BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315244
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61110.1 | Symbols: anac025, NAC025 | NAC domain containing ... 1543 0.0
> AT1G61110.1 | Symbols: anac025, NAC025 | NAC domain containing
protein 25 | chr1:22516602-22518287 FORWARD LENGTH=1332
Length=1332
Score = 1543 bits (835), Expect = 0.0
Identities = 934/981 (95%), Gaps = 9/981 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAACATGGGGGATTCGAGCATAGGGCCGGGCCATCCGCATCTCCCTCCCGGGTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 ATGGAAAACATGGGGGATTCGAGCATAGGGCCGGGCCATCCGCATCTCCCTCCCGGGTTT 188
Query 61 CGGTTTCACCCGACTGATGAGGAACTAGTGGTTCATTACCTCAAGAAGAAAGCTGCTTCT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 189 CGGTTTCACCCGACTGATGAGGAACTAGTAGTTCATTACCTCAAGAAGAAAGCAGATTCT 248
Query 121 GTTCCACTTCCGGTCTCAATCATCGCCGAGATTGATCTTTACAAGTTCGATCCTTGGGAA 180
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 249 GTTCCACTTCCAGTCTCAATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAG 308
Query 181 CTTCCAAGCAAAGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGG 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CTTCCAAGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGG 368
Query 241 AAGTATCCGAATGGTGTTAGACCAAACCGTGCAGCAACTTCCGGTTATTGGAAAGCAACG 300
|||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 369 AAGTATCCAAATGGGGTTAGGCCAAACCGGGCAGCAACTTCCGGTTATTGGAAAGCAACG 428
Query 301 GGAACAGATAAACCGATATTTACGTGCAATAGTCACAAGGTTGGTGTCAAGAAAGCGCTA 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GGAACCGATAAACCGATATTTACGTGCAATAGTCACAAGGTTGGTGTCAAGAAAGCGCTT 488
Query 361 GTGTTTTATGGTGGAAAACCTCCTAAAGGGATCAAAACAGATTGGATCATGCATGAATAT 420
|| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 489 GTTTTTTACGGTGGAAAGCCTCCTAAAGGGATAAAAACAGATTGGATCATGCATGAATAT 548
Query 421 CGCCTCACTGATGGTAACCTAAGCACTGCGGCTAAGCAGCCTGACTTAGCCACGACAAGG 480
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 549 CGCCTCACTGATGGTAACCTTAGCACTGCGGCTAAGCCGCCTGACTTAACCACGACAAGG 608
Query 481 AAAAACTCACTACGGCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AAAAACTCACTACGGCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCA 668
Query 541 CAAAGACCAACAATGGAGAGAGTATTACTTAGAGAAGATCTAATGGAAGGAATGCTCTCA 600
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 669 CAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGCTCTCA 728
Query 601 AAATCATCTGCTAATTCTTCTTCCACATCAGTCCTAGacaacagcgacaacaacaataac 660
||||||||||||||||||||||| |||||||| |||||||||| ||||||||| |||
Sbjct 729 AAATCATCTGCTAATTCTTCTTCTACATCAGTACTAGACAACAACGACAACAA---TAA- 784
Query 661 aataacaacaataacGAAGAACACTTTTTTGACGGTATGGTTGTCTCTTCAGACAAACGG 720
|||||| |||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 785 --TAACAA---TAACGAAGAACACTTTTTCGACGGTATGGTCGTTTCTTCAGACAAACGT 839
Query 721 TCCTTGTGTGGTCAATACCGTATGGGTCACGAGGCCTCAGGATCATCTTCATTCGGATCT 780
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 840 TCCTTGTGTGGTCAATACCGAATGGGCCACGAGGCCTCAGGATCATCTTCATTCGGATCT 899
Query 781 TTCTTATCGAGCAAGAAGTTTCATCATACAGGTGATTTCAACAATGACAACTACAATGTC 840
|||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 900 TTCTTATCGAGCAAGAGGTTTCATCATACAGGTGATCTCAACAATGATAACTACAATGTC 959
Query 841 TCTTTTGTTTCAATGCTTAGTGAGATTCCTCAGAGTTCGGGGTTTCATGCAAATGGAGTT 900
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 960 TCTTTTGTTTCGATGCTTAGTGAGATTCCTCAGAGTTCGGGGTTTCATGCAAATGGTGTT 1019
Query 901 ATGGATACGACGTCGTCTCTAGCTGATCATGGGGTTTTAAGACAGGCGTTTCAGCTTCCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATGGATACGACGTCGTCTCTAGCTGATCATGGGGTTTTAAGACAGGCGTTTCAGCTTCCT 1079
Query 961 AACATGAACTGGCATTCATAA 981
|||||||||||||| ||||||
Sbjct 1080 AACATGAACTGGCACTCATAA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5