BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315228
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61290.1 | Symbols: SYP124, ATSYP124 | syntaxin of plants 12... 1524 0.0
AT1G11250.1 | Symbols: SYP125, ATSYP125 | syntaxin of plants 12... 773 0.0
> AT1G61290.1 | Symbols: SYP124, ATSYP124 | syntaxin of plants
124 | chr1:22605009-22606216 FORWARD LENGTH=1091
Length=1091
Score = 1524 bits (825), Expect = 0.0
Identities = 883/912 (97%), Gaps = 0/912 (0%)
Strand=Plus/Plus
Query 1 ATGAATGATTTATTCTCTAGTTCGTTCAAGAAGTACACGGACCTGAAGCAACAGGCCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATGAATGATTTATTCTCTAGTTCGTTCAAGAAGTACACGGACCTGAAGCAACAGGCCCAA 239
Query 61 ATGGATGATGTTGAGGCAGGTAAAGAGACGATGAACCTCGATAAATTCTTTGAGGATGTC 120
||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 ATGGATGATATTGAGTCAGGTAAAGAGACGATGAACCTCGATAAGTTCTTTGAGGATGTC 299
Query 121 GAAAATGTCAAAGATGACATGAAAGCCGTAGAGACTCTTTACAAAAGCCTTCAGGATTCG 180
||||||||||||||| ||||||||| |||||||||||||||||| || |||||||||||
Sbjct 300 GAAAATGTCAAAGATAACATGAAAGGCGTAGAGACTCTTTACAAGAGTCTTCAGGATTCT 359
Query 181 AACGAAGAATGCAAAACGGTACACAATGCCAAGAAAGTGAAGGAACTCCGAGCAAAGATG 240
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 AACGAAGAGTGCAAAACTGTACACAATGCCAAGAAGGTGAAGGAACTCCGAGCAAAGATG 419
Query 241 GATGGAGATGTCGCTCAGGTCCTCAAGAGAGTCAAGATCATCAAACAAAAGCTTGAGGCG 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GATGGAGATGTCGCTCAGGTCCTCAAGAGAGTCAAGATGATCAAACAAAAGCTTGAGGCG 479
Query 301 CTTGAAAAAGCGAATGCTAATAGCCGTAATGTCCCTGGTTGTGGCCCTGGCTCTTCCACC 360
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 CTTGAAAAAGCAAATGCTAATAGCCGTAATGTCTCTGGTTGTGGCCCTGGCTCTTCCACC 539
Query 361 GATAGGACCAGGACGTCTGTTGTTAGCGGACTCGGGAAAAAGCTTAAGGACTTGATGGAT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 GATAGGACCAGGACGTCTGTTGTTAGTGGACTCGGGAAAAAGCTTAAGGACTTGATGGAT 599
Query 421 AGTTTTCAAGGTCTGCGTGCGCGGATGAATGCTGAGTATAAAGAAACCGTAGAACGCAGA 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 600 AGTTTTCAAGGTCTGCGTGCGCGGATGAACGCTGAGTATAAAGAAACCGTAGAGCGCAGA 659
Query 481 TATTTCACGATAACCGGAGAACAGGCAGACGAACAGACGATTGAGAACTTGATTTCGAGC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TATTTCACGATAACCGGAGAACAGGCAGACGAACAGACGATTGAGAACTTGATTTCGAGT 719
Query 541 GGTGAAAGCGAGAATTTTCTTCAGAAAGCGATACAAGAACAAGGGAGAGGCCAAATATTA 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 GGTGAAAGCGAGAATTTTCTTCAGAAAGCAATACAAGAACAAGGGAGAGGCCAAATATTA 779
Query 601 GACACCATATCAGAGATTCAAGAGAGGCACGACGCAGTGAAAGAGATAGAGAAGAATCTT 660
||||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 780 GACACTATATCAGAGATTCAAGAGAGACACGACGCGGTCAAAGAGATAGAGAAGAATCTT 839
Query 661 ATAGAGCTTCACCAAGTGTTCCTAGACATGGCGGCTCTGGTGGAAGCACAAGGTCAGCAA 720
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 840 ATAGAGCTTCACCAAGTGTTCTTAGACATGGCGGCTCTGGTGGAATCACAAGGTCAGCAA 899
Query 721 CTAAATGACATAGAAAGCCACGTGTCAAAGGCGAGCTCGTTCGTGAGAAGAGGGACAGAC 780
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 900 CTAAATGACATAGAAAGCCACGTCTCGAAGGCGAGCTCGTTCGTGAGAAGAGGGACAGAC 959
Query 781 CAGCTTCAAGATGCAAGAGAGTACCAAAAGAGCTCGAGGAAATGGACTTGTTATGCCATT 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAGCTTCAAGATGCAAGAGAATACCAAAAGAGCTCGAGGAAATGGACTTGTTATGCCATT 1019
Query 841 CTTCTCTTCATAGTCGTTTTCGCTTTGCTTCTCATACCAGCCTTGCCTCATATCATGCTC 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1020 CTTCTCTTCATAGTCGTTTTCGCTTTGCTTCTCATACCAGCCTTACCTCATATCATGCTC 1079
Query 901 ATGTTGAAGTGA 912
||||||||||||
Sbjct 1080 ATGTTGAAGTGA 1091
> AT1G11250.1 | Symbols: SYP125, ATSYP125 | syntaxin of plants
125 | chr1:3768724-3769706 FORWARD LENGTH=897
Length=897
Score = 773 bits (418), Expect = 0.0
Identities = 730/880 (83%), Gaps = 24/880 (3%)
Strand=Plus/Plus
Query 45 GAAGCAA-CAGGCCCAAATGGATGATGTTGAGGCAGGTAAAGAGACGATGAACCTCGATA 103
|||| || ||||| ||| ||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 30 GAAG-AACCAGGCTCAACTGGGGGATGTTGAGGCAGGTCAAGAAACGATGAACCTCGATA 88
Query 104 AATTCTTTGAGGATGTCGAAAATGTCAAAGATGACATGAAAGCCGTAGAGACTCTTTACA 163
||||||| ||||||||||| ||||| || || |||||||||| || ||| ||||||| |
Sbjct 89 AATTCTTCGAGGATGTCGAGAATGTGAAGGACGACATGAAAGGAGTCGAGGCTCTTTATA 148
Query 164 A-AAGCCTTCAGGATTCGAACGAAGAATGCAAAACGGTACACAATGCCAAGAAAGTGAAG 222
| ||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||
Sbjct 149 AGAAG-CTTCAAGACTCAAACGAGGAGTGCAAGACGGTTCACAATGCCAAGAAGGTTAAA 207
Query 223 GAACTCCGAGCAAAGATGGATGGAGATGTCGCTCA-GGTCCTCAAGAGAGTCAAGATCAT 281
|| || ||||| |||||||||||||| || || | |||||| ||||| || || |||||
Sbjct 208 GAGCTACGAGCTAAGATGGATGGAGACGTAGC-AATGGTCCTTAAGAGGGTTAAAATCAT 266
Query 282 CAAACAAAAGCTTGAGGCGCTT-GAAAAAGCGAATGCTAATAGCCGTAATGTCCCTGGTT 340
||| || ||||| || || ||| || ||||||||||||||||||||||||||||||||||
Sbjct 267 CAAGCAGAAGCTCGAAGC-CTTAGAGAAAGCGAATGCTAATAGCCGTAATGTCCCTGGTT 325
Query 341 GTGGCCCTGGCTCTTCCACCGATAGGAC-CAGGA-CGTCTGTTGTTAGCGGACTCGGGAA 398
|||| ||||| || || || |||||||| | | | | ||||| |||||||| ||||||||
Sbjct 326 GTGGGCCTGGTTCGTCTACGGATAGGACTC-G-ATCTTCTGTGGTTAGCGGTCTCGGGAA 383
Query 399 AAAGCTTAAGGACTTGATGGATAGTTTTCAAGGTCTGCGTGCGCGGATGAATGCTGAGTA 458
||||| || |||||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 384 GAAGCTCAAAGACTTGATGGATAGTTTTCAAGGTCTACGTGCTCGTATGAACAATGAGTA 443
Query 459 TAAAGAAACCGTAGAACGCAGATATTTCACGATAACCGGAGAACAGGCAGACGAACAGAC 518
||| ||||||||||| ||||| |||||||| ||||| |||||| | |||||||| || ||
Sbjct 444 TAAGGAAACCGTAGAGCGCAGGTATTTCACAATAACAGGAGAAAAAGCAGACGAGCAAAC 503
Query 519 GATTGAGAACTTGATTTCGAGCGGTGAAAGCGAGAATTTTCTTCAGAAAGCGATACAAGA 578
|| || |||||||| |||||||||| |||||||||||||| || |||||||| |||||
Sbjct 504 AATCGATAACTTGATAGCGAGCGGTGAGAGCGAGAATTTTCTCCAAAAAGCGATTCAAGA 563
Query 579 ACAAGGGAGAGGCCAAATATTAGACACCATATCAGAGATTCAAGAGAGGCACGACGCAGT 638
||||| ||||| ||||| ||||||| ||||| ||||| || ||||| || || |||||
Sbjct 564 GCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAGATCCAGGAGAGACATGATGCAGT 623
Query 639 GAAAGAGATAGAGAAGAATCTTA-TAGAGCTTCACCAAGTGTTCCTAGACATGGCGGCTC 697
||| ||||||||||||||||| | | ||||| ||||| || ||| | |||||||| ||||
Sbjct 624 GAAGGAGATAGAGAAGAATCT-ACTGGAGCTGCACCAGGTTTTCTTGGACATGGCAGCTC 682
Query 698 TGGTGGAAGCACAAGGTCAGCAACTAAATGACATAGAAAGCCACGTGTC-AAAGGCGAGC 756
| || ||||| ||||| || ||| |||| ||||||| ||||| ||| | |||| |||||
Sbjct 683 TAGTAGAAGCGCAAGGGCAACAATTAAACAACATAGAGAGCCATGTGGCGAAAG-CGAGC 741
Query 757 TCGTTCGTGAGAAGAGGGACAGACCAGCTTCAAGATGCAAGAGAGTACCAAAAGAGCTCG 816
||||| |||||||||||||| || ||||| |||||||| || || |||||||||||||||
Sbjct 742 TCGTTTGTGAGAAGAGGGACTGATCAGCTCCAAGATGCGAGGGAATACCAAAAGAGCTCG 801
Query 817 AGGAAATGGACTTGTTATGCCATTCTTC-TCTTCATAGTCGT-TTTCGCTTTGCTTCTCA 874
||||||||||||||||| ||||| | || ||||||| ||| | ||| | | |||||||
Sbjct 802 AGGAAATGGACTTGTTACGCCAT-CATCCTCTTCATCGTCATCTTTATCCTC-CTTCTCA 859
Query 875 TACCAGCCTTG--CCTCATATCATGCTCATGTTGAAGTGA 912
| || |||| ||||| || ||||||||||||||||||
Sbjct 860 TTCC--CCTTCTACCTCACATAATGCTCATGTTGAAGTGA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5