTTGAGTGGTTTGATGCTGTGCTTCCAGTCCACA 217
Query 1079 AATCTTGTCACTTGGTGTATGCGGCTGGTCTCTCTGCTACTCTTTGA 1125
| ||||||| ||| ||||||||| |||||| |||||||||||||||
Sbjct 218 AGTCTTGTCGTTTGTTGTATGCGGATGGTCTTTCTGCTACTCTTTGA 264
> AT1G61550.1 | Symbols: | S-locus lectin protein kinase family
protein | chr1:22704198-22707826 REVERSE LENGTH=2982
Length=2982
Score = 263 bits (142), Expect = 3e-69
Identities = 180/199 (90%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 927 GATGATGGTTTTGTGGGATGAGTTTGTGTATTATTCCACTAGATTTCAGGAGAATGTGAT 986
||||||||| |||||||||| || |||||||||||| | |||| | | |||||||||||
Sbjct 2982 GATGATGGTGTTGTGGGATGCGTCTGTGTATTATTCAAGTAGACGTAAAGAGAATGTGAT 2923
Query 987 TTGGTGTGCGGAGATTTCGCTTGAAAGAAGAGGTGATGGAGATGAGATTTGGGGGAAAGT 1046
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2922 TTGGTGTGCGGAGATTTCGCTTGAAAGGCGTGGTGATGGAGATGAGATTTGGGGGAAAGT 2863
Query 1047 TGAGTGGTTTGATGCTGTGCTTCCAGTCCATAAATCTTGTCACTTGGTGTATGCGGCTGG 1106
|||||||||||||||||||||||||||||| || ||||||| ||| ||||||||| |||
Sbjct 2862 TGAGTGGTTTGATGCTGTGCTTCCAGTCCACAAGTCTTGTCGTTTGTTGTATGCGGATGG 2803
Query 1107 TCTCTCTGCTACTCTTTGA 1125
||| |||||||||||||||
Sbjct 2802 TCTTTCTGCTACTCTTTGA 2784
> AT4G39580.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18385684-18386811 REVERSE LENGTH=1128
Length=1128
Score = 97.1 bits (52), Expect = 3e-19
Identities = 81/94 (86%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 533 TTGATGGGAAGATATATGTAGCAGGAGGCTGTAAAGAC-GACATCTGTTCCTTGTACTGG 591
|||||||||||||||||||||||||||||||| |||| | || || | | ||| | ||
Sbjct 527 TTGATGGGAAGATATATGTAGCAGGAGGCTGTGAAGATTG-CA-CT-T-CATTGGATTGT 582
Query 592 ATGGAAGTGTTTGATCCAAAGACTCAAACTTGGG 625
|| |||||||||||||| ||||||||||||||||
Sbjct 583 ATAGAAGTGTTTGATCCTAAGACTCAAACTTGGG 616
> AT3G09915.1 | Symbols: | pseudogene, hypothetical protein |
chr3:3039015-3040186 REVERSE LENGTH=1172
Length=1172
Score = 71.3 bits (38), Expect = 2e-11
Identities = 82/101 (81%), Gaps = 12/101 (12%)
Strand=Plus/Plus
Query 984 GATTTGGTGTGCGGAGATTTCGCTTGAAAGAAG-AGGTGATG-GAGATGAGATTTGGGGG 1041
||||||||||||||||||||||||||||||||| | | || || | || ||||||
Sbjct 1044 GATTTGGTGTGCGGAGATTTCGCTTGAAAGAAGCAAAAGTTGCGA-A--AGTTTTGGG-- 1098
Query 1042 AAAGTTGAGTGGTTTGATGC-TGTGCTTCCAGT-CCATAAA 1080
|| ||||| ||||||||| | ||||||| |||| || ||||
Sbjct 1099 AA-GTTGAATGGTTTGAT-CATGTGCTTACAGTGCC-TAAA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5