BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315245
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61100.1 | Symbols: | disease resistance protein (TIR class... 3432 0.0
AT1G61105.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 791 0.0
> AT1G61100.1 | Symbols: | disease resistance protein (TIR class),
putative | chr1:22508538-22512271 REVERSE LENGTH=2869
Length=2869
Score = 3432 bits (1858), Expect = 0.0
Identities = 2093/2206 (95%), Gaps = 17/2206 (1%)
Strand=Plus/Plus
Query 487 TTTGTGAGATTCGTAAACACGCCTGCGATTATCGAAAGATTTGCGACTTTGGAGAAAGAG 546
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 387 TTTGTGAGATTTGTAAACACGCCTGCGATTATCGAAAGATTTGCGACTCTGGAGAAAGAG 446
Query 547 ATTTTGCAGATTGAGAATTCTATTCAAGCTAATGAAATTGCCAACGCTGCTGCTGATCCT 606
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 447 ATTTTGCAGATTGAGAATTCTATTCAAGCTAATGAAATTGCCAA---TGCTGCTGATGCT 503
Query 607 CTGCAATTACAAGACGGGAGTAATTCTGGAGTTAGTAGTAATCTAAGGAAGTCGAATGAG 666
||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 504 CTGCAATTACAAGACGGGAGTAATTCTGGAGATAGCAGTAATCTAAAGAAGTCGAATGAG 563
Query 667 TCCTCTAAGAAAGAATCTGAGAATGGCAATGAGGTTGCAGGAGAGGAAACCTCCAAGATT 726
||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 564 TCCTCTAAGAAGGAATCTGAGAATGGCAATGAGGTGGTAGGAGAGGAAACCTCTAAGATT 623
Query 727 CAACTTCAACGTCTTCTTGAAACTAGAAGAACATTGCTTCGAAGAGAGCAAGCGATGGCG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 624 CAACTTCAACGTCTTCTTGAAACTAGAAGAACATTGCTTCGAAGAGAGCAAGCAATGGCT 683
Query 787 TATGCACGAGGGGTTGTGGCTGGTTATGAAATTGATAGTATTGATGATCTCATATTGTTT 846
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 684 TATGCACGAGGGGTTGTTGCTGGTTATGAAATTGATAGTATTGATGATCTCATTTTATTT 743
Query 847 GCTGATGCTTTTGGTGCGTCAAGGTTAAGGGAAGCATGTGTAAAATATAAAGAACTATGG 906
||||||||||| || || ||||||||||| |||||||| ||| |||||||||||||||
Sbjct 744 GCTGATGCTTTCGGGGCTTCAAGGTTAAGAGAAGCATGCATAATGTATAAAGAACTATGG 803
Query 907 AAGAAGAAGCATGGAGACGGGCTTTGGATGGCAGAATTAGCAGCTGTGAAAGCGTGTGCT 966
||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 804 AAGAAGAAGCACGGTGATGGGCTTTGGATGGCGGAATTAGCAGCTGTGAAAGCGTGTGCT 863
Query 967 CCAGTGGACATGTCATTATTGGGTTCCTCAGGGATCATCCTCAAC-AATGAAGGTGCTGC 1025
||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||
Sbjct 864 CCAGTGGACATGTCATTGTTGGGTTCCTCAGGCATCATCCTC-ACTAATGAAGGTGCTGC 922
Query 1026 TCTATCACTAAATGGGACCGAGTCAACACCATCTAATACAGATGACAAGTCAGTTAATTT 1085
|||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 923 TCTATCACTAAATGGGACAGACTCAATGCCATCTAATACAGATGACAAGTCAGTTAATTT 982
Query 1086 AGAGCAACATCCGTCCGGTGTTCCAAACTTTCAAGCACCAATGGGATGGCCGAACCATAT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 983 AGAGCAACATCCGTCCGGTGTTCCAAACTTTCAAGCACCAATGGGATGGCCAAACCATAT 1042
Query 1146 GCCTCAATACTTCTACCCGCCTCCGTACCAAGGCTATCCGTACCCTCCTATGCAGCATAT 1205
|||||||||||| |||||| |||| ||||||||||||||||||||||||||||| || ||
Sbjct 1043 GCCTCAATACTTTTACCCGTCTCCATACCAAGGCTATCCGTACCCTCCTATGCAACACAT 1102
Query 1206 GCCAAATCAAAACCAAGGAAACATGCCATGGCCTTCAAGGGGCAAACCTTCCAAGAAAAA 1265
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1103 GCCAAATCAAAACCAAGGAAACATGCCATGGCCTTCAAGGGGCAAAACATCCAAGAAAAA 1162
Query 1266 AGGGAAAGGGGATTCTGATGGAGATGAGTCTAGCGGGTCAAGTGAATCTAGTGAATCTGA 1325
|||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1163 AGGGAAGGGGGATTCTGATGGAGATGAGTCTAGTGAATCAAGTGAATCTAGTGAATCTGA 1222
Query 1326 CTCGGCCAGCGATGATTCTGCTTCATCTTTGGAAGATCAAGGTAAAAGACACTCTCGTAC 1385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 ATCGGCCAGCGATGATTCTGCTTCATCTTTGGAAGATCAAGGTAAAAGACACTCTCGTAC 1282
Query 1386 GAGTAAAAACTCTCGTCGATCAAAGAAAAACCGGAAGAAGTCATCTAAAACTGTTATCAT 1445
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 AAGTAAAAACTCACGCCGATCAAAGAAAAACCGGAAGAAGTCATCTAAAACTGTTATCAT 1342
Query 1446 CCGTAATATTAACTACATAACCCCCGAGGGAAGAAATGGAGACATGGAGGGAAATGAATT 1505
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1343 CCGTAATATTAACTATATAACCCCGGAGGGAAGAAATGGAGACATGGAGGGAAATGAGTT 1402
Query 1506 TACAGACAACGGTTCCATCAAAGAGACTGTAGATGCTGCTGTTGGAATGCTCAACGAAAA 1565
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TACGGACAACGGTTCCATCAAAGAGACTGTAGATGCTGCTGTTGGAATGCTCAACGAAAA 1462
Query 1566 AAGAGCTAATGAGGGAGAAGTCTCTGGTGAAGAAAAACGAAGCAACGAGAATTGGGATTC 1625
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1463 AAGAGCTCATGAGGGAGAAGTTTCTGGTGAAGAAAAACGAAGCAACGAGAATTGGGATTC 1522
Query 1626 ATTTCAGAATATTCTGATGAGGCACGATGATGGCTCAGATGTGCATTCGATGGATGTCGT 1685
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1523 ATTTCAGAATATTTTGATGAGGCACGATGATGGCTCAGATGTGCATTCAATGGATGTCAT 1582
Query 1686 CAATGAGGAGCATTTCACCCGTAGAGGCTCTAGTGTGGGTGCGAATTCTAACGGCTTGCA 1745
| | ||||||||||||| | ||||||| ||||||||||||| |||||||| ||||||||
Sbjct 1583 CGGTCAGGAGCATTTCACACATAGAGGCGCTAGTGTGGGTGCAAATTCTAATGGCTTGCA 1642
Query 1746 AACAAAGAACACTGCCTCGGGTGATTCCATCATCACAACTCAGAAATACTTAGAAAATGG 1805
||||||||||||||||||||||||||||||||||||||| || || ||| ||||| ||||
Sbjct 1643 AACAAAGAACACTGCCTCGGGTGATTCCATCATCACAACGCATAAGTACATAGAAGATGG 1702
Query 1806 AGGAGGAGCGAGCTTTGATCATTTTGAAAGTGAGGATAGTGCTCGTAGGCTTCCAAGAAC 1865
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1703 AGGA-GA--TAGCTTTGATCATTTTGAAAGTGAGGATAGTGCTCGCAGGCTTCCAAGAAC 1759
Query 1866 GAGGGACTCGACTGAAGAATGTATGTTACTGCTTAAAAGATCAGAAATGTTAGGAGATGA 1925
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1760 GAGGGACTCGACTGAAGAATGTATGTTACTGCTTAAGAGATCAGAAATGTTAGGAGATGA 1819
Query 1926 AAGCAAAGACATGTATAATGCTACAAGGGGTGAATCGTTGGTGAAGAAGTCAGGGAGTGG 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 AAGCAAAGACATGTATAATGCTACAAGGGGTGAATCGTTGGTGAAGAAGTCAGGGAGTGG 1879
Query 1986 AGAGGATTGGTTTACTGCTTCTGGTAATCGTGCTGGGAAACCGGAAGTCAACTACGGGAG 2045
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1880 AGAGGATTGGTTTACTGCTTCGGGTAATCGTGCTGGGAAACCGGAAATCAACTACGGGAG 1939
Query 2046 AATGTCATTTGATGACAGCATTTTGACATCTCAAGGTTCTGATAAGAGCAAGAAACAAGA 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 AATGTCATTTGATGACAGCATTTTGACATCTCAAGGTTCTGATAAGAGCAAGAAACAAGA 1999
Query 2106 ATTCGTTGATGATTCTTTCATGGTCCATTCATCATCGCTTGCTGCTGATGATCTGTATGA 2165
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2000 ATTCGTTGATGATTCTTTCATGGTCCATTCATCATCGCTTGCTGCTGATGATCTTTATGA 2059
Query 2166 CTCTCGGTGGAGACCAGACATGGCTGCTGATATTGCTTTAGCCTCTGACATTGACAACGG 2225
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2060 CTCTCGGTGGAGACCAGACATGGCTGCTGATATTGTTTTAGCCTCTGACGTTGACAACGG 2119
Query 2226 TCATGCTAATGAAAAGCACGATTCATGGGAACCAAATGACCTTTGTATGATTCCTGAACG 2285
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2120 GCATGCTAATGAAAAACACGATTCATGGGAACCAAATGATCTTTGTATGATTCCTGAACG 2179
Query 2286 CAATTCAGGAGACTCTTTGGCTAATGATTATTCGATCGATTTCTCTGCTGAAGCAAATGC 2345
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2180 CAATTCAGGAGACTCTTTGGCTAATGATTATTCGATTGATTTCTCTGCTGAAGCAAATGC 2239
Query 2346 AAGGCTATCGAGTAACGGAACAACGCAGGAGAAAGAAGATAAGACCGTCTCAAGCGGTGA 2405
||||||||| |||||||||||| | ||||||||||||||||||| || ||| |
Sbjct 2240 AAGGCTATCCAGTAACGGAACAGCTCAGGAGAAAGAAGATAAGAGCG------GCG---A 2290
Query 2406 GAAGAAAAACAATGTGAAGAACCCGGAAACTCGTAAGTCTAGAACTCCAAGTAGAACCAG 2465
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2291 GAAGAAAAACAATGTGAAGAACCCGGAAACTCGTAAGTCTAAAACTCCAAGTAGAACCAG 2350
Query 2466 AGCGGAAACAATGTCCAAGACTGCAAAGAAACCAACAGTAGCTAGCAGAACAATGGCACA 2525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2351 AGCGGAAACAATGTCCAAGACTGCAAAGAAACCAACAGTAGCTAGCAGAACAATGGCACA 2410
Query 2526 GAAGAACAAGTTTGAAAAGGAAGAAGAGATGCGGAAGAGAATAGAGAATCTTGTAATGGA 2585
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2411 GAAGAACAAGTTTGAAAAGGAAGAAGAGATGCGGAAGAGAATAGAAAACCTTGTAATGGA 2470
Query 2586 AAGGCAAAGAAGAATCGCAGAGAGATCAGCCATGACTGCATCCCGAAAAGTTTCTCTCGA 2645
|||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 2471 AAGGCAAAAAAGAATCGCAGAGAGATCAGCCATGACTGCATCTCGTAAAGTTTCTCTAGA 2530
Query 2646 TAAAGGTTCGAGCAGAGCTCCTTCGGTTCGCGAAAGGGCTACATAA 2691
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2531 CAAAGGTTCGAGCAGAGCTCCTTTGGTTCGCGAAAGGGCTACATAA 2576
> AT1G61105.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr1:22513585-22514492 REVERSE LENGTH=598
Length=598
Score = 791 bits (428), Expect = 0.0
Identities = 466/485 (96%), Gaps = 0/485 (0%)
Strand=Plus/Plus
Query 1 ATGCAACGTTTGTTAGCACCTTGCTCAAAACTCGCATACACAACGAGATACATAGCAAAT 60
||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 1 ATGCAACGTTTGTTAACACCTTGCTCAAAAATCGCATACACAACAAGATACATTGCAAAT 60
Query 61 CCAACCCTACCTTACCCAAACCCATGTGATATTTTCATCAATCATCGTGGGATCGATACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAACCCTACCTTACCCAAACCCATGTGATATTTTCATCAATCATCGTGGGATCGATACC 120
Query 121 AAGAAGACTATTTCAGGCCTATTATATGATCATTTTACTAGACAACGTTTGACTGCTTTC 180
||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 121 AAGAAGACTATTTCAGGCCTACTATATGATTGTTTCACTAGACAACGTTTGACTGCTTTC 180
Query 181 TTGGATAGTAAGAGTTTAAAGCCTGGGGATAGGCTTTTCGTCGAGATCGATATGGCAATC 240
|||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct 181 TTGGATAGTAAGAGTTTAAAGCCTGGAGACAGGCTTTTTGTCGAGATCGACATGGCAATC 240
Query 241 AAAGCATGCGGGGTTGGTATTGCGGTTTTCTCTCCTCGTTACTGTGACTCTTACTTCTGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGCATGCGGGGTTGGTATTGCGGTTTTCTCTCCTCGTTACTGTGACTCTTACTTCTGT 300
Query 301 CTCCACGAACTCACATTGCTCATGGAGAACAAGAAAAGAGTCATCCCTATATTTTGCGAT 360
||||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 301 CTCCATGAACTCGCATTGCTCGTGAAGAACAAGAAAAGAGTCATCCCTATATTTTGCGAT 360
Query 361 GTCAAGCCATCGGAACTCTGCATAAAAGATGACAGGACACGTCCAGCTGCCGAGATCCGG 420
||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct 361 GTCAAGCCATCGGAACTCTGCGTAAAAGACGACAAGACACGTCCAGCTGCCGAGATCCGG 420
Query 421 AGGTTTCAATTGGCTCTCGAGGAAGCAAAATATACCGTAGGACTCACGTTTGATACATCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGTTTCAATTGGCTCTCGAGGAAGCAAAATATACCGTAGGACTCACGTTTGATACATCT 480
Query 481 AATGG 485
|||||
Sbjct 481 AATGG 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133644736152
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5